| Previous changeset 8:e6cbe3190642 (2020-06-12) Next changeset 10:7f13dc906cb9 (2021-10-11) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 041a4d1618298f540e3917f00781e09ec7d71b75" |
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modified:
alignments-to-links.xml binlinks.xml bundlelinks.xml circos.xml gc_skew.xml resample.xml scatter-from-wiggle.xml stack-histogram.xml tableviewer.xml text-from-interval.xml tiles-from-interval.xml |
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| diff -r e6cbe3190642 -r df7356989ac1 alignments-to-links.xml --- a/alignments-to-links.xml Fri Jun 12 10:39:58 2020 -0400 +++ b/alignments-to-links.xml Mon Nov 23 10:56:29 2020 +0000 |
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| @@ -6,6 +6,13 @@ </macros> <expand macro="requirements"> </expand> + <edam_topics> + <edam_topic>topic_0797</edam_topic> + <edam_topic>topic_0092</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_1812</edam_operation> + </edam_operations> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/alignments-to-links.py' '$input' '$input.ext' > '$output' ]]></command> |
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| diff -r e6cbe3190642 -r df7356989ac1 binlinks.xml --- a/binlinks.xml Fri Jun 12 10:39:58 2020 -0400 +++ b/binlinks.xml Mon Nov 23 10:56:29 2020 +0000 |
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| @@ -4,6 +4,13 @@ <macros> <import>macros.xml</import> </macros> + <edam_topics> + <edam_topic>topic_0797</edam_topic> + <edam_topic>topic_0092</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_3436</edam_operation> + </edam_operations> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ binlinks |
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| diff -r e6cbe3190642 -r df7356989ac1 bundlelinks.xml --- a/bundlelinks.xml Fri Jun 12 10:39:58 2020 -0400 +++ b/bundlelinks.xml Mon Nov 23 10:56:29 2020 +0000 |
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| @@ -5,6 +5,13 @@ <import>macros.xml</import> </macros> <expand macro="requirements" /> + <edam_topics> + <edam_topic>topic_0797</edam_topic> + <edam_topic>topic_0092</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_3436</edam_operation> + </edam_operations> <command detect_errors="exit_code"><![CDATA[ bundlelinks #if $max_gap: |
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| diff -r e6cbe3190642 -r df7356989ac1 circos.xml --- a/circos.xml Fri Jun 12 10:39:58 2020 -0400 +++ b/circos.xml Mon Nov 23 10:56:29 2020 +0000 |
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| @@ -12,6 +12,13 @@ <import>macros_tests.xml</import> </macros> <expand macro="requirements"/> + <edam_topics> + <edam_topic>topic_0797</edam_topic> + <edam_topic>topic_0092</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0337</edam_operation> + </edam_operations> <version_command>circos --version</version_command> <stdio> <!-- Anything other than zero is an error --> |
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| diff -r e6cbe3190642 -r df7356989ac1 gc_skew.xml --- a/gc_skew.xml Fri Jun 12 10:39:58 2020 -0400 +++ b/gc_skew.xml Mon Nov 23 10:56:29 2020 +0000 |
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| @@ -6,6 +6,13 @@ </macros> <expand macro="requirements"> </expand> + <edam_topics> + <edam_topic>topic_0797</edam_topic> + <edam_topic>topic_0092</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0262</edam_operation> + </edam_operations> <command detect_errors="exit_code"><![CDATA[ ln -s -f #if $reference_genome.reference_genome_source == "history" |
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| diff -r e6cbe3190642 -r df7356989ac1 resample.xml --- a/resample.xml Fri Jun 12 10:39:58 2020 -0400 +++ b/resample.xml Mon Nov 23 10:56:29 2020 +0000 |
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| @@ -5,6 +5,13 @@ <import>macros.xml</import> </macros> <expand macro="requirements" /> + <edam_topics> + <edam_topic>topic_0797</edam_topic> + <edam_topic>topic_0092</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_3436</edam_operation> + </edam_operations> <command detect_errors="exit_code"><![CDATA[ resample -bin '$bins' |
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| diff -r e6cbe3190642 -r df7356989ac1 scatter-from-wiggle.xml --- a/scatter-from-wiggle.xml Fri Jun 12 10:39:58 2020 -0400 +++ b/scatter-from-wiggle.xml Mon Nov 23 10:56:29 2020 +0000 |
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| @@ -6,6 +6,13 @@ </macros> <expand macro="requirements"> </expand> + <edam_topics> + <edam_topic>topic_0797</edam_topic> + <edam_topic>topic_0092</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_3434</edam_operation> + </edam_operations> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/scatter-from-wiggle.py' '$input' > '$output' ]]></command> |
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| diff -r e6cbe3190642 -r df7356989ac1 stack-histogram.xml --- a/stack-histogram.xml Fri Jun 12 10:39:58 2020 -0400 +++ b/stack-histogram.xml Mon Nov 23 10:56:29 2020 +0000 |
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| @@ -6,6 +6,13 @@ </macros> <expand macro="requirements"> </expand> + <edam_topics> + <edam_topic>topic_0797</edam_topic> + <edam_topic>topic_0092</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0335</edam_operation> + </edam_operations> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/stack-histogram.py' |
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| diff -r e6cbe3190642 -r df7356989ac1 tableviewer.xml --- a/tableviewer.xml Fri Jun 12 10:39:58 2020 -0400 +++ b/tableviewer.xml Mon Nov 23 10:56:29 2020 +0000 |
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| @@ -4,6 +4,13 @@ <macros> <import>macros.xml</import> </macros> + <edam_topics> + <edam_topic>topic_0797</edam_topic> + <edam_topic>topic_0092</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0337</edam_operation> + </edam_operations> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ mkdir -p circos/data/ && |
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| diff -r e6cbe3190642 -r df7356989ac1 text-from-interval.xml --- a/text-from-interval.xml Fri Jun 12 10:39:58 2020 -0400 +++ b/text-from-interval.xml Mon Nov 23 10:56:29 2020 +0000 |
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| @@ -6,6 +6,13 @@ </macros> <expand macro="requirements"> </expand> + <edam_topics> + <edam_topic>topic_0797</edam_topic> + <edam_topic>topic_0092</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_3434</edam_operation> + </edam_operations> <command detect_errors="exit_code"><![CDATA[ python #if $ref.ref_source == 'gff3': |
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| diff -r e6cbe3190642 -r df7356989ac1 tiles-from-interval.xml --- a/tiles-from-interval.xml Fri Jun 12 10:39:58 2020 -0400 +++ b/tiles-from-interval.xml Mon Nov 23 10:56:29 2020 +0000 |
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| @@ -6,6 +6,13 @@ </macros> <expand macro="requirements"> </expand> + <edam_topics> + <edam_topic>topic_0797</edam_topic> + <edam_topic>topic_0092</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_3434</edam_operation> + </edam_operations> <command detect_errors="exit_code"><![CDATA[ python #if $ref.ref_source == 'gff3': |