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Commit message:
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 92901862ebe87a9c12f026608a34fbee347c4c78 |
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modified:
autogenJB2.xml jbrowse2.xml |
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| diff -r bc57164eb270 -r e1a3d3221ed3 autogenJB2.xml --- a/autogenJB2.xml Fri Mar 01 01:03:09 2024 +0000 +++ b/autogenJB2.xml Fri Mar 01 02:22:44 2024 +0000 |
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| @@ -66,15 +66,12 @@ </tests> <help><![CDATA[ -JBrowse2-in-Galaxy -================== +Autogenerated JBrowse2 +====================== -JBrowse2-in-Galaxy offers a highly configurable, workflow-compatible -alternative to JBrowse1-in-Galaxy and Trackster. +Given a collection of datatypes suited for making JB2 tracks, this tool will create a working JBrowse2 configuration. +A paf track requires a nested collection with the paf file and all the genomes used in creating it. -Compared to JBrowse1-in-Galaxy, there is no support for alternative codons for unusual genomes, -and detailed track styling is not yet implemented. Send code. -JBrowse1 development has now ceased in favour of JBrowse2. Use and local viewing ===================== @@ -109,10 +106,6 @@ The JBrowse-in-Galaxy tool has been rejected by `a Galaxy IUC <https://github.com/galaxyproject/tools-iuc/issues>`__, reviewer. -It is maintained by https://github.com/fubar2 who you can help you -with missing features or bugs in the tool. For the record, he remains unconvinced by the reviewer's logic, -and disturbed by the distinctly coercive approach to introducing new code, -compared to the more usual method of providing a working PR. Options ------- |
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| diff -r bc57164eb270 -r e1a3d3221ed3 jbrowse2.xml --- a/jbrowse2.xml Fri Mar 01 01:03:09 2024 +0000 +++ b/jbrowse2.xml Fri Mar 01 02:22:44 2024 +0000 |
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| @@ -762,13 +762,6 @@ about how to run the command line tools to format your data, and which options need to be supplied and where. -The JBrowse-in-Galaxy tool has been rejected by `a Galaxy IUC -<https://github.com/galaxyproject/tools-iuc/issues>`__, reviewer. -It is maintained by https://github.com/fubar2 who you can help you -with missing features or bugs in the tool. For the record, he remains unconvinced by the reviewer's logic, -and disturbed by the distinctly coercive approach to introducing new code, -compared to the more usual method of providing a working PR. - Options ------- |