| Next changeset 1:3645d1bcc7bb (2014-10-18) |
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Commit message:
Uploaded |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r de145ceb3ac0 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sat Oct 18 03:46:53 2014 -0400 |
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| @@ -0,0 +1,31 @@ +<?xml version='1.0' encoding='utf-8'?> +<tool_dependency> + <package name="pyvcf" version="0.6.7"> + <readme> + This Galaxy Tool shed package installs pyvcf(https://pypi.python.org/pypi/PyVCF) + package. + + The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF + + Developmental version is hosted on Github: https://github.com/saketkc/galaxy_tools/packages/package_pyvcf_0_6_7/ + </readme> + <install version="1.0"> + <actions> + <action type="download_by_url">https://pypi.python.org/packages/source/P/PyVCF/PyVCF-0.6.7.tar.gz</action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="shell_command"> + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && + python setup.py install --install-lib $INSTALL_DIR/lib/python + </action> + <action type="set_environment"> + <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable> + </action> + </actions> + </install> + </package> +</tool_dependency> + + + + |