Repository 'extract_fragment_counts_for_chromosomes'
hg clone https://toolshed.g2.bx.psu.edu/repos/rachel-929292/extract_fragment_counts_for_chromosomes

Changeset 1:e1803849ab52 (2016-10-18)
Previous changeset 0:b255b5ea9708 (2016-10-18) Next changeset 2:910e6aeab6af (2016-10-19)
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added:
script_2_GC_correct_bdp-qad.xml
b
diff -r b255b5ea9708 -r e1803849ab52 script_2_GC_correct_bdp-qad.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/script_2_GC_correct_bdp-qad.xml Tue Oct 18 09:18:48 2016 -0400
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@@ -0,0 +1,26 @@
+
+<tool id="script_2_GC_correct_bdp-qad" name="GC Corrected Chromosome Counter" version="0.1.0">
+ <description>for counting chromosomes</description>
+ <command interpreter="perl">script_2_GC_correct_bdp-qad.pl $input $output $input2 </command>
+ <inputs>
+ <param format="sam" name="input" type="data" label="Source file"/>
+        <param format="txt" name="input2" type="data" label="Source file"/>
+  </inputs>
+ <outputs>
+ <data format="tabular" name="output" />
+  </outputs>
+
+ <tests>
+ <test>
+ <param name= "input" value="1.sam"/>
+ <output name= "output" file="output"/>
+ </test>
+ </tests>
+
+
+ <help>
+ This tool aligns reads against Chromosomes
+ </help>
+
+</tool>
+