| Next changeset 1:ae04ef51094f (2023-01-13) |
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Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1 |
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added:
qiime2__diversity__beta_group_significance.xml test-data/.gitkeep |
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| diff -r 000000000000 -r e12bf91d8469 qiime2__diversity__beta_group_significance.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__diversity__beta_group_significance.xml Mon Aug 29 19:31:14 2022 +0000 |
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| @@ -0,0 +1,86 @@ +<?xml version='1.0' encoding='utf-8'?> +<!-- +Copyright (c) 2022, QIIME 2 development team. + +Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) +--> +<!-- +This tool was automatically generated by: + q2galaxy (version: 2022.8.1) +for: + qiime2 (version: 2022.8.1) +--> +<tool name="qiime2 diversity beta-group-significance" id="qiime2__diversity__beta_group_significance" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> + <description>Beta diversity group significance</description> + <requirements> + <container type="docker">quay.io/qiime2/core:2022.8</container> + </requirements> + <version_command>q2galaxy version diversity</version_command> + <command detect_errors="aggressive">q2galaxy run diversity beta_group_significance '$inputs'</command> + <configfiles> + <inputs name="inputs" data_style="paths"/> + </configfiles> + <inputs> + <param name="distance_matrix" type="data" format="qza" label="distance_matrix: DistanceMatrix" help="[required] Matrix of distances between pairs of samples."> + <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="DistanceMatrix"/> + </options> + <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['DistanceMatrix']</validator> + </param> + <conditional name="metadata"> + <param name="type" type="select" label="metadata: MetadataColumn[Categorical]" help="[required] Categorical sample metadata column."> + <option value="tsv" selected="true">Metadata from TSV</option> + <option value="qza">Metadata from Artifact</option> + </param> + <when value="tsv"> + <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/> + <param name="column" type="data_column" label="Column Name" data_ref="source" use_header_names="true"> + <validator type="expression" message="The first column cannot be selected (they are IDs).">value != "1"</validator> + </param> + </when> + <when value="qza"> + <param name="source" type="data" format="qza" label="Metadata Source"/> + <param name="column" type="text" label="Column Name"> + <validator type="empty_field"/> + </param> + </when> + </conditional> + <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> + <param name="method" type="select" label="method: Str % Choices('permanova', 'anosim', 'permdisp')" display="radio"> + <option value="permanova" selected="true">permanova</option> + <option value="anosim">anosim</option> + <option value="permdisp">permdisp</option> + </param> + <param name="pairwise" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="pairwise: Bool" help="[default: No] Perform pairwise tests between all pairs of groups in addition to the test across all groups. This can be very slow if there are a lot of groups in the metadata column."/> + <param name="permutations" type="integer" value="999" label="permutations: Int" help="[default: 999] The number of permutations to be run when computing p-values."/> + </section> + </inputs> + <outputs> + <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> + </outputs> + <tests/> + <help> +QIIME 2: diversity beta-group-significance +========================================== +Beta diversity group significance + + +Outputs: +-------- +:visualization.qzv: <no description> + +| + +Description: +------------ +Determine whether groups of samples are significantly different from one another using a permutation-based statistical test. + + +| + +</help> + <citations> + <citation type="doi">https://doi.org/10.1111/j.1442-9993.2001.01070.pp.x</citation> + <citation type="doi">10.1038/s41587-019-0209-9</citation> + </citations> +</tool> |