| Previous changeset 4:71f57a90f530 (2017-12-12) |
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Commit message:
Uploaded |
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added:
README_dos2unix |
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| diff -r 71f57a90f530 -r de565501c7d3 README_dos2unix --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README_dos2unix Tue Dec 12 09:40:48 2017 -0500 |
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| @@ -0,0 +1,31 @@ +************************************************************************************ +****** Add perl and xml wrapper files in tools/ d ****** +************************************************************************************ + + +Download files with hg clone in tools/ directory, then you have these files availables (wrappers and scripts): +sm_dos2unix.pl sm_dos2unix.xml +and GalaxyPath.pm + +Add GalaxyPath.pm file in /path/to/galaxy_sources/ directory + +************************************************************************************ +****** tool_conf.xml file to update ****** +************************************************************************************ + +Add a tag <tool> in your section "convert formats" (for instance) in your config/tool_conf.xml file: + <tool file="my_tools/sm_dos2unix/sm_dos2unix.xml" /> + +************************************************************************************ +****** Add paths in galaxy.ini configuation file ****** +************************************************************************************ + +Add a my_bin/ directory in galaxy repository with symbolic links to binaries: +[galaxy-preprod@vm-galaxy-preprod my_bin]$ pwd +/galaxydata/galaxy-preprod/my_bin +lrwxrwxrwx 1 galaxy-prod wbioinfo 11 3 juin 2016 dos2unix -> dos2unix3.1 + + +Add paths to binaries and a section [workPath], at the end of galaxy.ini file: +Dans geany ../../config/galaxy.ini & +DOS=/galaxydata/galaxy-prod/my_bin/dos2unix |