| Previous changeset 8:e0f4a651c6b9 (2018-04-20) Next changeset 10:ce0f144f4835 (2018-08-05) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 31d721c19f5681dfe542dd23185c06c8f29f1945 |
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modified:
generate_test_data.sh multiqc.xml test-data/aligner_soft_report.html test-data/aligner_soft_stats.tabular test-data/bowtie2_stats.tabular test-data/hisat2_stats.tabular test-data/kallisto_stats.tabular test-data/star_stats.tabular test-data/tophat_stats.tabular |
| b |
| diff -r e0f4a651c6b9 -r df99138d2776 generate_test_data.sh --- a/generate_test_data.sh Fri Apr 20 01:06:25 2018 -0400 +++ b/generate_test_data.sh Wed Apr 25 07:59:52 2018 -0400 |
| b |
| @@ -46,8 +46,9 @@ cp 'test-data/hisat2_2.txt' 'multiqc_WDir/hisat2/hisat2_2.txt' mkdir -p 'multiqc_WDir/hicexplorer' -cp 'test-data/hicexplorer1.log' 'multiqc_WDir/hicexplorer/' -cp 'test-data/hicexplorer2.log' 'multiqc_WDir/hicexplorer/' +cp 'test-data/hicexplorer1.log' 'multiqc_WDir/hicexplorer/hicexplorer1' +cp 'test-data/hicexplorer1.log' 'multiqc_WDir/hicexplorer/hicexplorer1_1' +cp 'test-data/hicexplorer2.log' 'multiqc_WDir/hicexplorer/hicexplorer2' mkdir -p 'multiqc_WDir/kallisto' cp 'test-data/kallisto_1.txt' 'multiqc_WDir/kallisto/kallisto_1.txt' |
| b |
| diff -r e0f4a651c6b9 -r df99138d2776 multiqc.xml --- a/multiqc.xml Fri Apr 20 01:06:25 2018 -0400 +++ b/multiqc.xml Wed Apr 25 07:59:52 2018 -0400 |
| [ |
| @@ -8,6 +8,10 @@ ]]></token> <token name="@CHECK_LN_FILE@"> <![CDATA[ +#if $file_path in $file_paths + #set $file_path += '_' + str($file_paths.count($file_path)) +#end if +#set $file_paths += [$file_path] grep -q "$pattern" $file || die "Module '${repeat.software_cond.software}: '$pattern' not found in the file '$identifier'" && ln -s '$file' '$file_path' && ]]></token> @@ -23,6 +27,7 @@ ]]></token> <token name="@LN_FILES@"> <![CDATA[ +#set file_paths = [] #for $file in $repeat.software_cond.input @ESCAPE_IDENTIFIER@ #set file_path = os.path.join($software_dir, str($identifier)) @@ -31,6 +36,7 @@ ]]></token> <token name="@LN_2_FILES@"> <![CDATA[ +#set file_paths = [] @CREATE_REPEAT_DIR_1@ #for $file in $repeat2.input #set identifier = re.sub('[^\s\w\-]', '_', str($file.element_identifier)) @@ -40,6 +46,7 @@ ]]></token> <token name="@LN_3_FILES@"> <![CDATA[ +#set file_paths = [] #for $file in $repeat2.type.input #set identifier = re.sub('[^\s\w\-]', '_', str($file.element_identifier)) #set file_path = os.path.join($repeat_dir, str($identifier)) @@ -868,7 +875,7 @@ <repeat name="results"> <conditional name="software_cond"> <param name="software" value="hicexplorer" /> - <param name="input" value="hicexplorer1.log,hicexplorer2.log" /> + <param name="input" value="hicexplorer1.log,hicexplorer1.log,hicexplorer2.log" /> </conditional> </repeat> <repeat name="results"> @@ -910,7 +917,7 @@ <has_text text="star_alignment_plot" /> <has_text text="tophat_alignment" /> <has_text text="hicexplorer" /> - + <has_text text="hicexplorer1_log_1" /> </assert_contents> </output> <output_collection name="stats" type="list"> |
| b |
| diff -r e0f4a651c6b9 -r df99138d2776 test-data/aligner_soft_report.html --- a/test-data/aligner_soft_report.html Fri Apr 20 01:06:25 2018 -0400 +++ b/test-data/aligner_soft_report.html Wed Apr 25 07:59:52 2018 -0400 |
| b |
| b'@@ -24,7 +24,7 @@\n \n <!-- JSON plot data -->\n <script type="text/javascript">\n-mqc_compressed_plotdata = \'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'..b'a-coloured mqc-generalstats-Pairs_used "></td><td class="data-coloured mqc-generalstats-Mapped "></td><td class="data-coloured mqc-generalstats-Min_rest_site_distance "></td><td class="data-coloured mqc-generalstats-Max_rest_site_distance "></td><td class="data-coloured mqc-generalstats-fragment_length "></td><td class="data-coloured mqc-generalstats-pseudoaligned_reads "></td><td class="data-coloured mqc-generalstats-uniquely_mapped_percent "></td><td class="data-coloured mqc-generalstats-uniquely_mapped "></td><td class="data-coloured mqc-generalstats-overall_alignment_rate "><div class="wrapper"><span class="bar" style="width:96.15%; background-color:#b3cac0;"></span><span class="val">96.2%</span></div></td><td class="data-coloured mqc-generalstats-overall_aligned_percent "></td><td class="data-coloured mqc-generalstats-aligned_not_multimapped_discordant "></td><td class="data-coloured mqc-generalstats-percent_trimmed "></td></tr><tr><th class="rowheader" data-original-sn="star_log">star_log</th><td class="data-coloured mqc-generalstats-aligned_reads hidden"></td><td class="data-coloured mqc-generalstats-percent_aligned "></td><td class="data-coloured mqc-generalstats-Pairs_considered "></td><td class="data-coloured mqc-generalstats-Pairs_used "></td><td class="data-coloured mqc-generalstats-Mapped "></td><td class="data-coloured mqc-generalstats-Min_rest_site_distance "></td><td class="data-coloured mqc-generalstats-Max_rest_site_distance "></td><td class="data-coloured mqc-generalstats-fragment_length "></td><td class="data-coloured mqc-generalstats-pseudoaligned_reads "></td><td class="data-coloured mqc-generalstats-uniquely_mapped_percent "><div class="wrapper"><span class="bar" style="width:89.0%; background-color:#b3d0c2;"></span><span class="val">89.0%</span></div></td><td class="data-coloured mqc-generalstats-uniquely_mapped "><div class="wrapper"><span class="bar" style="width:0.00015013262277306088%; background-color:#f7f4f9;"></span><span class="val">0.0</span></div></td><td class="data-coloured mqc-generalstats-overall_alignment_rate "></td><td class="data-coloured mqc-generalstats-overall_aligned_percent "></td><td class="data-coloured mqc-generalstats-aligned_not_multimapped_discordant "></td><td class="data-coloured mqc-generalstats-percent_trimmed "></td></tr><tr><th class="rowheader" data-original-sn="tophat_align">tophat_align</th><td class="data-coloured mqc-generalstats-aligned_reads hidden"></td><td class="data-coloured mqc-generalstats-percent_aligned "></td><td class="data-coloured mqc-generalstats-Pairs_considered "></td><td class="data-coloured mqc-generalstats-Pairs_used "></td><td class="data-coloured mqc-generalstats-Mapped "></td><td class="data-coloured mqc-generalstats-Min_rest_site_distance "></td><td class="data-coloured mqc-generalstats-Max_rest_site_distance "></td><td class="data-coloured mqc-generalstats-fragment_length "></td><td class="data-coloured mqc-generalstats-pseudoaligned_reads "></td><td class="data-coloured mqc-generalstats-uniquely_mapped_percent "></td><td class="data-coloured mqc-generalstats-uniquely_mapped "></td><td class="data-coloured mqc-generalstats-overall_alignment_rate "></td><td class="data-coloured mqc-generalstats-overall_aligned_percent "><div class="wrapper"><span class="bar" style="width:99.5%; background-color:#b3c8bf;"></span><span class="val">99.5%</span></div></td><td class="data-coloured mqc-generalstats-aligned_not_multimapped_discordant "><div class="wrapper"><span class="bar" style="width:0.5191096899305881%; background-color:#fcfbfd;"></span><span class="val">0.3</span></div></td><td class="data-coloured mqc-generalstats-percent_trimmed "></td></tr></tbody></table></div><div class="mqc-table-expand"><span class="glyphicon glyphicon-chevron-down" aria-hidden="true"></span></div></div>\n <!-- MultiQC Table Columns Modal -->\n <div class="modal fade" id="general_stats_table_configModal" tabindex="-1">\n <div class="modal-dialog modal-lg">\n' |
| b |
| diff -r e0f4a651c6b9 -r df99138d2776 test-data/aligner_soft_stats.tabular --- a/test-data/aligner_soft_stats.tabular Fri Apr 20 01:06:25 2018 -0400 +++ b/test-data/aligner_soft_stats.tabular Wed Apr 25 07:59:52 2018 -0400 |
| b |
| @@ -1,16 +1,17 @@ -Sample Cutadapt_mqc-generalstats-percent_trimmed Kallisto_mqc-generalstats-pseudoaligned_reads Kallisto_mqc-generalstats-fragment_length Kallisto_mqc-generalstats-percent_aligned Bismark_mqc-generalstats-aligned_reads Bismark_mqc-generalstats-percent_aligned Bowtie 2_mqc-generalstats-overall_alignment_rate HiCExplorer_mqc-generalstats-Mapped HiCExplorer_mqc-generalstats-Pairs_used HiCExplorer_mqc-generalstats-Min_rest_site_distance HiCExplorer_mqc-generalstats-Pairs_considered HiCExplorer_mqc-generalstats-Max_rest_site_distance HISAT2_mqc-generalstats-overall_alignment_rate STAR_mqc-generalstats-uniquely_mapped_percent STAR_mqc-generalstats-uniquely_mapped Tophat_mqc-generalstats-overall_aligned_percent Tophat_mqc-generalstats-aligned_not_multimapped_discordant +Sample Cutadapt_mqc-generalstats-percent_trimmed Kallisto_mqc-generalstats-percent_aligned Kallisto_mqc-generalstats-fragment_length Kallisto_mqc-generalstats-pseudoaligned_reads Bismark_mqc-generalstats-percent_aligned Bismark_mqc-generalstats-aligned_reads Bowtie 2_mqc-generalstats-overall_alignment_rate HiCExplorer_mqc-generalstats-Pairs_used HiCExplorer_mqc-generalstats-Min_rest_site_distance HiCExplorer_mqc-generalstats-Mapped HiCExplorer_mqc-generalstats-Max_rest_site_distance HiCExplorer_mqc-generalstats-Pairs_considered HISAT2_mqc-generalstats-overall_alignment_rate STAR_mqc-generalstats-uniquely_mapped STAR_mqc-generalstats-uniquely_mapped_percent Tophat_mqc-generalstats-aligned_not_multimapped_discordant Tophat_mqc-generalstats-overall_aligned_percent HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R1 5.880883098970165 -HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R1_val_1 48531088.0 167.866 83.65114569077758 +HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R1_val_1 83.65114569077758 167.866 48531088.0 HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R2 31.038195169381073 HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R1 7.7267901650356645 -HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R1_val_1 59280920.0 169.418 84.50278473550448 +HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R1_val_1 84.50278473550448 169.418 59280920.0 HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R2 32.18485266309055 -bismark_SE_report 220558.0 69.71079996207212 +bismark_SE_report 69.71079996207212 220558.0 bowtie2_1 98.33 bowtie2_2 98.31 -hicexplorer_hicexplorer1_small_test 0.08778492343698428 0.3732734564876029 303.0 99983.0 800.0 -hicexplorer_hicexplorer2_small_test_rf 0.08778492343698428 0.35940109818669175 152.0 99983.0 1500.0 +hicexplorer_hicexplorer1_1_small_test 0.3732734564876029 303.0 0.08778492343698428 800.0 99983.0 +hicexplorer_hicexplorer1_small_test 0.3732734564876029 303.0 0.08778492343698428 800.0 99983.0 +hicexplorer_hicexplorer2_small_test_rf 0.35940109818669175 152.0 0.08778492343698428 1500.0 99983.0 hisat2_1 96.15 hisat2_2 96.15 star_log 89.0 89.0 -tophat_align 99.5 307733.0 +tophat_align 307733.0 99.5 |
| b |
| diff -r e0f4a651c6b9 -r df99138d2776 test-data/bowtie2_stats.tabular --- a/test-data/bowtie2_stats.tabular Fri Apr 20 01:06:25 2018 -0400 +++ b/test-data/bowtie2_stats.tabular Wed Apr 25 07:59:52 2018 -0400 |
| b |
| @@ -1,3 +1,3 @@ -Sample unpaired_total unpaired_aligned_multi overall_alignment_rate unpaired_aligned_none total_reads unpaired_aligned_one -bowtie2_1 21040602 7389576 98.33 351563 21040602 13299463 -bowtie2_2 16199126 5837404 98.31 274008 16199126 10087714 +Sample unpaired_total total_reads unpaired_aligned_one unpaired_aligned_none overall_alignment_rate unpaired_aligned_multi +bowtie2_1 21040602 21040602 13299463 351563 98.33 7389576 +bowtie2_2 16199126 16199126 10087714 274008 98.31 5837404 |
| b |
| diff -r e0f4a651c6b9 -r df99138d2776 test-data/hisat2_stats.tabular --- a/test-data/hisat2_stats.tabular Fri Apr 20 01:06:25 2018 -0400 +++ b/test-data/hisat2_stats.tabular Wed Apr 25 07:59:52 2018 -0400 |
| b |
| @@ -1,3 +1,3 @@ -Sample unpaired_aligned_multi overall_alignment_rate unpaired_aligned_none unpaired_total unpaired_aligned_one -hisat2_1 9953 96.15 3849 99978 86176 -hisat2_2 9953 96.15 3849 99978 86176 +Sample unpaired_total overall_alignment_rate unpaired_aligned_one unpaired_aligned_none unpaired_aligned_multi +hisat2_1 99978 96.15 86176 3849 9953 +hisat2_2 99978 96.15 86176 3849 9953 |
| b |
| diff -r e0f4a651c6b9 -r df99138d2776 test-data/kallisto_stats.tabular --- a/test-data/kallisto_stats.tabular Fri Apr 20 01:06:25 2018 -0400 +++ b/test-data/kallisto_stats.tabular Wed Apr 25 07:59:52 2018 -0400 |
| b |
| @@ -1,3 +1,3 @@ -Sample pseudoaligned_reads not_pseudoaligned_reads total_reads percent_aligned fragment_length -HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R1_val_1 48531088.0 9484959.0 58016047.0 83.65114569077758 167.866 -HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R1_val_1 59280920.0 10871703.0 70152623.0 84.50278473550448 169.418 +Sample percent_aligned total_reads not_pseudoaligned_reads pseudoaligned_reads fragment_length +HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R1_val_1 83.65114569077758 58016047.0 9484959.0 48531088.0 167.866 +HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R1_val_1 84.50278473550448 70152623.0 10871703.0 59280920.0 169.418 |
| b |
| diff -r e0f4a651c6b9 -r df99138d2776 test-data/star_stats.tabular --- a/test-data/star_stats.tabular Fri Apr 20 01:06:25 2018 -0400 +++ b/test-data/star_stats.tabular Wed Apr 25 07:59:52 2018 -0400 |
| b |
| @@ -1,2 +1,2 @@ -Sample multimapped_percent insertion_rate multimapped_toomany_percent num_annotated_splices num_GTAG_splices uniquely_mapped unmapped_tooshort_percent deletion_length mismatch_rate insertion_length num_noncanonical_splices num_ATAC_splices deletion_rate multimapped_toomany total_reads num_GCAG_splices num_splices unmapped_mismatches_percent unmapped_other_percent unmapped_mismatches unmapped_tooshort multimapped unmapped_other avg_mapped_read_length uniquely_mapped_percent avg_input_read_length -star_log 1.0 0.0 0.0 0.0 47.0 89.0 10.0 0.0 1.73 0.0 0.0 0.0 0.0 0.0 100.0 0.0 47.0 0.0 0.0 0 10 1.0 0 74.8 89.0 75.0 +Sample mismatch_rate avg_input_read_length num_annotated_splices multimapped_toomany_percent num_splices uniquely_mapped uniquely_mapped_percent multimapped multimapped_toomany unmapped_tooshort multimapped_percent num_ATAC_splices unmapped_tooshort_percent total_reads unmapped_mismatches num_noncanonical_splices insertion_rate unmapped_other_percent num_GTAG_splices insertion_length deletion_length deletion_rate unmapped_other unmapped_mismatches_percent num_GCAG_splices avg_mapped_read_length +star_log 1.73 75.0 0.0 0.0 47.0 89.0 89.0 1.0 0.0 10 1.0 0.0 10.0 100.0 0 0.0 0.0 0.0 47.0 0.0 0.0 0.0 0 0.0 0.0 74.8 |
| b |
| diff -r e0f4a651c6b9 -r df99138d2776 test-data/tophat_stats.tabular --- a/test-data/tophat_stats.tabular Fri Apr 20 01:06:25 2018 -0400 +++ b/test-data/tophat_stats.tabular Wed Apr 25 07:59:52 2018 -0400 |
| b |
| @@ -1,2 +1,2 @@ -Sample aligned_not_multimapped_discordant concordant_aligned_percent unaligned_total aligned_total aligned_multimap total_reads aligned_discordant overall_aligned_percent -tophat_align 307733.0 99.0 2985.0 313405.0 5638.0 316390.0 34.0 99.5 +Sample total_reads concordant_aligned_percent unaligned_total aligned_total aligned_multimap aligned_discordant overall_aligned_percent aligned_not_multimapped_discordant +tophat_align 316390.0 99.0 2985.0 313405.0 5638.0 34.0 99.5 307733.0 |