| Previous changeset 12:0a2817800fd9 (2020-03-02) Next changeset 14:d3db19200b24 (2022-09-13) |
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Commit message:
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/intarna commit 76e8f82fd859dcb91b5704df4fd5d2d154ad799e" |
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modified:
intarna.xml |
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| diff -r 0a2817800fd9 -r ddfd02440cfa intarna.xml --- a/intarna.xml Mon Mar 02 16:18:10 2020 -0500 +++ b/intarna.xml Tue Apr 12 15:47:18 2022 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="intarna" name="IntaRNA" version="3.2.0"> +<tool id="intarna" name="IntaRNA" version="3.3.1"> <description>Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites.</description> <macros> <macro name="query_macro"> @@ -64,10 +64,11 @@ <option selected="true" value="Q">in the query only</option> <option value="B">in both sequences</option> </param> + <param argument="--outPairwise" checked="false" falsevalue="" help="" label="Enables pairwise sequence processing, i.e. interactions are only computed for each corresponding query-target pair (same index) instead of all-vs-all" truevalue="--outPairwise" type="boolean" /> </macro> </macros> <requirements> - <requirement type="package" version="3.2.0">intarna</requirement> + <requirement type="package" version="3.3.1">intarna</requirement> </requirements> <version_command>IntaRNA --version</version_command> <command detect_errors="exit_code"><![CDATA[ @@ -112,6 +113,7 @@ --outOverlap $advancedOptions.output.outOverlap --outCsvCols '$advancedOptions.output.outCsvCols' --outCsvSort '$advancedOptions.output.outCsvSort' + $advancedOptions.output.outPairwise #if $advancedOptions.advancedSelector == "advanced" ## Query parameters --qIntLoopMax $advancedOptions.query.qIntLoopMax |