| Previous changeset 6:5990c4dbfbaa (2016-08-06) Next changeset 8:afcea0f23a55 (2016-08-06) |
|
Commit message:
Uploaded |
|
modified:
filter_fasta.py |
| b |
| diff -r 5990c4dbfbaa -r e01b49c112b0 filter_fasta.py --- a/filter_fasta.py Sat Aug 06 17:04:57 2016 -0400 +++ b/filter_fasta.py Sat Aug 06 17:10:23 2016 -0400 |
| [ |
| @@ -79,10 +79,11 @@ if merged!="": seq.append(merged) cnt=0 - with open("output.fasta","w") as x: - for i in header: - x.write(i+'\n'+seq[cnt]+'\n') - cnt+=1 + x = open("output.fasta","w"): + for i in header: + x.write(i+'\n'+seq[cnt]+'\n') + cnt+=1 + x.close() fasta = sys.argv[1] # fasta file to filter data = sys.argv[2] # scaffold report #2 -- filename |