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Changeset 2:ddff0f6d5740 (2023-06-08)

Previous changeset 1:d3b1853c4efd (2023-01-13) Next changeset 3:f47ed6c69f5d (2024-02-01)

Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 65e4952f33eb335528e8553150e9097e5ea8f556

modified:
qiime2_core__tools__export.xml

diff -r d3b1853c4efd -r ddff0f6d5740 qiime2_core__tools__export.xml
--- a/qiime2_core__tools__export.xml Fri Jan 13 23:02:16 2023 +0000
+++ b/qiime2_core__tools__export.xml Thu Jun 08 19:53:25 2023 +0000

[

b'@@ -6,14 +6,14 @@\n -->\n \n-<tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2022.11.1+dist.h2bda5906.2" profile="22.05" license="BSD-3-Clause">\n+<tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2023.5.0+dist.h193f7cc9.2" profile="22.05" license="BSD-3-Clause">\n <description>Export data from a QIIME 2 artifact</description>\n <requirements>\n- <container type="docker">quay.io/qiime2/core:2022.11</container>\n+ <container type="docker">quay.io/qiime2/core:2023.5</container>\n </requirements>\n <command detect_errors="exit_code">q2galaxy run tools export \'$inputs\'</command>\n <configfiles>\n@@ -44,6 +44,7 @@\n <option value="FeatureData__ob__AlignedRNASequence__cb__">FeatureData[AlignedRNASequence]</option>\n <option value="FeatureData__ob__AlignedSequence__cb__">FeatureData[AlignedSequence]</option>\n <option value="FeatureData__ob__BLAST6__cb__">FeatureData[BLAST6]</option>\n+ <option value="FeatureData__ob__DecontamScore__cb__">FeatureData[DecontamScore]</option>\n <option value="FeatureData__ob__DifferentialAbundance__cb__">FeatureData[DifferentialAbundance]</option>\n <option value="FeatureData__ob__Differential__cb__">FeatureData[Differential]</option>\n <option value="FeatureData__ob__Importance__cb__">FeatureData[Importance]</option>\n@@ -61,6 +62,7 @@\n <option value="FeatureTable__ob__PresenceAbsence__cb__">FeatureTable[PresenceAbsence]</option>\n <option value="FeatureTable__ob__RelativeFrequency__cb__">FeatureTable[RelativeFrequency]</option>\n <option value="Hierarchy">Hierarchy</option>\n+ <option value="ImmutableMetadata">ImmutableMetadata</option>\n <option value="MultiplexedPairedEndBarcodeInSequence">MultiplexedPairedEndBarcodeInSequence</option>\n <option value="MultiplexedSingleEndBarcodeInSequence">MultiplexedSingleEndBarcodeInSequence</option>\n <option value="PCoAResults">PCoAResults</option>\n@@ -153,6 +155,12 @@\n <option value="BLAST6Format">BLAST6 Format</option>\n </param>\n </when>\n+ <when value="FeatureData__ob__DecontamScore__cb__">\n+ <param name="output_format" type="select" label="QIIME 2 file format to convert to:">\n+ <option value="None" selected="true">export as is (no conversion)</option>\n+ <option value="DecontamScoreFormat">Decontam Score Format</option>\n+ </param>\n+ </when>\n <when value="FeatureData__ob__DifferentialAbundance__cb__">\n <param name="output_format" type="select" label="QIIME 2 file format to convert to:">\n <option value="None" selected="true">export as is (no conversion)</option>\n@@ -262,6 +270,12 @@\n <option value="NewickFormat">Newick Format</option>\n </param>\n </when>\n+ <when value="ImmutableMetadata">\n+ <param name="output_format" type="select" label="QIIME 2 file format to convert to:">\n+ <option value="None" selected="true">export as is (no conversion)</option>\n+ <option value="ImmutableMetadataFormat">Immutable Metadata Format</option>\n+ </param>\n+ </when>\n <when value="MultiplexedPairedEndBarcodeInSequence">\n <param name="output_format" type="select" label="QIIME 2 file format to convert to:">\n <option value="None" selected="true">export as is (no conversion)</option>\n@@ -434,7 +448,7 @@\n </inputs>\n <outputs>\n <collection nam'..b'+Format for a 2+ column TSV file with an expected minimal header.\n+\n+The only header recognized by this format is:\n+\n+ Feature ID<tab>Taxon\n+\n+Optionally followed by other arbitrary columns.\n+\n+This format supports blank lines. The expected header must be the first\n+non-blank line. In addition to the header, there must be at least one line\n+of data.\n+\n+\n FastqGzFormat\n *************\n \n@@ -832,74 +862,78 @@\n \n Additional formats without documentation:\n *****************************************\n- - QIIME1DemuxDirFmt\n- - ArtificialGroupingDirectoryFormat\n- - DeblurStatsFmt\n- - DADA2StatsFormat\n- - ImportanceDirectoryFormat\n- - BIOMV210Format\n+ - FirstDifferencesFormat\n+ - DecontamScoreDirFmt\n+ - OrdinationDirectoryFormat\n+ - EMPPairedEndDirFmt\n+ - ImmutableMetadataFormat\n+ - PredictionsDirectoryFormat\n - AlphaDiversityDirectoryFormat\n+ - DataLoafPackageDirFmt\n - AlignedDNAFASTAFormat\n- - DataLoafPackageDirFmt\n- - MultiplexedSingleEndBarcodeInSequenceDirFmt\n- - QualityFilterStatsDirFmt\n+ - DADA2StatsDirFmt\n+ - TrueTargetsDirectoryFormat\n+ - UchimeStatsFmt\n - BLAST6Format\n - PairedDNASequencesDirectoryFormat\n- - EMPPairedEndDirFmt\n- - NewickDirectoryFormat\n- - PlacementsFormat\n- - FirstDifferencesDirectoryFormat\n+ - QIIME1DemuxDirFmt\n+ - QualityFilterStatsFmt\n+ - DADA2StatsFormat\n - AlignedProteinFASTAFormat\n- - BIOMV210DirFmt\n- - DistanceMatrixDirectoryFormat\n- - TSVTaxonomyDirectoryFormat\n- - FirstDifferencesFormat\n- - TrueTargetsDirectoryFormat\n- - Bowtie2IndexDirFmt\n- - ProcrustesStatisticsFmt\n+ - PlacementsFormat\n+ - NewickFormat\n+ - ProbabilitiesDirectoryFormat\n+ - ErrorCorrectionDetailsDirFmt\n - ProteinFASTAFormat\n - RNAFASTAFormat\n- - ProbabilitiesDirectoryFormat\n- - SingleLanePerSampleSingleEndFastqDirFmt\n- - OrdinationFormat\n+ - MultiplexedSingleEndBarcodeInSequenceDirFmt\n+ - BooleanSeriesFormat\n+ - LSMatFormat\n+ - ImportanceDirectoryFormat\n+ - DeblurStatsFmt\n - AlignedRNASequencesDirectoryFormat\n- - PlacementsDirFmt\n+ - QualityFilterStatsDirFmt\n - TaxonomicClassiferTemporaryPickleDirFmt\n- - ArtificialGroupingFormat\n- - CasavaOneEightSingleLanePerSampleDirFmt\n- - ImportanceFormat\n+ - BooleanSeriesDirectoryFormat\n - DifferentialDirectoryFormat\n - DNAFASTAFormat\n- - DADA2StatsDirFmt\n- - BooleanSeriesDirectoryFormat\n- - AlignedDNASequencesDirectoryFormat\n- - PredictionsFormat\n- - MultiplexedPairedEndBarcodeInSequenceDirFmt\n- - AlphaDiversityFormat\n- - ProbabilitiesFormat\n+ - ProcrustesStatisticsFmt\n+ - PlacementsDirFmt\n - EMPSingleEndDirFmt\n- - BLAST6DirectoryFormat\n+ - DecontamScoreFormat\n+ - BIOMV210DirFmt\n+ - ImmutableMetadataDirectoryFormat\n+ - AlignedDNASequencesDirectoryFormat\n+ - TSVTaxonomyDirectoryFormat\n+ - OrdinationFormat\n+ - FirstDifferencesDirectoryFormat\n+ - Bowtie2IndexDirFmt\n+ - BIOMV210Format\n+ - SingleLanePerSampleSingleEndFastqDirFmt\n+ - SampleEstimatorDirFmt\n - PairedRNASequencesDirectoryFormat\n- - PredictionsDirectoryFormat\n- - UchimeStatsFmt\n+ - CasavaOneEightSingleLanePerSampleDirFmt\n - AlignedProteinSequencesDirectoryFormat\n- - NewickFormat\n - UchimeStatsDirFmt\n- - SampleEstimatorDirFmt\n- - ProcrustesStatisticsDirFmt\n+ - NewickDirectoryFormat\n+ - SingleLanePerSamplePairedEndFastqDirFmt\n - DifferentialFormat\n - ProteinSequencesDirectoryFormat\n - RNASequencesDirectoryFormat\n- - LSMatFormat\n- - SingleLanePerSamplePairedEndFastqDirFmt\n- - QualityFilterStatsFmt\n- - OrdinationDirectoryFormat\n- - ErrorCorrectionDetailsDirFmt\n+ - MultiplexedPairedEndBarcodeInSequenceDirFmt\n+ - AlphaDiversityFormat\n+ - DistanceMatrixDirectoryFormat\n+ - ArtificialGroupingFormat\n+ - ArtificialGroupingDirectoryFormat\n+ - ProbabilitiesFormat\n+ - DeblurStatsDirFmt\n+ - SeppReferenceDirFmt\n+ - ImportanceFormat\n+ - BLAST6DirectoryFormat\n - AlignedRNAFASTAFormat\n - DNASequencesDirectoryFormat\n- - BooleanSeriesFormat\n- - SeppReferenceDirFmt\n- - DeblurStatsDirFmt\n+ - ProcrustesStatisticsDirFmt\n+ - PredictionsFormat\n </help>\n <citations>\n <citation type="doi">10.1038/s41587-019-0209-9</citation>\n'