| Previous changeset 1:6ff67d2860e1 (2024-05-24) Next changeset 3:f3233d395549 (2024-09-30) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tooldistillator commit d7cada7ddf775e946e218fdc839e6e4c8aac6d80 |
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modified:
macro.xml |
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added:
test-data/bwa/aligned_R1.bam test-data/bwa/aligned_R2.bam test-data/fastqc/fastqc_report.html test-data/fastqc/fastqc_report.txt test-data/filtlong/filtered_sample.fastq.gz test-data/flye/assembly.fasta test-data/flye/assembly.gfa test-data/flye/assembly_infos.tsv test-data/polypolish/polished_assembly.fasta test-data/summarize/bwa_output.json test-data/summarize/fastqc_output.json test-data/summarize/filtlong_output.json test-data/summarize/flye_output.json test-data/summarize/polypolish_output.json |
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| diff -r 6ff67d2860e1 -r def7a82d23e1 macro.xml --- a/macro.xml Fri May 24 10:47:00 2024 +0000 +++ b/macro.xml Wed Jul 03 12:07:36 2024 +0000 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">0.8.5.0</token> + <token name="@TOOL_VERSION@">0.9</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">21.05</token> <xml name="version_command"> |
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| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/bwa/aligned_R1.bam |
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| Binary file test-data/bwa/aligned_R1.bam has changed |
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| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/bwa/aligned_R2.bam |
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| Binary file test-data/bwa/aligned_R2.bam has changed |
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| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/fastqc/fastqc_report.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fastqc/fastqc_report.html Wed Jul 03 12:07:36 2024 +0000 |
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| b'@@ -0,0 +1,187 @@\n+<!DOCTYPE html><html><head><title>SRR8335315_150M_fastq FastQC Report</title><style type="text/css">\n+ @media screen {\n+ div.summary {\n+ width: 18em;\n+ position:fixed;\n+ top: 3em;\n+ margin:1em 0 0 1em;\n+ }\n+ \n+ div.main {\n+ display:block;\n+ position:absolute;\n+ overflow:auto;\n+ height:auto;\n+ width:auto;\n+ top:4.5em;\n+ bottom:2.3em;\n+ left:18em;\n+ right:0;\n+ border-left: 1px solid #CCC;\n+ padding:0 0 0 1em;\n+ background-color: white;\n+ z-index:1;\n+ }\n+ \n+ div.header {\n+ background-color: #EEE;\n+ border:0;\n+ margin:0;\n+ padding: 0.5em;\n+ font-size: 200%;\n+ font-weight: bold;\n+ position:fixed;\n+ width:100%;\n+ top:0;\n+ left:0;\n+ z-index:2;\n+ }\n+\n+ div.footer {\n+ background-color: #EEE;\n+ border:0;\n+ margin:0;\n+\tpadding:0.5em;\n+ height: 1.3em;\n+\toverflow:hidden;\n+ font-size: 100%;\n+ font-weight: bold;\n+ position:fixed;\n+ bottom:0;\n+ width:100%;\n+ z-index:2;\n+ }\n+ \n+ img.indented {\n+ margin-left: 3em;\n+ }\n+ 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alt="Adapter graph"/></p></div></div><div class="footer">Produced by <a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/">FastQC</a> (version 0.12.1)</div></body></html>\n\\ No newline at end of file\n' |
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| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/fastqc/fastqc_report.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fastqc/fastqc_report.txt Wed Jul 03 12:07:36 2024 +0000 |
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| b'@@ -0,0 +1,417 @@\n+##FastQC\t0.12.1\n+>>Basic Statistics\tpass\n+#Measure\tValue\n+Filename\tSRR8335315_150M_fastq\n+File type\tConventional base calls\n+Encoding\tSanger / Illumina 1.9\n+Total Sequences\t150000\n+Total Bases\t1 Gbp\n+Sequences flagged as poor quality\t0\n+Sequence length\t5000-208721\n+%GC\t49\n+>>END_MODULE\n+>>Per base sequence quality\tfail\n+#Base\tMean\tMedian\tLower Quartile\tUpper Quartile\t10th Percentile\t90th Percentile\n+1\t2.8365066666666667\t2.0\t1.0\t4.0\t1.0\t6.0\n+2\t5.008253333333333\t3.0\t2.0\t7.0\t1.0\t12.0\n+3\t4.9963733333333336\t4.0\t2.0\t7.0\t1.0\t10.0\n+4\t5.492173333333334\t4.0\t2.0\t7.0\t1.0\t12.0\n+5\t5.953973333333333\t5.0\t3.0\t8.0\t1.0\t11.0\n+6\t5.105973333333333\t4.0\t2.0\t7.0\t1.0\t10.0\n+7\t6.98078\t6.0\t4.0\t9.0\t2.0\t13.0\n+8\t7.78512\t6.0\t4.0\t11.0\t2.0\t15.0\n+9\t9.664386666666667\t8.0\t5.0\t13.0\t3.0\t18.0\n+10-4999\t12.829364350033384\t11.984569138276553\t6.997795591182364\t17.925851703406813\t3.997995991983968\t22.989779559118237\n+5000-9999\t12.78321836605465\t11.9984\t7.0\t17.8802\t4.0\t23.0\n+10000-14999\t12.457365374925567\t11.4172\t6.94\t17.1414\t3.9632\t22.7734\n+15000-19999\t12.328473958980618\t11.2712\t6.755\t17.0012\t3.809\t22.425\n+20000-24999\t11.82052704708205\t10.740273037542662\t6.310921501706485\t16.367576791808872\t3.4976109215017064\t21.71706484641638\n+25000-29999\t10.868158810996196\tNaN\tNaN\tNaN\tNaN\tNaN\n+30000-34999\t8.860082551892548\tNaN\tNaN\tNaN\tNaN\tNaN\n+35000-39999\t8.747852380952377\tNaN\tNaN\tNaN\tNaN\tNaN\n+40000-44999\t9.24235\tNaN\tNaN\tNaN\tNaN\tNaN\n+45000-49999\t9.2681\tNaN\tNaN\tNaN\tNaN\tNaN\n+50000-54999\t9.858916666666671\tNaN\tNaN\tNaN\tNaN\tNaN\n+55000-59999\t8.900866666666667\tNaN\tNaN\tNaN\tNaN\tNaN\n+60000-64999\t8.3888\tNaN\tNaN\tNaN\tNaN\tNaN\n+65000-69999\t8.4588\tNaN\tNaN\tNaN\tNaN\tNaN\n+70000-74999\t8.2615\tNaN\tNaN\tNaN\tNaN\tNaN\n+75000-79999\t8.1645\tNaN\tNaN\tNaN\tNaN\tNaN\n+80000-84999\t8.4919\tNaN\tNaN\tNaN\tNaN\tNaN\n+85000-89999\t8.2781\tNaN\tNaN\tNaN\tNaN\tNaN\n+90000-94999\t8.7185\tNaN\tNaN\tNaN\tNaN\tNaN\n+95000-99999\t8.6579\tNaN\tNaN\tNaN\tNaN\tNaN\n+100000-104999\t8.2408\tNaN\tNaN\tNaN\tNaN\tNaN\n+105000-109999\t8.4248\tNaN\tNaN\tNaN\tNaN\tNaN\n+110000-114999\t8.695\tNaN\tNaN\tNaN\tNaN\tNaN\n+115000-119999\t9.1269\tNaN\tNaN\tNaN\tNaN\tNaN\n+120000-124999\t9.1556\tNaN\tNaN\tNaN\tNaN\tNaN\n+125000-129999\t8.9884\tNaN\tNaN\tNaN\tNaN\tNaN\n+130000-134999\t9.1352\tNaN\tNaN\tNaN\tNaN\tNaN\n+135000-139999\t8.5902\tNaN\tNaN\tNaN\tNaN\tNaN\n+140000-144999\t8.9054\tNaN\tNaN\tNaN\tNaN\tNaN\n+145000-149999\t9.1072\tNaN\tNaN\tNaN\tNaN\tNaN\n+150000-154999\t8.9374\tNaN\tNaN\tNaN\tNaN\tNaN\n+155000-159999\t8.9778\tNaN\tNaN\tNaN\tNaN\tNaN\n+160000-164999\t9.1418\tNaN\tNaN\tNaN\tNaN\tNaN\n+165000-169999\t9.1\tNaN\tNaN\tNaN\tNaN\tNaN\n+170000-174999\t8.825\tNaN\tNaN\tNaN\tNaN\tNaN\n+175000-179999\t9.0798\tNaN\tNaN\tNaN\tNaN\tNaN\n+180000-184999\t9.086\tNaN\tNaN\tNaN\tNaN\tNaN\n+185000-189999\t9.243\tNaN\tNaN\tNaN\tNaN\tNaN\n+190000-194999\t9.3418\tNaN\tNaN\tNaN\tNaN\tNaN\n+195000-199999\t8.6886\tNaN\tNaN\tNaN\tNaN\tNaN\n+200000-204999\t8.9724\tNaN\tNaN\tNaN\tNaN\tNaN\n+205000-208721\t8.934443847393874\tNaN\tNaN\tNaN\tNaN\tNaN\n+>>END_MODULE\n+>>Per sequence quality scores\tfail\n+#Quality\tCount\n+6\t137.0\n+7\t83.0\n+8\t315.0\n+9\t713.0\n+10\t17339.0\n+11\t35124.0\n+12\t52936.0\n+13\t22175.0\n+14\t2989.0\n+15\t2807.0\n+16\t3385.0\n+17\t4515.0\n+18\t5029.0\n+19\t2257.0\n+20\t188.0\n+21\t8.0\n+>>END_MODULE\n+>>Per base sequence content\tfail\n+#Base\tG\tA\tT\tC\n+1\t4.296666666666667\t33.91133333333333\t14.367333333333331\t47.42466666666667\n+2\t14.108666666666666\t8.154\t37.97533333333333\t39.762\n+3\t66.384\t18.305333333333333\t9.292\t6.018666666666666\n+4\t26.55666666666667\t14.106\t55.059333333333335\t4.278\n+5\t12.635333333333335\t13.586666666666666\t66.95466666666667\t6.823333333333332\n+6\t39.425333333333334\t28.451999999999998\t17.297333333333334\t14.825333333333331\n+7\t17.63533333333333\t7.803333333333333\t43.79866666666667\t30.762666666666664\n+8\t22.85\t17.016666666666666\t37.35666666666667\t22.776666666666667\n+9\t15.648000000000001\t5.405333333333333\t35.742000000000004\t43.20466666666667\n+10-4999\t25.032629926519707\t25.026529058116232\t25.05940788243153\t24.881433132932532\n+5000-9999\t25.026564605357425\t25.117699789958074\t24.96846532067271\t24.88727028401179\n+10000-14999\t24.998636583465146\t25.082778861044673\t25.067274867305482\t24.851309688184692\n+15000-19999\t24.957521341264087'..b'9133333333333983\t1.8259999999999277\t0.12866666666666093\n+65000-69999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+70000-74999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+75000-79999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+80000-84999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+85000-89999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+90000-94999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+95000-99999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+100000-104999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+105000-109999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+110000-114999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+115000-119999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+120000-124999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+125000-129999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+130000-134999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+135000-139999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+140000-144999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+145000-149999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+150000-154999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+155000-159999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+160000-164999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+165000-169999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+170000-174999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+175000-179999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+180000-184999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+185000-189999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+190000-194999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+195000-199999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+200000-204999\t0.02599999999999909\t0.030666666666663924\t0.015333333333331962\t0.09133333333333983\t1.8259999999999277\t0.12866666666666093\n+205000-208710\t0.025999999999999787\t0.030666666666664757\t0.015333333333332378\t0.0913333333333354\t1.8260000000000205\t0.1286666666666718\n+>>END_MODULE\n' |
| b |
| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/filtlong/filtered_sample.fastq.gz |
| b |
| Binary file test-data/filtlong/filtered_sample.fastq.gz has changed |
| b |
| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/flye/assembly.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/flye/assembly.fasta Wed Jul 03 12:07:36 2024 +0000 |
| b |
| @@ -0,0 +1,127 @@ +>contig_1 +AGTTTTTTGTGTGTTGTTTTATTGTTTTGCGTGGTTTGTTTTTATTGTTATTTCATTAAG +GAAGGTAAATTCAGGATGGCAGTCTGTAGATAATCGGAGGTCACTTATGCTACATGATCA +CGTGGCAGAATGTCTGGAGAAAAAGGACTGTACCGGAGAGCAGCTGAACGATGGGCAAAA +GTGATGGTACAGCTAAGTGATGACCAGAAAGAAAAGTGGCGGCACAGAAACGAGCAGAGT +GTTTGCGTAAGGCGCGCGGACTCCGGTTTCACCGGTGAACCTGACCGAAATAAAACAAGC +GGTCAACAGACTACATTCTGAGTTGGGAATGGATTTGAAGAGCGGCGGGTATTCCGACGA +TATAAAGGGACAGGAGAACAGAATACGTCCGGAAACGCGCGGTCAAAAAATGCTAAAAAT +ATCTGAGAGAGTTATTGCCTGTTACCATAAGAAAAAGCGACTTTAGTGGTCGCTTTTGTG +TCATATATAAGTCGTTTAAGTAAACCTGTCTGAACAGGTGCTCTGGTCGTGTTTGTCTTT +GTTGGGTACAAATTGAGAATATTTTCATTAATTAATCTTCTTCTGCAGGCTTCAATAACC +CACGCTGAAAAATTACCTGAACCTTTCAGGTCAAGAGCGATGTTAATTTGTTCAATTATC +TGGTTTGGAAATCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTTGATGACATA +ATGTTGCCCCGTATTCAGTGTTGCTGATTTGTATTATCTGAAGTTGCTTTTACGCTAATT +TGATGCAGATCAATTAATACGATACCTGCGTAATAATTGATTATTTCTCGTGGTTTGATG +GCGTACACATGTCGTGATAAACCTCATGTAGATGATAATTATTATCATTTTCGTGGGTCC +TTTCCGGCGATCCGACAGGTTACGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAA +TTTTCCGGTTTAAGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTTTTATTTAAAATA +CCCCTGAAAGAAAGGAAACGACAGGTGCTGAAAACGGGCTTTTGGCCTCTGTCGTTTCCT +TTCTCTGTTTTGTCCGTGGAATGAACAATGGAAGTCAACAAAAGCAGCTGGCTGACATTT +TCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGAATGCCCGTTCTGCGAGG +CGGTGGCAAGGGTAATGAGGTGCTTTATGATTCTGCCGCCGTCATAAAATGGTATGCCGA +AAGGGATGCTGAAATTGAGAACGAAAGCTGCGCCGGGAAGTTGAAGAACTGCGGCAGGCC +AGCGAGACAGATCTCCAGCCGGGGACTATTGAGTACGAACGCCATCGACTTACGCGTGCG +CAGGCCGACGCACAGGAGCTGAAAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCAT +TCTGTACTTTCGTGCTGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCC +CCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACG +GGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCT +GAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTC +GCTCACTGTTCAGGCCGGAGCCACAGACCGCCGTTGAATGGGCGGATGCCAGTTACTATC +TCCCGAAAGAATCCGCATACCGTGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCA +TCATGAATGCGATGGGCAGCGACTACATCCGCGAGGTGAATGTGGTGAAGTCTGCCCGTG +TTGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTTCATAGAGCATAAGCAGCGCA +ACACACTTATCTGGTTGCCGACGGATGGTGATGCCGAGAACTTTATGAAAACCCACGTTG +AGCCGACCATCCGCGATATTCCGTCGCTGCTGGCGCTGGCTCCGTGGTATGGCAAAAGCA +CCGGGATAACACGCTCACTATGAAGCGTTTTTCCAATGGTCGTGGCTTCTGGTGCCCGGG +CGGTAAAGCGGCAAAAACTACCGTGAAAAGTCGGTGGATGTGGCGGGTTATGATGAACTT +GCTGCCTTTGATGAGGATATTGAACAGGAAGGCTCTCCGACGTTCTCGGGCGATAAGCGT +ATTGAAGGCTCGGTCTGGCCAAAGTCCATCCGTGGCTCCACGCCCAAAGTGAGAGCACCT +GCCAGATTGAGCGTGCAGCCAGTGAATCCCGCATTTTATGCGTTTTCATGTTGCCTGCCC +GCACTGCGGGAGGAGCAGTATCTTAAATTTGGCGACAAAGAGACGCCGTTTGGCCTCAAA +TGGACGCCGGATGACCCTCCAGCGTGTTTTATCTCTGCGAGCATAATGCCTGCGTCATCC +GCCAGCAGGAGCTGGACTTTACTGATGCCCGTTATATCTGCGAAAAGACCGGGATCTGGA +CCCGTGATGGCATTCTCTGGTTTCGTCATCCGGTGAAGAGATTGAACCGCCTGACAGTGT +GACCTTTCACATCTGGACGGCGTACAGCCCGTTCACCACGGGTGCAGATTGTCAAAGACT +GGATGAAGACGAAAGGGATACGGGAAAACGTAAAACCTTCGTGAACACCACGCTCGGTGA +GACGTGGGAAGCGAAAATCGGCGAACGTCCGGATGCTGAGGTGATGGCGGAGCGGAAGAG +TATTATTCAGCGCCCGTTCCTGATCGTGTGGCTTACCTGACCGCCGGTATCGACTCCCAG +CTGGACCGCTACGAAATGCGCGTATGGGGATGGGGGCCGGGTGAGAAAGCTGGCTGATTG +ACCGGCAGATTATTATGGGCCGCCACGACGATGAACAGACGCTGCTGCGTGGATGAGGCC +ATCAATAAAACCTATACCCGCCGGAATGGTGCAGAAATGTCGGTATCCCGTATCTGCTGG +GATACTGGCGGGATTGACCCGACCATTGTGTATGAACGCTCGAAAAACATGGGCTGTTCC +GGGTGATCCCATTAAAGGGCATCCGTCTACGGAAAGCCGGTGGCCAGCATGCCACGTAAG +CGAAACAAAACGGGTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTA +TAACCGCTTCACACTGACGCCGGAAGGGATGAACCGCTTCCGGTGCCGTTCACTTCCGAA +TAACCCGGATATTTTGATCTTACCGAAGCGCAGCAACTGACTGCTGAAGAGCAGGTCGAA +AAATGGGTGGATGGCAGGAAAAAATACTGTGGGACAGCAAAAGCGACGCAATGAGGCGCT +CGACTGCTTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCGCTGGCAGCTGGAT +CTCAGTGCACTGCTGGCGAGCCTGCAGGAAGAGGATGGTGCAGCAACCAACAAGAAAACA +CTGGCAGAATACGCCCGTGCCTTATCCGGAGAGGATGAATGACGCGACAGGAAGAACTTG +CCGCTGCCCGTGCGGCACTGCATGACCTGATGACAGGAAAACGGGTGGCAACGGTACAGA +AAGACGGACGGCGAGTGGGTTTACGACCACTTCCGTGTCTGACCTGAAAAATACATTGCT +GAGCTGGAAGTGCAGACCGGCATGACACAGCGACGCAGGGGACCAGCAGGATTTTATGTA +TGAAAATGTCCACCATTCCCACCCTTCTGGGGCCGGACGGCATGACATCGCTGCGTGAAT +ATGCCGGTTATCACGGCGGTGGCAGCGGATTTGGTGGGCAGTTGCGGGCGTGGAACCCAC +CGGGTGAAAGTGTGGATGCAGCCCTGCTGCCCAACTTTACCCGTGGCAATGCCCGCGCAG +ACGATCTGGTACGCAATAACGGCTATGCCGCCAACGCCATCCAGTTGCATCAGGATCATA +TCGTCGGGTCTTTTTCCGGCTCAGTCATCGCCCAAGCTGGCGCTATCTGGGCATCGGGGA +GGAAGAAGCCCGTGCCTTTTCCCGCGAGGTTGAAGCGGCATGGAAAGAGTTTGCCGAAGA +TGACTGTTGCTGCATTGACGTTGAGCGAAACGCACGTTTACCATGATGATTCGGGAAGGT +GTGGCCATGCACGCCTTTAACGGTGAACTGTTCGTTCAGGCCACGGGATACCCGTCCTCG +CGACTGTTCCGGACACAGTTCCGGATGGTCAGCCCAAGCGCATCAGCAACCCGAACAATA +CCGGCGACAGCCGGAACTGCCGTGCCGGTGTGCAGATTAATGACAGCGGTGCGGCGCTGG +GATATTACGTCAGCGAGGACGGGTATCCGGCTGGATGCCGCAGAAATGGACATGGATACC +CGCGAGTTACCCGGCGGTCGTGCTTCGTTCATTCACGTCTTTGAACCCGTGGAGGACGGG +CAGACCCGCGGTGCAAATGTGTTTTACAGCGTGATGGAGCAGATGAAGATGCTCGACACG +CTGCAGAACACGCAGCTGCAGAACGCCATTGTGAAGGCGATGTATGCCGCCACCATTGAG +AGTGAGCTGGATACGCAGTCAGCGATGGATTTTATTCTGGGCGCGAACAGTCAGGAGCAG +CGGAAAGGCTGACCGGCTGGATTGGTGAAATTGCCGCGTATTACGCCGCAGCACCGGTCC +GTCTGGGAGGCGCAAAGTGCCGCACCTGATGCCGGGGACTCACTGAACCTGCAGACGGCT +CAGGACACGGATAACGGCTACTCCGTGTTTGAGCAGTCACTGCTGCGGTATATCGCTGCC +GGGCTGGGTGTCTCGTATGAGCAGCTTTCCGGAATTACGCCCAGATGAGCTACTCCACGG +CACGGGCCAGTGCGAACGAGTCGTGGGCGTACTTTATGGGGCGGCGAAAATTCGTCGCAT +CCCGTCAGGCGAGCCAGATGTTTCTGTGCTGGCTGGAAGAGGCCATCGTTCGCCGCGTGG +TGACGTTACCTTCAAAAGCGCGCTTCAGCTTTCAGGAAGCCCGCAGTGCTCGGGGAACTG +CGACTGGATAAGCTCGGTCGTATGGCCATCGATGGTCTGAAGAAGTTCAGGAAGCGGTGA +TGCTGATAGAAGCCGGACTGAGCACCTACGAGAAAGTGCGCGAAACGCGGTGACGACTAT +CAGGAAATTTTGCCCAGCAGGTCCGTGAAACGATGGAGCGCCGCGCAGCTGGTCTTAAAC +CGCCCGCACGGGCGGCTGCGGCATTGAATCCGGGCTGCGACAATCAACAGAGGAGGAGAA +GAGTGACAGCAGAGCTGCGTAATCTCCCGCATATTGCCAGCATGGCTTTTAATGAGCCGC +TGATGCTTGAACCCGCCTATGCGCGGGTTTTCTTTGTGCGCTTGCAGGCCAGCTTGGGAT +CAGCCGCCTGACGGATGCAGTATCCGGCGACAGCCTGACTGCCGGAGAGGCACCCGCGGC +GCTGGCGTTATCCGGTGATGATGACGGACCACGACAGGCCCGGAGTTATCAGGTCATGAA +CGGCATCGCCGTGCTGCCGGTGTCCGGTACGCTGGTCAGCCGGACGCGGGCGCTGCAGCC +GTATTCGGGAATGACCGGTTACAACGGCATTATCGCCCGTCTGCAACAGGCTGCCAGCGA +TCCGATGGTGGACGGCATTCTGCTCGATATGGACACACCGGGCGGGATGGTGGCGGGAGC +ATTTGACTGTGCTGACATCATCGCCCGTGTGCGAGACATCAAACCGGTATGGGCGCTGGC +CAACGACATGAACTGCAGTGCAGGTCAGCTGCTTGCCAGCGCCGCCTCCCGGCGTCTGGT +CACGCAGACCGCCCGGACAGGCTCCATCGGCGTCATGATGGCTCACAGTAATTACGGTGC +TGCCTCGGAGAAACAGGGCGTGAAATCACGCTGATTTACAGCGGCAGCCATAAGGTGGAT +GGCAACCCTACAGCCATCTACCGGGTGATGTCCGGAAACACTGCAGTCCCGGATGGATGC +AACCCGCCGGATGTTTGCGCAGAAGGTGTCGGCATATACCGGCCTGTCCGTGCAGGCTGT +GCTGGATACCGAGGCTGCAGTGTACAGCGGTCAGGAGGCCATTGATGCCGGACTGGCTGA +TGAACTTGTCAACAGCACCGATGCGATCACCGTTATGCGTGATGCACTGGATGCACGTAA +ATCCGTCTCTCAGGAGGGCGAATGACCAAAGAGACTCAATCAACAACTGTTTCAGCCACT +GCTTCGCAGGCTGACGTTACTGGCGTGGTGCCAGCGACGGAGGGCGAAAACGCCAGCGCG +GCGCAGCCGGACGTGAACGCGCAGATCACCGCTGCGGTTGCGGCAGAAAACAGCCGCATT +ATGGGGATCCTCAACTGTGAGGAGGCTCACGGACGCGAAGAACAGGCCCGCGTGCTGGCA +GAAACCCCGGTATGACCGTGGAAACGGCCCGCCGCATTCTGGCCGCAGCACCACAGAGTG +CACAGGCGCGCAGTGATACTGCGCTGGATCGTCTGATGCAGGGGCACCGGCACCGCTGGC +TGCAGGTAACCGGCATCTGATGCCGTTAACGATTTGCTGAACACACCAGTGTAAGGGATG +TTTATGACGAGCAAAGAAACCTTTACCCATTACCAGCCGCTGGGCAACAGTGACCCGGCT +CATACCGCAACCGCGCCCGGCGGATTGAGTGCGAAAGCGTCTGCAATGACCCCGCTGATG +CTGGACACCGCCACCCGTAAGCTGGTTGCGTGGGATGGCACCACCGACGG +>contig_2 +CCATGGTGTAATCACCAATATTTTTCATTTTATCAACGGGTTTAGTTGATTAGTTGTAGT +ACCTGTACCGCTCAGATAAGTAGCTGTCCAGTTAGTCATTCTTGTTAGGTTAAATCCTAT +CAGTTTTAAGATTGCTGATTGAGGATCTTGAGTATTAGATGCCCGTATTCACTGGCTGAG +GTGGCTGTTCCCAGTGCAGGTGTATATGGTGAGTTTTGCAACTGTGCACGGTAAGCTCCT +TTTACTTCCTTCAGAATTCAGTATCCCTGCTTCGCCCTGCGATGAAACTCCACTCACAGT +GGGGCACGGTCGGCCAGTTCTGCCAGTCGCTGGTTGGCAGTGGCAAAGGTCTGGTACCGA +GCCCCGAGGCAACCCAGCCGTAGGTGGTCAGGTAGGATTTCAGCTGCTCCTGCGCTCAGT +TTCTGCGTTATCTGTTGGCAACGCCTTCTGCACCGTTTCTTCATACCTGTTGGCAGCCTT +CTGAATACGGCTTTCAATATCCGGCAGGTTGCCGTTACCCGTGTCGCGTCGGGTCCGGTA +CGCTGACACAAATTCCTGTGCTGCGCTGTCCGGTCACGGAGCATGGTATCCATGGCGGAG +CGTTGTGCCGTCAGGACACCCTGATACTCCGTTTCAATGAAGGGATTGAAAAAATAGTCC +AGTGCGGACTGGTTGTTGCTGCCATTCCTTTCACGGTGAGACTCACACTCCCGCAGGTGG |
| b |
| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/flye/assembly.gfa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/flye/assembly.gfa Wed Jul 03 12:07:36 2024 +0000 |
| b |
| b'@@ -0,0 +1,23 @@\n+H\tVN:Z:1.0\n+S\tedge_1\tACCCCTGAAAGAAAGGAAACGACAGGTGCTGAAAACGGGCTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTGTCCGTGGAATGAACAATGGAAGTCAACAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGATTCTGCCGCCGTCATAAAATGGTATGCCGAAAGGGATGCTGAAATTGAGAACGAAAGCTGCGCCGGGAAGTTGAAGAACTGCGGCAGGCCAGCGAGACAGATCTCCAGCCGGGGACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGACGCACAGGAGCTGAAAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACTTTCGTGCTGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACTGTTCAGGCCGGAGCCACAGACCGCCGTTGAATGGGCGGATGCCAGTTACTATCTCCCGAAAGAATCCGCATACCGTGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGCGAGGTGAATGTGGTGAAGTCTGCCCGTGTTGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTTCATAGAGCATAAGCAGCGCAACACACTTATCTGGTTGCCGACGGATGGTGATGCCGAGAACTTTATGAAAACCCACGTTGAGCCGACCATCCGCGATATTCCGTCGCTGCTGGCGCTGGCTCCGTGGTATGGCAAAAGCACCGGGATAACACGCTCACTATGAAGCGTTTTTCCAATGGTCGTGGCTTCTGGTGCCCGGGCGGTAAAGCGGCAAAAACTACCGTGAAAAGTCGGTGGATGTGGCGGGTTATGATGAACTTGCTGCCTTTGATGAGGATATTGAACAGGAAGGCTCTCCGACGTTCTCGGGCGATAAGCGTATTGAAGGCTCGGTCTGGCCAAAGTCCATCCGTGGCTCCACGCCCAAAGTGAGAGCACCTGCCAGATTGAGCGTGCAGCCAGTGAATCCCGCATTTTATGCGTTTTCATGTTGCCTGCCCGCACTGCGGGAGGAGCAGTATCTTAAATTTGGCGACAAAGAGACGCCGTTTGGCCTCAAATGGACGCCGGATGACCCTCCAGCGTGTTTTATCTCTGCGAGCATAA\tdp:i:11\n+S\tedge_2\tGCGGCCAGAGTTGATCCGGGCCGGGGAAGATAACTGCACTCAGCATCCACGGGTGATCACACACCCGTCCACTGACCTTCGAACAGCGTAAAATCAGAAACATACACCGGCATTGAAGGATGCAGAAAAGAGATCGTGCATCGAACGCCGGGCAATTTCTTCAAACGCTGCCTGTACTTGCGCCTTCGGGGAGGTCTGGAAACCTGCTATCTCTTCAGTCATGAATCGCCTCCCGTGGGATGGCTTCCACGCCAGATTCACGCAGCGCAGCCAGAACCTGCTCAAGCGCAGGTTCAATCATTGCTTCAACCGTCGGCGTTAAGCCGATGTGTGGCTCCAGCGATTCCGGATCACGCCGACCGGGTCAGCTTTTCGGAAACTCACCGGTGAAGCGCAGGGCCGACAATACGTCGGCCGTGCCAAGCTGATGCGGAGAGATTTTGTTGGTAAACAACGCCGGAACTTCTTCATCCCGCAGGATCATCATCGTTCCCGGCGTGTTCTTTTCGACACAATGGCATCCGCAATAATCAGATGATCGCGATTTGCCATGTCGCCAAGCAGCTCCATTCCCGCCGTGCCGCCATCGAGGATCTCAACATAATCCGGCAGAATGTATCGTTGCTCTAACGCTTCGACAATCCGCACACCGATGGCTTCATCGGTCAGCAAAATATTGCCGACCCCTAAGACTAAAATACGCATTACAGAACCTTCACTGAAACCACTTCGTTGCCGTCGGCATCCACTACGTGTACCGCACAGGCCATGCACGGGTCGAAGGAGTGAATGGTACGCACCACTTCCAGCGGTTTATTCGGATCAGCAACCGGTGTACCCACCAGCGACTGCTCGTAGGGACCGACGTCATCATTGAAGTTACGCGGACCAGAGTTCGAGTTGATGGAACAACTGCCCGTAGTTGCTGATGATACCGTCTTTAATCACCATCCAGTGAGAGACATACCGCGCGGCGCTTCGAGGAAGCCAACACCTTTGACCCGGGGAGACACAAATACGGTTCCGTCTGGGGCCGGAAACATTATTGAGACAAACAGCAATGGCTGGTTCCGGATACAGATGGCGCACTCATCACCGGACTGACCTTTCTTGACCCCAAAGATGCCACACGGGTTCAGGGCTTTTCAGCATTTGCAGGTCAGGTTTGGTGACGGGCCGTGGCAGGATGTCAAGGGCTGGATGAAGTGGGCAGTGATACAGGCAGAACAGGAGAATGACATGAATATACTAAAAACTTATGCAGCGTCTGTGTGGTTGCGGAAAGCATGATGGCCGTGAACACGTGCAGTCGCTTACAGCACAACTGCGACTGGGGCCGGCAGACATCCCGAGTCAGATGAGAATGGCATTATTCCGGAGCAGGACAGGGTAATCACACAGGTGGTGATACTGGATACAGATAAAAGCTGATACAGTGTGTGGTAAGACCGCTGCAAATCCTGCGTGCTGACGGGACGTGGGAAAATATTGG\tdp:i:189\n+S\tedge_3\tAGGCATTATGCTCGCAGAGATAAAACACGCTGGAGGGGTCATCCGGCGTCCATTTGAGGCCAAACGGCGTCTCTTTGTCGCCAAATTTAAGATACTGCTCCTCCCGCAGTGCGGGCAGGCAACATGAAAACGCATAAAATGCGGGATTCACTGGCTGCACGCTCAATCTGGCAGGTGCCTCACTTTGGGCGTGGAGCCACGGATGGACTTTGGCCAGACCGAGCCTTCAATACGCTTATCGCCCGTGAACGTCGGAGAGCCTTCCTGTTCAATATCCTCATCAAAGGCAGCAAGTTCATCATAACCCGCCACATCCACCGACTTTTCACGGTAGTTTTGCCGCTTTACCGCCCGTGCACCAGAAGCCACGACCATTGGAAAACGCTTCATAGTGAGCGTGTTATCCCGGTGCTTTTGCCATACCACGGAGCCAGCGCCAGCAGCGACGGAATATCGCGGATGGTCGGCTCAACGTGGGTTTTCATAAAGTTCTCGGCATCACCATCCGTCGGCAACCAGATAAGTGTGTTGCGCTGCTTATGCTCTATGAAGTAGGCATAAACACCCAGCAGCATTTTGGAATAACCAACACGGGCAGACTTCACCACATTCACCTCGCGGATGTAGTCGCTGCCCATCGCATTCATGATGGCCCGCTGAAAGGGCAGTGTTTCCCAGCGCCCTTCCGGTATGCGGATTCTTTCGGGAGATAGTAACTGGCATCCGCCCATTCAACGGCGGTCTGTGGTTCCGGCCTGAACAGTGAGCGAAGCCCGGCGCGGACAAAATGCCGCAGCCTGTTAACCTGACTGTTCGATATATTCACTCAGCAACCCCGGTATCAGTTCATCCAGCGCGGCTGCTTTGTTCATGGCTTTGATGATATCCCGTTTCAGGAAATCAACATGTCGGTTTTCCAGTTCCGGAAAACGCCGCTGCACCGACAGGGGATCCGTCGAGAATACTGGCAATTTCACCTGCGATCCGCGACAGCACGAAAGT'..b'TTGTTTCAGCTACAGTCTTGCGACGCGAATACGGCGGATGGACTGCTATGGCATGACGACGCGTTGTTTTACTGATATCGCCGGGCAGGTTAAAGCCCCGACGGCACGGCTGAAACTGGCGCTGGAAAGCGGGTTGCTGGTAACGGCACTGGATGGCCTGTTCTGGCTGGGAACTCAGCGAATTGCAGCTGATGTGCAGAGACTGCGTCAGTCAGGTATGGTTATAGTCACCGGGAAGTTGAGGTATCAGACTCCTGACCGGAACCACCAGACTGGTTTCTGCTTACACACTTTAAAGCACAGGAGGAATCTTTGTTACCGTATTCGCACTGATTCTGAAATTTACCATTGTTTACCGGGACAGATTACAGACAGGATATTTTATGCGAGATAAATCGAAGTATTAACCGAGCGCAGAAAACAGATTTGGTCTGATTCTTTATATTATACTATTATCAGTTATTTATATATTGATAACAAGACTTAATCTCACAACCACATATTATTCGCTGTATTCATCTCTGGATGAGAATTCACAGGTGACGGAGTATTTTATAATATCCATAGCCACCTTTCTTTTCTGGCGGCTTTATGTTTGTTCTTCATTTATTCTTTCTTTAAACGGAAAAGAGTTGTCGGGAAATTACTTCTGTGCATTTATATTCTTATATATCACACTATGCTATCACTTTTGTTTATTGTCTTTATGTTGTCGGTGCTGAGTGTATGGCAACCGGAGGTAGTGCATCCAATTAGTAGAACATGTGTTTTCGATAAACGCTCCGATCACTTTTTCGTGGATCTCAACTGAGCGTGAGAAGCAGATTGTTTTACGAGCCAACCGCTTAATGCGGTGCGTAGCGTCAGATTATTACGCTCAATGCGTTGGGTGAATATTTTGCCGGTCAGATGCTTATTCTTCGGCACCTCCCGGCCATAGCTGCCCCAGTCATCGCTGGTCAGCATGCCGATGTTGAAGGTGTAAGCAGTGCCAGTAGCTCCCGGCACGTTTGATCGGTTCGGGGACCAAAGTGTAGGCCAGTACACCGCCTGTTTTGGTGTTGTACGCGTACCAGAGCCAGTGTTGCCGGGCTTTACTGCCAACGTAGCTCCATTGCTCATCAAGCTCGCAGATAAGCGCCACATCAGCATGGGCAACAGGCGAAGACGTTATTCGCTTTGGCGCGAGTTTTTAAAGTCCGGATGACGGTGTTAATACCAATTTTCAGTGTCCGGCGGTATCGCGAACCCGGCACCATTAAAGGCCATTTCAGTTATCAGCTCTTTCATACCCGGCTTACGTGCTTGATAAGTATAAGTGAGCTGAAACACACGGTGGCAGTCACGGCAGCGAAATCTGTCACGGCCTTTAGGTTCTGACCATGGCGGTAAACCTGAGCTGACTGACAACGGGGACAATGAATATTAACGCTGGCCATGAGATAACCTCAAAAGCCCGTATTATACATCAGATTCAACTAATTAGAGGCATCACCCATGAGCAATTGTTTTGCAGTGCTCAATGATATTAAATTATTGATGATACTATTGTGTTCTTGGCGAGAATCTTGTTGAAGTAATTGCTGAGATCATTCACAGTGTTTATATCGTTGAACTCAAGAAACTCAGAAGGAAGCAGGCGTTTGATTGCTCCACGTATTCCCCGGACGATCGTTGATGTGTTTGAGTAAGTTTTTAGCGAGACGCCCTCCGCTATGGATACGAGAAGACGCTGTAACTCTTCAGTATTCCATGGAGTACCATGTCGTGCTGGAAAATTGCTGCGGATTCAGACATGATTTTATCTTTATGTTTTCTAGGTACTGCCTTGAGTGTGTGGATATGATAATTATTTATAATGATATTGTTATCTTTATAGATAACTGATATGCAGAATTGTATTGATTTTGTCTACAGTGGGCAAGACAGTGCTAAGAATTTGTGGGGAAAAATAGAGACTCCATGCGGCGTCCTGAGATAGACGGCAGACAGGCATTCTGCCTGAAAGAAAAAGCCGGTTCAGAGAAACCGGCTGACGGATTACCGTCTAACAGTTGGTCGCTACCTTAAAATACTTCTGCAACAGGCACACCGGCAACTTTTTCCACTCTTTAACCCGATACCGGATCATCTGCGGAAACGTTCCTTGTACTCATATCCACGTGCAGCCATGGTGTGCATGGTGTTGGCCAGTGTCCTTGATGAGATGCCGGAGATTTCAAGAGGATCATCGGCAGACTCACATAGGTGGTGTGGATTTCCAGCTTGCCGTCTTCAGCAACTGTTCGGGTGAAGTTGTGAATATCAGACCAATCACATCCATGACATTGTTTGGGTAAATGCGCACATACAGCATGGTGCCGTTTTAATGTCGATCCGAAATAACAACTCTTCGAGAATGACAGTTGCTCGTAATCGCTAGTCGGCGCAAAGGGACTGCTCTTTTATCTTCTTAACAACCTGTAGGATTTTCTTTGCCTTAGTTCTCAGATATAGCCATAGTGAAGGAATTATTAATAGAAACCAACTGCCACAAGTATATAGATATGCTTGAATATCTGTTCCTATATATGGTTCTGTAAGCATCATGCCGGTAAAGCCTAGAGAACATAACAATAAAAAGAATGCCAAATATAAAGTAAGTGTTGCGAATAAGATAATAATATCCCCACCGTGAAGGATATCTGTTTTTGTTGTATTCATAATGAACCCCATATTCACCTGAATGTATTTTAATCTCTTCAGGTGAATATGGCAATACTGTTTTGTACTCTATTGTTTTATTCCGTCCTTATCATCTCCATTAATATTTTTCAGTTTTTCTTCACGAACGCCGTGTTCTGCGTATATTGGTGTTTCCGCCGGCAATAATATCTTTGACGGAAGAAACCATATTTCCCAGCATATTAACGCCGTCACGTCCACCCAGAAAATTAATCACATGGTCTGGCAGATAAGCCTGAAGTGCAAAACGCCCGCAACCAGTGTGGTACAGGCGCGGGCATAAATCATCAAAATCCCGCCATGCTGAACACCCCGTCACAGAATTTATCTGGACATTCATTAGTGCTGCAGCGTACAGAGCATTCAGTATGGTGCCGCCAACTACGATGGCGACCGATGCAAAAGAACCCGAACACCATCAGCAGTGGCCTGATCATGCTGTCTATCAGGTAGATGTAACCGTAAGCGGCCCGACTTCCTCTGTCCTGACTTGTTCCCGGTGGGTTGCGGCCCACAGGGGCCGGCGGCGCATCCAATCAGTACACTGACTATCCAGTTACCGATGCCGGTCATCCAGAAGATAAACGGAATAAACGGCAGGTAAATGGATAACGAAAACCGGCACAGAACAGCAAAACAGCAGGAAGTAGAGCGGTGGTGCAGCTGCTTCCAGAAAAGCCTTTGCGGCATCAGATAAGCCGCTAACAGCATTGACCAGTCGACCAAAATGGAGTTGCTGCCGGCAGTGGAAAGCACCTGACGGTGGTATAACCCGCCCAGATGGTTTCGGTTGTGA\tdp:i:311\n+L\tedge_1\t+\tedge_4\t+\t0M\tRC:i:10\n+L\tedge_1\t-\tedge_6\t-\t0M\tRC:i:4\n+L\tedge_1\t-\tedge_2\t+\t0M\tRC:i:6\n+L\tedge_2\t+\tedge_5\t-\t0M\tRC:i:4\n+L\tedge_2\t+\tedge_3\t-\t0M\tRC:i:6\n+L\tedge_3\t-\tedge_4\t+\t0M\tRC:i:6\n+L\tedge_4\t+\tedge_5\t+\t0M\tRC:i:2\n+L\tedge_4\t+\tedge_6\t+\t0M\tRC:i:3\n+L\tedge_7\t+\tedge_7\t+\t0M\tRC:i:26\n+P\tcontig_2\tedge_4-,edge_1-,edge_2+\t*\n+P\tcontig_3\tedge_4-,edge_3+\t*\n+P\tcontig_5\tedge_4+,edge_5+\t*\n+P\tcontig_6\tedge_4+,edge_6+,edge_1+,edge_4+\t*\n+P\tcontig_4\tedge_4+\t*\n+P\tcontig_7\tedge_7+\t*\n' |
| b |
| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/flye/assembly_infos.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/flye/assembly_infos.tsv Wed Jul 03 12:07:36 2024 +0000 |
| b |
| @@ -0,0 +1,7 @@ +#seq_name length cov. circ. repeat mult. alt_group graph_path +contig_2 4031962 189 N N 17 * -4,-1,2 +contig_3 791086 155 N N 15 * -4,3 +contig_6 317090 147 N N 16 * 4,6,1,4 +contig_5 220050 151 N N 15 * 4,5 +contig_7 155068 311 Y Y 28 * 7 +contig_4 10645 254 N Y 18 * 4 |
| b |
| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/polypolish/polished_assembly.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/polypolish/polished_assembly.fasta Wed Jul 03 12:07:36 2024 +0000 |
| b |
| b'@@ -0,0 +1,4 @@\n+>contig_6_polypolish\n+ATAACCCGGATATTTTTGATCTTACCGAAGCGCAGCAACTGACTGCTGAAGAGCAGGTCGAAAAATGGGTGGATGGCAGGAAAAAAATACTGTGGGACAGCAAAAAGCGACGCAATGAGGCGCTCGACTGCTTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGATCTCAGTGCACTGCTGGCGAGCCTGCAGGAAGAGGATGGTGCAGCAACCAACAAGAAAACACTGGCAGAATACGCCCGTGCCTTATCCGGAGAGGATGAATGACGCGACAGGAAGAACTTGCCGCTGCCCGTGCGGCACTGCATGACCTGATGACAGGAAAACGGGTGGCAACGGTACAGAAAGACGGACGGCGAGTGGAGTTTACGACCACTTCCGTGTCTGACCTGAAAAATACATTGCTGAGCTGGAAGTGCAGACCGGCATGACACAGCGACGCAGGGGACCAGCAGGATTTTATGTATGAAAATGTCCACCATTCCCACCCTTCTGGGGCCGGACGGCATGACATCGCTGCGTGAATATGCCGGTTATCACGGCGGTGGCAGCGGATTTGGTGGGCAGTTGCGGGCGTGGAACCCACCGGGTGAAAGTGTGGATGCAGCCCTGCTGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTGGTACGCAATAACGGCTATGCCGCCAACGCCATCCAGTTGCATCAGGATCATATCGTCGGGTCTTTTTTCCGGCTCAGTCATCGCCCAAGCTGGCGCTATCTGGGCATCGGGGAGGAAGAAGCCCGTGCCTTTTCCCGCGAGGTTGAAGCGGCATGGAAAGAGTTTGCCGAAGATGACTGTTGCTGCATTGACGTTGAGCGAAAACGCACGTTTACCATGATGATTCGGGAAGGTGTGGCCATGCACGCCTTTAACGGTGAACTGTTCGTTCAGGCCACCTGGGATACCCGTCCCTCGCGACTGTTCCGGACACAGTTCCGGATGGTCAGCCCGAAGCGCATCAGCAACCCGAACAATACCGGCGACAGCCGGAACTGCCGTGCCGGTGTGCAGATTAATGACAGCGGTGCGGCGCTGGGATATTACGTCAGCGAGGACGGGTATCCTGGCTGGATGCCGCAGAAATGGACATGGATACCCCGTGAGTTACCCGGCGGCGCGCCTCGTTCATTCACGTTTTGAACCCGTGGAGGACGGGCAGACCCGCGGTGCAAATGTGTTTTACAGCGTGATGGAGCAGATGAAGATGCTCGACACGCTGCAGAACACGCAGCTGCAGAGCGCCATTGTGAAGGCGATGTATGCCGCCACCATTGAAAGTGAGCTGGATACGCAGTCAGCGATGGATTTTATTCTGGGCGCGAACAGTCAGGAGCAGCGGGAAAGGCTGACGGGCTGGATTGGTGAAATTGCCGCGTATTACGCCGCAGCACCGGTCCGTCTGGGAGGCGCAAAAGTGCCGCACCTGATGCCGGGGACTCACTGAACCTGCAGACGGCTCAGGACACGGATAACGGCTACTCCGTGTTTGAGCAGTCACTGCTGCGGTATATCGCTGCCGGGCTGGGTGTCTCGTATGAGCAGCTTTCCGGAATTACGCCCAGATGAGCTACTCCACGGCACGGGCCAGTGCGAACGAGTCGTGGGCGTACTTTATGGGGCGGCGAAAATTCGTCGCATCCCGTCAGGCGAGCCAGATGTTTCTGTGCTGGCTGGAAGAGGCCATCGTTCGCCGCGTGGTGACGTTACCTTCAAAAGCGCGCTTCAGCTTTCAGGAAGCCCGCAGTGCTGGGGGAACTGCGACTGGATAGGCTCCGGTCGTATGGCCATCGATGGTCTGAAAGAAGTTCAGGAAGCGGTGATGCTGATAGAAGCCGGACTGAGCACCTACGAGAAAGAGTGCGCGAAACGCGGTGACGACTATCAGGAAATTTTTGCCCAGCAGGTCCGTGAAACGATGGAGCGCCGCGCAGCTGGTCTTAAACCGCCCGCCTGGGCGGCTGCGGCATTTGAATCCGGGCTGCGACAATCAACAGAGGAGGAGAAGAGTGACAGCAGAGCTGCGTAATCTCCCGCATATTGCCAGCATGGCTTTTAATGAGCCGCTGATGCTTGAACCCGCCTATGCGCGGGTTTCTTTGTGCGCTTGCAGGCCAGCTTGGGATCAGCCGCCTGACGGATGCAGTATCCGGCGACAGCCTGACTGCCGGAGAGGCACCCGCGGCGCTGGCGTTATCCGGTGATGATGACGGACCACGACAGGCCCGGAGTTATCAGGTCATGAACGGCATCGCCGTGCTGCCGGTGTCCGGTACGCTGGTCAGCCGGACGCGGGCGCTGCAGCCGTATTCGGGAATGACCGGTTACAACGGCATTATCGCCCGTCTGCAACAGGCTGCCAGCGATCCGATGGTGGACGGCATTCTGCTCGATATGGACACACCGGGCGGGATGGTGGCGGGAGCATTTGACTGTGCTGACATCATCGCCCGTGTGCGAGACATAAAACCGGTATGGGCGCTGGCCAACGACATGAACTGCAGTGCAGGTCAGCTGCTTGCCAGCGCCGCCTCCCGGCGTCTGGTCACGCAGACCGCCCGGACAGGCTCCATCGGCGTCATGATGGCTCACAGTAATTACGGTGCTGCCTGGAGAAACAGGGCGTGGAAATCACGCTGATTTACAGCGGCAGCCATAAGGTGGATGGCAACCCTACAGCCATCTACCGGGTGATGTCCGGGAAACACTGCAGTCCCGGATGGATGCAACCCGCCGGATGTTTGCGCAGAAGGTGTCGGCATATACCGGCCTGTCCGTGCAGGCTGTGCTGGATACCGAGGCTGCAGTGTACAGCGGTCAGGAGGCCATTGATGCCGGACTGGCTGATGAACTTGTCAACAGCACCGATGCGATCACCGTTATGCGTGATGCACTGGATGCACGTAAATCCCGTCTCTCAGGAGGGCGAATGACCAAAGAGACTCAATCAACAACTGTTTCAGCCACTGCTTCGCAGGCTGACGTTACTGGCGTGGTGCCAGCGACGGAGGGCGAAAACGCCAGCGCGGCGCAGCCGGACGTGAACGCGCAGATCACCGCTGCGGTTGCGGCAGAAAACAGCCGCATTATGGGGATCCTCAACTGTGAGGAGGCTCACGGACGCGAAGAACAGGCCCGCGTGCTGGCAGAAACCCCGGTATGACCGTGGAAACGGCCCGCCGCATTCTGGCCGCAGCACCACAGAGTGCACAGGCGCGCAGTGATACTGCGCTGGATCGTCTGATGCAGGGGCACCGGCACCGCTGGCTGCAGGTAACCCGGCATCTGATGCCGTTAACGATTTGCTGAACACACCAGTGTAAGGGATGTTTATGACGAGCAAAGAAACCTTTACCCATTACCAGCCGCTGGGCAACAGTGACCCGGCTCATACCGCAACCGCGCCCGGCGGATTGAGTGCGAAAGCGTCTGCAATGACCCCGCTGATGCTGGACACCGCCACCCGTAAGCTGGTTGCGTGGGATGGCACCACCGACGGTGCTGCCGTTGGCATTCTTGCGGTTGCTGCTGACCAGACCAGCACCACGCTGACGTTCTACAAGTCCGGCACGTTCCGTTATGAGGATGTGCTCTGGCCGGAGGCTGCCAGCGACGAGACGAAAAAACGGACCGCGTTTGCCGGAACGGCAATCAGCATCGTTTAACCTGACCCTTCATCACTAAAGGCCGCCTGTGCGGCTTTTTTTACGGGATTTTTTTATGTCGATGTACACAACCGCCCAGCTGCTGGCGGCAAATGAGCAGAAATTTAAGTTTGATCCGCTGTTTCTGCGTCTCTTTTTCCGTGAGAGCTATCCCTTCACCACGGAGAAAGTCTATCTCACAAATTCCGGGACTGGTAAACATGGCGCTGTACGTTTCGCCGATTGTTTCCGGTGAGGTTATC'..b'ATTACGCGTTGAAAAAATATATGTTTTATCTTCTGAGGCACCTGACTTCACGGAGGATATTTATTCCTGTAGGCTAATCACTGTGTCTGGGTAAACAACAGATATCTGGTGGCGATATGCAGGAACGTATTGATTATCATATTGAGAAATATCAGTTCAGGGCGAGGAATGAGTCTCCACGACTGATGCGTCAGTGGGCTTATGTCATGCGTGAATGCCGGGAGACCAGGGCTGGAGCCAGGGAGCGACTGCGGACAGCATTACTGAATGTTGATTATGTGACCAGTTTTGAGCTGCCGTTTCGTCTGCTGTTAACCCGGACACCGCAGATGATTGACACTCTGCGTCGGGAATGCCTGCTCAGCCAGAAAAAAGCCCTGTTCAACGGGCGGCAGCGGGGATGTGTATACAGTCTGCAGAATGACTTATCCGGTGTGCCGGATTGTTTCAGCTACAGTCTTGCGACGCGAATACGGCGGATGGACTGCTATGGCATGACGACGCGTTGTTTTACTGATATCGCCGGGCAGGTTAAAGCCCCGACGGCACGGCTGAAACTGGCGCTGGAAAGCGGGTTGCTGGTAACGGCACTGGATGGCCTGTTCTGGCTGGGAACTCAGCGAATTGCAGCTGATGTGCAGAGACTGCGTCAGTCAGGTATGGTTATAGTCACCCGGGAAGTTGAGGTATCAGACTCCCTGACCGGAACCACCAGACTGGTTTCTGCTTACACACTTTAAAGCACAGGAGGAATCTTTGTTACCGTATTCGCACTGATTCTGAAATTTACCATTGTTTACCGGGACAGATTACAGACAGGATATTTTATGCGAGATAAATCGAAGTATTAACCGAGCGCAGAAAACAGATTTGGTCTGATTCTTTATATTATACTATTATCAGTTATTTATATATTGATAACAAGACTTAATCTCACAACCACATATTATTCGCTGTATTCATCTCTGGATGAGAATTCACAGGTGACGGAGTATTTTATAATATCCATAGCCACCTTTCTTTTCTGGCGGCTTTATGTTTGTTCTTCATTTATTCTTTCTTTAAACGGAAAAGAGTTGTCGGGAAATTACTTCTGTGCATTTATATTCTTATATATCACACTATGCTATCACTTTTGTTTATTGTCTTTATGTTGTCGGTGCTGAGTGTATGGCAACCGGAGGTAGTGCATCCAATTAGTAGAACATGTGTTTTTCGATAAACGCTCCGATCACTTTTTCGTGGATCTCAACTGAGCGTGAGAAGCAGATTGTTTTACGAGCCAACCGCTTAATGCGGGTGCGTAGCGTCAGATTATTACGCTCAATGCGTTGGGTGAATATTTTGCCGGTCAGATGCTTATTCTTCGGCACCTCCCGGCCATAGCTGCCCCAGTCATCGCTGGTCAGCATGCCGATGTTGAAGGTGTAAGCAGTGCCAGTAGCTCCCGGCACGTTTGATCGGTTCGGGGACCAAAGTGTAGGCCAGTACACCGCCTGTTTTGGTGTTGTACGCGTACCAGAGCCAGTGTTGCCGGGCTTTACTGCCAACGTAGCTCCATTGCTCATCAAGCTCGCAGATAAGCGCCACATCAGCATGGGCAACAGGCGAAGACGTTATTCGCTTTGGCGCGAGTTTTTAAAGTCCGGATGACGGTGTTAATACCAATTTTCAGTGTCCTGGCGGTATCGCGAACCCCGGCACCATTAAAGGCCATTTCAGTTATCAGCTCTTTCATACCCGGCTTACGTGCTTGATAAGTATAAGTGAGCTGAAACACACGGTGGCAGTCACGGCAGCGAAATCTGTCACGGCCTTTAGGGTTCTGACCATGGCGGTAAACCTGAGCTGACTGACAACGGGGACAATGAATATTAACGCTGGCCATGAGATAACCTCAAAAGCCCGTATTATACATCAGATTCAACTAATTAGAGGCATCACCCATGAGCAATTGTTTTTGCAGTGCTCAATGATATTAAATTATTGATGATACTATTGTGTTCTTGGCGAGAATCTTGTTGAAGTAATTGCTGAGATCATTCACAGTGTTTATATCGTTGAACTCAAGAAACTCAGAAGGAAGCAGGCGTTTGATTGCTCCACGTATTCCCCCGGACGATCGTTGATGTGTTTGAGTAAGTTTTTTTAGCGAGACGCCCTCCGCTATGGATACGAGAAGACGCTGTAACTCTTCAGTATTCCATGGAGTACCATGTCGTGCTGGAAAATTGCTGCGGATTCAGACATGATTTTATCTTTATGTTTTCTAGGTACTGCCTTGAGTGTGTGGATATGATAATTATTTATAATGATATTGTTATCTTTATAGATAACTGATATGCAGAATTGTATTGATTTTGTCTACAGTGGGCAAGACAGTGCTAAGAATTTGTGGGGAAAAATAGAGACTCCATGCGGCGTCCTGAGATAGACGGCAGACAGGCATTCTGCCTGAAAAGAAAAAGCCGGTTCAGAGAAAACCGGCTGACGGATTACCGTCTAACAGTTGGTCGCTACCTTAAAATACTTCTGCAACAGGCACACCGGCAACTTTTTCCCACTCTTTAACCCGATACCGGATCATCTGCGGGAAACGTTCCTTGTACTCATATCCACGTGCAGCCATGGTGTGCATGGTGTTGGCCAGTGTCCTTGATGAGATGCCGGAGATTTCAAGAGGGATCATCGGCAGACTCACATAGGTGGTGTGGATTTCCAGCTTGCCGTCTTCAGCAACTGTTCGGGTGAAGTTGTGAATATCCAGACCAATCACATCCATGACATTGTTTGGGTAAATGCGCACATACAGCATGGTGCCGTTTTTAATGTCGATCCCGAAATAACAACTCTTCGAGAATGACAGTTGCTCGTAATCGCTAGTCGGCGCAAAGGGACTGCTTTCTTTTATCTTCTTAACAACCTGTAGGATTTTCTTTGCCTTAGTTCTCAGATATAGCCATAGTGAAGGAATTATTAATAGAAACCAACTGCCACAAGTATATAGATATGCTTGAATATCTGTTCCTATATATGGTTCTGTAAGCATCATGCCGGTAAAGCCTAGAGAACATAACAATAAAAAAGGAATGCCAAATATAAAGTAAGTGTTGCGAATAAGATAATAATATCCCCACCAGGAAGGATATCTGTTTTTTGTTGTATTCATAATGAACCCCCATATTCACCTGAATGTATTTTAATCTCTTCAGGTGAATATGGCAATACTGTTTTGTACTCTATTGTTTTATTCCGTCCTTATCATCTCCATTAATATTTTTCAGTTTTTCTTCACGAACGCCAGGTGTTCTGCGTATATTGGTGTTTCCGCCGGCAATAATATCTTTGACGGAAGAAACCATATTTCCCAGCATATTAACGCCGTCACGTCCACCCAGAAAATTAATCACATGGTCTGGCAGATAAGCCTGAAGTGCAAAAACGCCCGCAACCAGTGTGGTACAGGCGCGGGCATAAATCATCAAAAATCCCGCCATGCTGAACACCCCCGTCACAGAATTTATCTGGACATTCATTAGTGCTGCAGCGTACAGAGCATTCAGTATGGTGCCGCCAGCCACGATGGCGACCGATGCAAAAAAGAACCCGAACACCATCAGCAGTGGCCTGATCATGCTGTCTATCAGGTAGATGTAACCGTAAGCGGCCCGACTTCCTCTGTCCTGACTTGTTCCCAGGTGGGTTGCGGCCCACAGGGGGCCGGCGGCGCATCCAATCAGTACACTGACTATCCAGTTACCGATGCCGGTCATCCAGAAGATAAACGGAATAAACGGCAGGTAAATGGATAACGAAAAACCGGCACAGAACAGCAAAAACAGCAGGAAGTAGAGCGGTGGTGCAGCTGCTTCCAGAAAAGCCTTTGCGGCATCAGATAAGCCGCTAACAGCATTGACCAGTCGACCAAAATGGAGTTGCTGCCGGCAGTGGAAAGCACCTGACGGTGGTATAACCCGCCCAGATGGTTTCGGTTGTGA\n' |
| b |
| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/summarize/bwa_output.json --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/summarize/bwa_output.json Wed Jul 03 12:07:36 2024 +0000 |
| [ |
| @@ -0,0 +1,1 @@ +[{"analysis_software_version": "2.2.1", "reference_database_version": "tests/data/dummy/flye/assembly.fasta", "analysis_software_name": "bwa", "results": [{"name": "bwa_report", "file_path": "tests/data/dummy/bwa/aligned_R1.bam", "hid": "12345", "galaxy_id": null, "content": []}, {"name": "paired_second_file_path", "file_path": "tests/data/dummy/bwa/aligned_R2.bam", "hid": "12345", "galaxy_id": null, "content": []}], "tool_has_database": true}] \ No newline at end of file |
| b |
| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/summarize/fastqc_output.json --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/summarize/fastqc_output.json Wed Jul 03 12:07:36 2024 +0000 |
| [ |
| b'@@ -0,0 +1,1 @@\n+[{"analysis_software_version": "0.12.1", "reference_database_version": null, "analysis_software_name": "fastqc", "results": [{"name": "fastqc_report", "file_path": "tests/data/dummy/fastqc/fastqc_report.txt", "hid": "12345", "galaxy_id": null, "content": [{"basic_statistics": [{"Measure": "Filename", "Value": "SRR8335315_150M_fastq"}, {"Measure": "File type", "Value": "Conventional base calls"}, {"Measure": "Encoding", "Value": "Sanger / Illumina 1.9"}, {"Measure": "Total Sequences", "Value": "150000"}, {"Measure": "Total Bases", "Value": "1 Gbp"}, {"Measure": "Sequences flagged as poor quality", "Value": "0"}, {"Measure": "Sequence length", "Value": "5000-208721"}, {"Measure": "%GC", "Value": "49"}], "per_base_sequence_quality": [{"Base": "1", "Mean": 2.8365066666666667, "Median": 2.0, "Lower Quartile": 1.0, "Upper Quartile": 4.0, "10th Percentile": 1.0, "90th Percentile": 6.0}, {"Base": "2", "Mean": 5.008253333333333, "Median": 3.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 12.0}, {"Base": "3", "Mean": 4.9963733333333336, "Median": 4.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 10.0}, {"Base": "4", "Mean": 5.492173333333334, "Median": 4.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 12.0}, {"Base": "5", "Mean": 5.953973333333333, "Median": 5.0, "Lower Quartile": 3.0, "Upper Quartile": 8.0, "10th Percentile": 1.0, "90th Percentile": 11.0}, {"Base": "6", "Mean": 5.105973333333333, "Median": 4.0, "Lower Quartile": 2.0, "Upper Quartile": 7.0, "10th Percentile": 1.0, "90th Percentile": 10.0}, {"Base": "7", "Mean": 6.98078, "Median": 6.0, "Lower Quartile": 4.0, "Upper Quartile": 9.0, "10th Percentile": 2.0, "90th Percentile": 13.0}, {"Base": "8", "Mean": 7.78512, "Median": 6.0, "Lower Quartile": 4.0, "Upper Quartile": 11.0, "10th Percentile": 2.0, "90th Percentile": 15.0}, {"Base": "9", "Mean": 9.664386666666667, "Median": 8.0, "Lower Quartile": 5.0, "Upper Quartile": 13.0, "10th Percentile": 3.0, "90th Percentile": 18.0}, {"Base": "10-4999", "Mean": 12.829364350033384, "Median": 11.984569138276552, "Lower Quartile": 6.997795591182364, "Upper Quartile": 17.925851703406813, "10th Percentile": 3.997995991983968, "90th Percentile": 22.98977955911824}, {"Base": "5000-9999", "Mean": 12.78321836605465, "Median": 11.9984, "Lower Quartile": 7.0, "Upper Quartile": 17.8802, "10th Percentile": 4.0, "90th Percentile": 23.0}, {"Base": "10000-14999", "Mean": 12.457365374925567, "Median": 11.4172, "Lower Quartile": 6.94, "Upper Quartile": 17.1414, "10th Percentile": 3.9632, "90th Percentile": 22.7734}, {"Base": "15000-19999", "Mean": 12.328473958980618, "Median": 11.2712, "Lower Quartile": 6.755, "Upper Quartile": 17.0012, "10th Percentile": 3.809, "90th Percentile": 22.425}, {"Base": "20000-24999", "Mean": 11.82052704708205, "Median": 10.740273037542662, "Lower Quartile": 6.310921501706485, "Upper Quartile": 16.367576791808872, "10th Percentile": 3.4976109215017064, "90th Percentile": 21.71706484641638}, {"Base": "25000-29999", "Mean": 10.868158810996196, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "30000-34999", "Mean": 8.860082551892548, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "35000-39999", "Mean": 8.747852380952377, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "40000-44999", "Mean": 9.24235, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "45000-49999", "Mean": 9.2681, "Median": null, "Lower Quartile": null, "Upper Quartile": null, "10th Percentile": null, "90th Percentile": null}, {"Base": "50000-54999", "Mean": 9.858916666666673, "Median": null, "Lower Quartile": null, "U'..b' Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "150000-154999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "155000-159999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "160000-164999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "165000-169999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "170000-174999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "175000-179999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "180000-184999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "185000-189999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "190000-194999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "195000-199999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "200000-204999", "Illumina Universal Adapter": 0.025999999999999, "Illumina Small RNA 3\' Adapter": 0.0306666666666639, "Illumina Small RNA 5\' Adapter": 0.0153333333333319, "Nextera Transposase Sequence": 0.0913333333333398, "PolyA": 1.825999999999928, "PolyG": 0.1286666666666609}, {"Position": "205000-208710", "Illumina Universal Adapter": 0.0259999999999997, "Illumina Small RNA 3\' Adapter": 0.0306666666666647, "Illumina Small RNA 5\' Adapter": 0.0153333333333323, "Nextera Transposase Sequence": 0.0913333333333354, "PolyA": 1.8260000000000205, "PolyG": 0.1286666666666718}]}]}, {"name": "html_report_path", "file_path": "tests/data/dummy/fastqc/fastqc_report.html", "hid": "12345", "galaxy_id": null, "content": []}], "tool_has_database": false}]\n\\ No newline at end of file\n' |
| b |
| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/summarize/filtlong_output.json --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/summarize/filtlong_output.json Wed Jul 03 12:07:36 2024 +0000 |
| [ |
| @@ -0,0 +1,1 @@ +[{"analysis_software_version": "0.2.1", "reference_database_version": null, "analysis_software_name": "filtlong", "results": [{"name": "filtlong_report", "file_path": "tests/data/dummy/filtlong/filtered_sample.fastq.gz", "hid": "12345", "galaxy_id": null, "content": []}], "tool_has_database": false}] \ No newline at end of file |
| b |
| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/summarize/flye_output.json --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/summarize/flye_output.json Wed Jul 03 12:07:36 2024 +0000 |
| [ |
| b'@@ -0,0 +1,1 @@\n+[{"analysis_software_version": "2.9.1", "reference_database_version": null, "analysis_software_name": "flye", "results": [{"name": "flye_report", "file_path": "tests/data/dummy/flye/assembly.fasta", "hid": "12345", "galaxy_id": null, "content": [{"name": "contig_1", "length": 6770, "sequence": "AGTTTTTTGTGTGTTGTTTTATTGTTTTGCGTGGTTTGTTTTTATTGTTATTTCATTAAGGAAGGTAAATTCAGGATGGCAGTCTGTAGATAATCGGAGGTCACTTATGCTACATGATCACGTGGCAGAATGTCTGGAGAAAAAGGACTGTACCGGAGAGCAGCTGAACGATGGGCAAAAGTGATGGTACAGCTAAGTGATGACCAGAAAGAAAAGTGGCGGCACAGAAACGAGCAGAGTGTTTGCGTAAGGCGCGCGGACTCCGGTTTCACCGGTGAACCTGACCGAAATAAAACAAGCGGTCAACAGACTACATTCTGAGTTGGGAATGGATTTGAAGAGCGGCGGGTATTCCGACGATATAAAGGGACAGGAGAACAGAATACGTCCGGAAACGCGCGGTCAAAAAATGCTAAAAATATCTGAGAGAGTTATTGCCTGTTACCATAAGAAAAAGCGACTTTAGTGGTCGCTTTTGTGTCATATATAAGTCGTTTAAGTAAACCTGTCTGAACAGGTGCTCTGGTCGTGTTTGTCTTTGTTGGGTACAAATTGAGAATATTTTCATTAATTAATCTTCTTCTGCAGGCTTCAATAACCCACGCTGAAAAATTACCTGAACCTTTCAGGTCAAGAGCGATGTTAATTTGTTCAATTATCTGGTTTGGAAATCGGATGTTGCGGGTTGTTGTTCTGCGGGTTCTGTTCTTTGATGACATAATGTTGCCCCGTATTCAGTGTTGCTGATTTGTATTATCTGAAGTTGCTTTTACGCTAATTTGATGCAGATCAATTAATACGATACCTGCGTAATAATTGATTATTTCTCGTGGTTTGATGGCGTACACATGTCGTGATAAACCTCATGTAGATGATAATTATTATCATTTTCGTGGGTCCTTTCCGGCGATCCGACAGGTTACGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTTTTATTTAAAATACCCCTGAAAGAAAGGAAACGACAGGTGCTGAAAACGGGCTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTGTCCGTGGAATGAACAATGGAAGTCAACAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCAGGAACAGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGATTCTGCCGCCGTCATAAAATGGTATGCCGAAAGGGATGCTGAAATTGAGAACGAAAGCTGCGCCGGGAAGTTGAAGAACTGCGGCAGGCCAGCGAGACAGATCTCCAGCCGGGGACTATTGAGTACGAACGCCATCGACTTACGCGTGCGCAGGCCGACGCACAGGAGCTGAAAATGCCAGAGACTCCGCTGAAGTGGTGGAAACCGCATTCTGTACTTTCGTGCTGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCATTTTGTCCGCGCCGGGCTTCGCTCACTGTTCAGGCCGGAGCCACAGACCGCCGTTGAATGGGCGGATGCCAGTTACTATCTCCCGAAAGAATCCGCATACCGTGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGCGAGGTGAATGTGGTGAAGTCTGCCCGTGTTGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTTCATAGAGCATAAGCAGCGCAACACACTTATCTGGTTGCCGACGGATGGTGATGCCGAGAACTTTATGAAAACCCACGTTGAGCCGACCATCCGCGATATTCCGTCGCTGCTGGCGCTGGCTCCGTGGTATGGCAAAAGCACCGGGATAACACGCTCACTATGAAGCGTTTTTCCAATGGTCGTGGCTTCTGGTGCCCGGGCGGTAAAGCGGCAAAAACTACCGTGAAAAGTCGGTGGATGTGGCGGGTTATGATGAACTTGCTGCCTTTGATGAGGATATTGAACAGGAAGGCTCTCCGACGTTCTCGGGCGATAAGCGTATTGAAGGCTCGGTCTGGCCAAAGTCCATCCGTGGCTCCACGCCCAAAGTGAGAGCACCTGCCAGATTGAGCGTGCAGCCAGTGAATCCCGCATTTTATGCGTTTTCATGTTGCCTGCCCGCACTGCGGGAGGAGCAGTATCTTAAATTTGGCGACAAAGAGACGCCGTTTGGCCTCAAATGGACGCCGGATGACCCTCCAGCGTGTTTTATCTCTGCGAGCATAATGCCTGCGTCATCCGCCAGCAGGAGCTGGACTTTACTGATGCCCGTTATATCTGCGAAAAGACCGGGATCTGGACCCGTGATGGCATTCTCTGGTTTCGTCATCCGGTGAAGAGATTGAACCGCCTGACAGTGTGACCTTTCACATCTGGACGGCGTACAGCCCGTTCACCACGGGTGCAGATTGTCAAAGACTGGATGAAGACGAAAGGGATACGGGAAAACGTAAAACCTTCGTGAACACCACGCTCGGTGAGACGTGGGAAGCGAAAATCGGCGAACGTCCGGATGCTGAGGTGATGGCGGAGCGGAAGAGTATTATTCAGCGCCCGTTCCTGATCGTGTGGCTTACCTGACCGCCGGTATCGACTCCCAGCTGGACCGCTACGAAATGCGCGTATGGGGATGGGGGCCGGGTGAGAAAGCTGGCTGATTGACCGGCAGATTATTATGGGCCGCCACGACGATGAACAGACGCTGCTGCGTGGATGAGGCCATCAATAAAACCTATACCCGCCGGAATGGTGCAGAAATGTCGGTATCCCGTATCTGCTGGGATACTGGCGGGATTGACCCGACCATTGTGTATGAACGCTCGAAAAACATGGGCTGTTCCGGGTGATCCCATTAAAGGGCATCCGTCTACGGAAAGCCGGTGGCCAGCATGCCACGTAAGCGAAACAAAACGGGTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCACACTGACGCCGGAAGGGATGAACCGCTTCCGGTGCCGTTCACTTCCGAATAACCCGGATATTTTGATCTTACCGAAGCGCAGCAACTGACTGCTGAAGAGCAGGTCGAAAAATGGGTGGATGGCAGGAAAAAATACTGTGGGACAGCAAAAGCGACGCAATGAGGCGCTCGACTGCTTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCGCTGGCAGCTGGATCTCAGTGCACTGCTGGCGAGCCTGCAGGAAGAGGATGGTGCAGCAACCAACAAGAAAACACTGGCAGAATACGCCCGTGCCTTATCCGGAGAGGATGAATGACGCGACAGGAAGAACTTGCCGCTGCCCGTGCGGCACTGCATGACCTGATGACAGGAAAACGGGTGGCAACGGTACAGAAAGACGGACGGCGAGTGGGTTTACGACCACTTCCGTGTCTGACCTGAAAAATACATTGCTGAGCTGGAAGTGCAGACCGGCATGAC'..b'TGCCGGGGACTCACTGAACCTGCAGACGGCTCAGGACACGGATAACGGCTACTCCGTGTTTGAGCAGTCACTGCTGCGGTATATCGCTGCCGGGCTGGGTGTCTCGTATGAGCAGCTTTCCGGAATTACGCCCAGATGAGCTACTCCACGGCACGGGCCAGTGCGAACGAGTCGTGGGCGTACTTTATGGGGCGGCGAAAATTCGTCGCATCCCGTCAGGCGAGCCAGATGTTTCTGTGCTGGCTGGAAGAGGCCATCGTTCGCCGCGTGGTGACGTTACCTTCAAAAGCGCGCTTCAGCTTTCAGGAAGCCCGCAGTGCTCGGGGAACTGCGACTGGATAAGCTCGGTCGTATGGCCATCGATGGTCTGAAGAAGTTCAGGAAGCGGTGATGCTGATAGAAGCCGGACTGAGCACCTACGAGAAAGTGCGCGAAACGCGGTGACGACTATCAGGAAATTTTGCCCAGCAGGTCCGTGAAACGATGGAGCGCCGCGCAGCTGGTCTTAAACCGCCCGCACGGGCGGCTGCGGCATTGAATCCGGGCTGCGACAATCAACAGAGGAGGAGAAGAGTGACAGCAGAGCTGCGTAATCTCCCGCATATTGCCAGCATGGCTTTTAATGAGCCGCTGATGCTTGAACCCGCCTATGCGCGGGTTTTCTTTGTGCGCTTGCAGGCCAGCTTGGGATCAGCCGCCTGACGGATGCAGTATCCGGCGACAGCCTGACTGCCGGAGAGGCACCCGCGGCGCTGGCGTTATCCGGTGATGATGACGGACCACGACAGGCCCGGAGTTATCAGGTCATGAACGGCATCGCCGTGCTGCCGGTGTCCGGTACGCTGGTCAGCCGGACGCGGGCGCTGCAGCCGTATTCGGGAATGACCGGTTACAACGGCATTATCGCCCGTCTGCAACAGGCTGCCAGCGATCCGATGGTGGACGGCATTCTGCTCGATATGGACACACCGGGCGGGATGGTGGCGGGAGCATTTGACTGTGCTGACATCATCGCCCGTGTGCGAGACATCAAACCGGTATGGGCGCTGGCCAACGACATGAACTGCAGTGCAGGTCAGCTGCTTGCCAGCGCCGCCTCCCGGCGTCTGGTCACGCAGACCGCCCGGACAGGCTCCATCGGCGTCATGATGGCTCACAGTAATTACGGTGCTGCCTCGGAGAAACAGGGCGTGAAATCACGCTGATTTACAGCGGCAGCCATAAGGTGGATGGCAACCCTACAGCCATCTACCGGGTGATGTCCGGAAACACTGCAGTCCCGGATGGATGCAACCCGCCGGATGTTTGCGCAGAAGGTGTCGGCATATACCGGCCTGTCCGTGCAGGCTGTGCTGGATACCGAGGCTGCAGTGTACAGCGGTCAGGAGGCCATTGATGCCGGACTGGCTGATGAACTTGTCAACAGCACCGATGCGATCACCGTTATGCGTGATGCACTGGATGCACGTAAATCCGTCTCTCAGGAGGGCGAATGACCAAAGAGACTCAATCAACAACTGTTTCAGCCACTGCTTCGCAGGCTGACGTTACTGGCGTGGTGCCAGCGACGGAGGGCGAAAACGCCAGCGCGGCGCAGCCGGACGTGAACGCGCAGATCACCGCTGCGGTTGCGGCAGAAAACAGCCGCATTATGGGGATCCTCAACTGTGAGGAGGCTCACGGACGCGAAGAACAGGCCCGCGTGCTGGCAGAAACCCCGGTATGACCGTGGAAACGGCCCGCCGCATTCTGGCCGCAGCACCACAGAGTGCACAGGCGCGCAGTGATACTGCGCTGGATCGTCTGATGCAGGGGCACCGGCACCGCTGGCTGCAGGTAACCGGCATCTGATGCCGTTAACGATTTGCTGAACACACCAGTGTAAGGGATGTTTATGACGAGCAAAGAAACCTTTACCCATTACCAGCCGCTGGGCAACAGTGACCCGGCTCATACCGCAACCGCGCCCGGCGGATTGAGTGCGAAAGCGTCTGCAATGACCCCGCTGATGCTGGACACCGCCACCCGTAAGCTGGTTGCGTGGGATGGCACCACCGACGG"}, {"name": "contig_2", "length": 720, "sequence": "CCATGGTGTAATCACCAATATTTTTCATTTTATCAACGGGTTTAGTTGATTAGTTGTAGTACCTGTACCGCTCAGATAAGTAGCTGTCCAGTTAGTCATTCTTGTTAGGTTAAATCCTATCAGTTTTAAGATTGCTGATTGAGGATCTTGAGTATTAGATGCCCGTATTCACTGGCTGAGGTGGCTGTTCCCAGTGCAGGTGTATATGGTGAGTTTTGCAACTGTGCACGGTAAGCTCCTTTTACTTCCTTCAGAATTCAGTATCCCTGCTTCGCCCTGCGATGAAACTCCACTCACAGTGGGGCACGGTCGGCCAGTTCTGCCAGTCGCTGGTTGGCAGTGGCAAAGGTCTGGTACCGAGCCCCGAGGCAACCCAGCCGTAGGTGGTCAGGTAGGATTTCAGCTGCTCCTGCGCTCAGTTTCTGCGTTATCTGTTGGCAACGCCTTCTGCACCGTTTCTTCATACCTGTTGGCAGCCTTCTGAATACGGCTTTCAATATCCGGCAGGTTGCCGTTACCCGTGTCGCGTCGGGTCCGGTACGCTGACACAAATTCCTGTGCTGCGCTGTCCGGTCACGGAGCATGGTATCCATGGCGGAGCGTTGTGCCGTCAGGACACCCTGATACTCCGTTTCAATGAAGGGATTGAAAAAATAGTCCAGTGCGGACTGGTTGTTGCTGCCATTCCTTTCACGGTGAGACTCACACTCCCGCAGGTGG"}]}, {"name": "assembly_infos", "file_path": "tests/data/dummy/flye/assembly_infos.tsv", "hid": "12345", "galaxy_id": null, "content": [{"#seq_name": "contig_2", "length": 4031962, "cov.": 189, "circ.": "N", "repeat": "N", "mult.": 17, "alt_group": "*", "graph_path": "-4,-1,2"}, {"#seq_name": "contig_3", "length": 791086, "cov.": 155, "circ.": "N", "repeat": "N", "mult.": 15, "alt_group": "*", "graph_path": "-4,3"}, {"#seq_name": "contig_6", "length": 317090, "cov.": 147, "circ.": "N", "repeat": "N", "mult.": 16, "alt_group": "*", "graph_path": "4,6,1,4"}, {"#seq_name": "contig_5", "length": 220050, "cov.": 151, "circ.": "N", "repeat": "N", "mult.": 15, "alt_group": "*", "graph_path": "4,5"}, {"#seq_name": "contig_7", "length": 155068, "cov.": 311, "circ.": "Y", "repeat": "Y", "mult.": 28, "alt_group": "*", "graph_path": "7"}, {"#seq_name": "contig_4", "length": 10645, "cov.": 254, "circ.": "N", "repeat": "Y", "mult.": 18, "alt_group": "*", "graph_path": "4"}]}, {"name": "assembly_graph", "file_path": "tests/data/dummy/flye/assembly.gfa", "hid": "12345", "galaxy_id": null, "content": []}], "tool_has_database": false}]\n\\ No newline at end of file\n' |
| b |
| diff -r 6ff67d2860e1 -r def7a82d23e1 test-data/summarize/polypolish_output.json --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/summarize/polypolish_output.json Wed Jul 03 12:07:36 2024 +0000 |
| [ |
| b'@@ -0,0 +1,1 @@\n+[{"analysis_software_version": "0.5.0", "reference_database_version": null, "analysis_software_name": "polypolish", "results": [{"name": "polypolish_report", "file_path": "tests/data/dummy/polypolish/polished_assembly.fasta", "hid": "12345", "galaxy_id": null, "content": [{"name": "contig_6_polypolish", "length": 320811, "sequence": "ATAACCCGGATATTTTTGATCTTACCGAAGCGCAGCAACTGACTGCTGAAGAGCAGGTCGAAAAATGGGTGGATGGCAGGAAAAAAATACTGTGGGACAGCAAAAAGCGACGCAATGAGGCGCTCGACTGCTTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGATCTCAGTGCACTGCTGGCGAGCCTGCAGGAAGAGGATGGTGCAGCAACCAACAAGAAAACACTGGCAGAATACGCCCGTGCCTTATCCGGAGAGGATGAATGACGCGACAGGAAGAACTTGCCGCTGCCCGTGCGGCACTGCATGACCTGATGACAGGAAAACGGGTGGCAACGGTACAGAAAGACGGACGGCGAGTGGAGTTTACGACCACTTCCGTGTCTGACCTGAAAAATACATTGCTGAGCTGGAAGTGCAGACCGGCATGACACAGCGACGCAGGGGACCAGCAGGATTTTATGTATGAAAATGTCCACCATTCCCACCCTTCTGGGGCCGGACGGCATGACATCGCTGCGTGAATATGCCGGTTATCACGGCGGTGGCAGCGGATTTGGTGGGCAGTTGCGGGCGTGGAACCCACCGGGTGAAAGTGTGGATGCAGCCCTGCTGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTGGTACGCAATAACGGCTATGCCGCCAACGCCATCCAGTTGCATCAGGATCATATCGTCGGGTCTTTTTTCCGGCTCAGTCATCGCCCAAGCTGGCGCTATCTGGGCATCGGGGAGGAAGAAGCCCGTGCCTTTTCCCGCGAGGTTGAAGCGGCATGGAAAGAGTTTGCCGAAGATGACTGTTGCTGCATTGACGTTGAGCGAAAACGCACGTTTACCATGATGATTCGGGAAGGTGTGGCCATGCACGCCTTTAACGGTGAACTGTTCGTTCAGGCCACCTGGGATACCCGTCCCTCGCGACTGTTCCGGACACAGTTCCGGATGGTCAGCCCGAAGCGCATCAGCAACCCGAACAATACCGGCGACAGCCGGAACTGCCGTGCCGGTGTGCAGATTAATGACAGCGGTGCGGCGCTGGGATATTACGTCAGCGAGGACGGGTATCCTGGCTGGATGCCGCAGAAATGGACATGGATACCCCGTGAGTTACCCGGCGGCGCGCCTCGTTCATTCACGTTTTGAACCCGTGGAGGACGGGCAGACCCGCGGTGCAAATGTGTTTTACAGCGTGATGGAGCAGATGAAGATGCTCGACACGCTGCAGAACACGCAGCTGCAGAGCGCCATTGTGAAGGCGATGTATGCCGCCACCATTGAAAGTGAGCTGGATACGCAGTCAGCGATGGATTTTATTCTGGGCGCGAACAGTCAGGAGCAGCGGGAAAGGCTGACGGGCTGGATTGGTGAAATTGCCGCGTATTACGCCGCAGCACCGGTCCGTCTGGGAGGCGCAAAAGTGCCGCACCTGATGCCGGGGACTCACTGAACCTGCAGACGGCTCAGGACACGGATAACGGCTACTCCGTGTTTGAGCAGTCACTGCTGCGGTATATCGCTGCCGGGCTGGGTGTCTCGTATGAGCAGCTTTCCGGAATTACGCCCAGATGAGCTACTCCACGGCACGGGCCAGTGCGAACGAGTCGTGGGCGTACTTTATGGGGCGGCGAAAATTCGTCGCATCCCGTCAGGCGAGCCAGATGTTTCTGTGCTGGCTGGAAGAGGCCATCGTTCGCCGCGTGGTGACGTTACCTTCAAAAGCGCGCTTCAGCTTTCAGGAAGCCCGCAGTGCTGGGGGAACTGCGACTGGATAGGCTCCGGTCGTATGGCCATCGATGGTCTGAAAGAAGTTCAGGAAGCGGTGATGCTGATAGAAGCCGGACTGAGCACCTACGAGAAAGAGTGCGCGAAACGCGGTGACGACTATCAGGAAATTTTTGCCCAGCAGGTCCGTGAAACGATGGAGCGCCGCGCAGCTGGTCTTAAACCGCCCGCCTGGGCGGCTGCGGCATTTGAATCCGGGCTGCGACAATCAACAGAGGAGGAGAAGAGTGACAGCAGAGCTGCGTAATCTCCCGCATATTGCCAGCATGGCTTTTAATGAGCCGCTGATGCTTGAACCCGCCTATGCGCGGGTTTCTTTGTGCGCTTGCAGGCCAGCTTGGGATCAGCCGCCTGACGGATGCAGTATCCGGCGACAGCCTGACTGCCGGAGAGGCACCCGCGGCGCTGGCGTTATCCGGTGATGATGACGGACCACGACAGGCCCGGAGTTATCAGGTCATGAACGGCATCGCCGTGCTGCCGGTGTCCGGTACGCTGGTCAGCCGGACGCGGGCGCTGCAGCCGTATTCGGGAATGACCGGTTACAACGGCATTATCGCCCGTCTGCAACAGGCTGCCAGCGATCCGATGGTGGACGGCATTCTGCTCGATATGGACACACCGGGCGGGATGGTGGCGGGAGCATTTGACTGTGCTGACATCATCGCCCGTGTGCGAGACATAAAACCGGTATGGGCGCTGGCCAACGACATGAACTGCAGTGCAGGTCAGCTGCTTGCCAGCGCCGCCTCCCGGCGTCTGGTCACGCAGACCGCCCGGACAGGCTCCATCGGCGTCATGATGGCTCACAGTAATTACGGTGCTGCCTGGAGAAACAGGGCGTGGAAATCACGCTGATTTACAGCGGCAGCCATAAGGTGGATGGCAACCCTACAGCCATCTACCGGGTGATGTCCGGGAAACACTGCAGTCCCGGATGGATGCAACCCGCCGGATGTTTGCGCAGAAGGTGTCGGCATATACCGGCCTGTCCGTGCAGGCTGTGCTGGATACCGAGGCTGCAGTGTACAGCGGTCAGGAGGCCATTGATGCCGGACTGGCTGATGAACTTGTCAACAGCACCGATGCGATCACCGTTATGCGTGATGCACTGGATGCACGTAAATCCCGTCTCTCAGGAGGGCGAATGACCAAAGAGACTCAATCAACAACTGTTTCAGCCACTGCTTCGCAGGCTGACGTTACTGGCGTGGTGCCAGCGACGGAGGGCGAAAACGCCAGCGCGGCGCAGCCGGACGTGAACGCGCAGATCACCGCTGCGGTTGCGGCAGAAAACAGCCGCATTATGGGGATCCTCAACTGTGAGGAGGCTCACGGACGCGAAGAACAGGCCCGCGTGCTGGCAGAAACCCCGGTATGACCGTGGAAACGGCCCGCCGCATTCTGGCCGCAGCACCACAGAGTGCACAGGCGCGCAGTGATACTGCGCTGGATCGTCTGATGCAGGGGCACCGGCACCGCTGGCTGCAGGTAACCCGGCATCTGATGCCGTTAACGATTTGCTGAACACACCAGTGTAAGGGATGTTTATGACGAGCAAAGAAACCTTTACCCATTACCAGCCGCTGGGCAACAGTGACCCGGCTCATACCGCAACCGCGCCCGGCGGATTGAGTGCGAAAGCGTCTGCAATGACCCCGCTGATGCTGGACACCGCCACCCGTAAGCTGGTTGCGTGGGATGGCACCACCGACGGTGCTGCCGTTGGCATTCTTGCGGTTGCTGCTGACCAGACCAGCACCACGCTGACGTTCTACAAGTCCGGCACGTTCCGTTATGAGGATGTGCTC'..b'TTCCTGTAGGCTAATCACTGTGTCTGGGTAAACAACAGATATCTGGTGGCGATATGCAGGAACGTATTGATTATCATATTGAGAAATATCAGTTCAGGGCGAGGAATGAGTCTCCACGACTGATGCGTCAGTGGGCTTATGTCATGCGTGAATGCCGGGAGACCAGGGCTGGAGCCAGGGAGCGACTGCGGACAGCATTACTGAATGTTGATTATGTGACCAGTTTTGAGCTGCCGTTTCGTCTGCTGTTAACCCGGACACCGCAGATGATTGACACTCTGCGTCGGGAATGCCTGCTCAGCCAGAAAAAAGCCCTGTTCAACGGGCGGCAGCGGGGATGTGTATACAGTCTGCAGAATGACTTATCCGGTGTGCCGGATTGTTTCAGCTACAGTCTTGCGACGCGAATACGGCGGATGGACTGCTATGGCATGACGACGCGTTGTTTTACTGATATCGCCGGGCAGGTTAAAGCCCCGACGGCACGGCTGAAACTGGCGCTGGAAAGCGGGTTGCTGGTAACGGCACTGGATGGCCTGTTCTGGCTGGGAACTCAGCGAATTGCAGCTGATGTGCAGAGACTGCGTCAGTCAGGTATGGTTATAGTCACCCGGGAAGTTGAGGTATCAGACTCCCTGACCGGAACCACCAGACTGGTTTCTGCTTACACACTTTAAAGCACAGGAGGAATCTTTGTTACCGTATTCGCACTGATTCTGAAATTTACCATTGTTTACCGGGACAGATTACAGACAGGATATTTTATGCGAGATAAATCGAAGTATTAACCGAGCGCAGAAAACAGATTTGGTCTGATTCTTTATATTATACTATTATCAGTTATTTATATATTGATAACAAGACTTAATCTCACAACCACATATTATTCGCTGTATTCATCTCTGGATGAGAATTCACAGGTGACGGAGTATTTTATAATATCCATAGCCACCTTTCTTTTCTGGCGGCTTTATGTTTGTTCTTCATTTATTCTTTCTTTAAACGGAAAAGAGTTGTCGGGAAATTACTTCTGTGCATTTATATTCTTATATATCACACTATGCTATCACTTTTGTTTATTGTCTTTATGTTGTCGGTGCTGAGTGTATGGCAACCGGAGGTAGTGCATCCAATTAGTAGAACATGTGTTTTTCGATAAACGCTCCGATCACTTTTTCGTGGATCTCAACTGAGCGTGAGAAGCAGATTGTTTTACGAGCCAACCGCTTAATGCGGGTGCGTAGCGTCAGATTATTACGCTCAATGCGTTGGGTGAATATTTTGCCGGTCAGATGCTTATTCTTCGGCACCTCCCGGCCATAGCTGCCCCAGTCATCGCTGGTCAGCATGCCGATGTTGAAGGTGTAAGCAGTGCCAGTAGCTCCCGGCACGTTTGATCGGTTCGGGGACCAAAGTGTAGGCCAGTACACCGCCTGTTTTGGTGTTGTACGCGTACCAGAGCCAGTGTTGCCGGGCTTTACTGCCAACGTAGCTCCATTGCTCATCAAGCTCGCAGATAAGCGCCACATCAGCATGGGCAACAGGCGAAGACGTTATTCGCTTTGGCGCGAGTTTTTAAAGTCCGGATGACGGTGTTAATACCAATTTTCAGTGTCCTGGCGGTATCGCGAACCCCGGCACCATTAAAGGCCATTTCAGTTATCAGCTCTTTCATACCCGGCTTACGTGCTTGATAAGTATAAGTGAGCTGAAACACACGGTGGCAGTCACGGCAGCGAAATCTGTCACGGCCTTTAGGGTTCTGACCATGGCGGTAAACCTGAGCTGACTGACAACGGGGACAATGAATATTAACGCTGGCCATGAGATAACCTCAAAAGCCCGTATTATACATCAGATTCAACTAATTAGAGGCATCACCCATGAGCAATTGTTTTTGCAGTGCTCAATGATATTAAATTATTGATGATACTATTGTGTTCTTGGCGAGAATCTTGTTGAAGTAATTGCTGAGATCATTCACAGTGTTTATATCGTTGAACTCAAGAAACTCAGAAGGAAGCAGGCGTTTGATTGCTCCACGTATTCCCCCGGACGATCGTTGATGTGTTTGAGTAAGTTTTTTTAGCGAGACGCCCTCCGCTATGGATACGAGAAGACGCTGTAACTCTTCAGTATTCCATGGAGTACCATGTCGTGCTGGAAAATTGCTGCGGATTCAGACATGATTTTATCTTTATGTTTTCTAGGTACTGCCTTGAGTGTGTGGATATGATAATTATTTATAATGATATTGTTATCTTTATAGATAACTGATATGCAGAATTGTATTGATTTTGTCTACAGTGGGCAAGACAGTGCTAAGAATTTGTGGGGAAAAATAGAGACTCCATGCGGCGTCCTGAGATAGACGGCAGACAGGCATTCTGCCTGAAAAGAAAAAGCCGGTTCAGAGAAAACCGGCTGACGGATTACCGTCTAACAGTTGGTCGCTACCTTAAAATACTTCTGCAACAGGCACACCGGCAACTTTTTCCCACTCTTTAACCCGATACCGGATCATCTGCGGGAAACGTTCCTTGTACTCATATCCACGTGCAGCCATGGTGTGCATGGTGTTGGCCAGTGTCCTTGATGAGATGCCGGAGATTTCAAGAGGGATCATCGGCAGACTCACATAGGTGGTGTGGATTTCCAGCTTGCCGTCTTCAGCAACTGTTCGGGTGAAGTTGTGAATATCCAGACCAATCACATCCATGACATTGTTTGGGTAAATGCGCACATACAGCATGGTGCCGTTTTTAATGTCGATCCCGAAATAACAACTCTTCGAGAATGACAGTTGCTCGTAATCGCTAGTCGGCGCAAAGGGACTGCTTTCTTTTATCTTCTTAACAACCTGTAGGATTTTCTTTGCCTTAGTTCTCAGATATAGCCATAGTGAAGGAATTATTAATAGAAACCAACTGCCACAAGTATATAGATATGCTTGAATATCTGTTCCTATATATGGTTCTGTAAGCATCATGCCGGTAAAGCCTAGAGAACATAACAATAAAAAAGGAATGCCAAATATAAAGTAAGTGTTGCGAATAAGATAATAATATCCCCACCAGGAAGGATATCTGTTTTTTGTTGTATTCATAATGAACCCCCATATTCACCTGAATGTATTTTAATCTCTTCAGGTGAATATGGCAATACTGTTTTGTACTCTATTGTTTTATTCCGTCCTTATCATCTCCATTAATATTTTTCAGTTTTTCTTCACGAACGCCAGGTGTTCTGCGTATATTGGTGTTTCCGCCGGCAATAATATCTTTGACGGAAGAAACCATATTTCCCAGCATATTAACGCCGTCACGTCCACCCAGAAAATTAATCACATGGTCTGGCAGATAAGCCTGAAGTGCAAAAACGCCCGCAACCAGTGTGGTACAGGCGCGGGCATAAATCATCAAAAATCCCGCCATGCTGAACACCCCCGTCACAGAATTTATCTGGACATTCATTAGTGCTGCAGCGTACAGAGCATTCAGTATGGTGCCGCCAGCCACGATGGCGACCGATGCAAAAAAGAACCCGAACACCATCAGCAGTGGCCTGATCATGCTGTCTATCAGGTAGATGTAACCGTAAGCGGCCCGACTTCCTCTGTCCTGACTTGTTCCCAGGTGGGTTGCGGCCCACAGGGGGCCGGCGGCGCATCCAATCAGTACACTGACTATCCAGTTACCGATGCCGGTCATCCAGAAGATAAACGGAATAAACGGCAGGTAAATGGATAACGAAAAACCGGCACAGAACAGCAAAAACAGCAGGAAGTAGAGCGGTGGTGCAGCTGCTTCCAGAAAAGCCTTTGCGGCATCAGATAAGCCGCTAACAGCATTGACCAGTCGACCAAAATGGAGTTGCTGCCGGCAGTGGAAAGCACCTGACGGTGGTATAACCCGCCCAGATGGTTTCGGTTGTGA"}]}], "tool_has_database": false}]\n\\ No newline at end of file\n' |