Repository 'hifiasm'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm

Changeset 18:df25d4fb79b7 (2024-01-17)
Previous changeset 17:0ee0c3089254 (2023-11-06) Next changeset 19:284a1cb82b61 (2024-07-11)
Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hifiasm commit 59abcbabcdbfb8b5bdb0abcd5d3f24fee19abd6f
modified:
hifiasm.xml
b
diff -r 0ee0c3089254 -r df25d4fb79b7 hifiasm.xml
--- a/hifiasm.xml Mon Nov 06 20:13:05 2023 +0000
+++ b/hifiasm.xml Wed Jan 17 21:31:58 2024 +0000
b
@@ -2,7 +2,7 @@
     <description>haplotype-resolved de novo assembler for PacBio Hifi reads</description>
     <macros>
         <token name="@TOOL_VERSION@">0.19.8</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
         <token name="@FORMATS@">fasta,fasta.gz,fastq,fastq.gz</token>
         <xml name="reads">
             <param name="reads" type="data" format="@FORMATS@" multiple="true" label="Input reads" />
@@ -270,7 +270,7 @@
             </param>
             <when value="blank" />
             <when value="set">
-                <param argument="--ul" type="data" format="fastq,fastq.gz,fasta,fasta.gz" multiple="true" label="Ultra-long (>10kb) reads" />
+                <param argument="--ul" type="data" format="fastq,fastq.gz,fasta,fasta.gz" multiple="true" label="Ultra-long (>100kb) reads" />
                 <param argument="--ul-rate" type="float" value="0.2" optional="true" label="error rate of ultra-long reads (default 0.2)" />
                 <param argument="--ul-tip" type="integer" value="6" optional="true" label="remove tip unitigs composed of less than (INT) reads for the UL assembly (default 6)" />
             </when>