| Previous changeset 0:0801bffdfcc8 (2016-06-05) Next changeset 2:2d400172381a (2016-06-06) |
|
Commit message:
Added more dependencies |
|
modified:
snippy.xml tool_dependencies.xml |
| b |
| diff -r 0801bffdfcc8 -r e1b47f2236b6 snippy.xml --- a/snippy.xml Sun Jun 05 21:12:39 2016 -0400 +++ b/snippy.xml Mon Jun 06 00:33:24 2016 -0400 |
| b |
| @@ -2,7 +2,10 @@ <requirements> <requirement type="package" version="3.0">snippy</requirement> <requirement type="package" version="1.2">samtools</requirement> - <requirement type="package" version="0.9.20">freebayes</requirement> + <requirement type="package" version="0_9_20_b040236">freebayes</requirement> + <requirement type="package" version="0.7.12">bwa</requirement> + <requirement type="package" version="0.1.11">vcftools</requirement> + <requirement type="package" version="4.0">snpeff</requirement> </requirements> <stdio> <exit_code range="1:" /> |
| b |
| diff -r 0801bffdfcc8 -r e1b47f2236b6 tool_dependencies.xml --- a/tool_dependencies.xml Sun Jun 05 21:12:39 2016 -0400 +++ b/tool_dependencies.xml Mon Jun 06 00:33:24 2016 -0400 |
| b |
| @@ -6,10 +6,16 @@ <package name="samtools" version="1.2"> <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> - <package name="freebayes" version="0.9.20"> + <package name="freebayes" version="0_9_20_b040236"> <repository changeset_revision="059e6e3d99cc" name="package_freebayes_0_9_20_b040236" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="bwa" version="0.7.12"> <repository changeset_revision="6af9b24ddeee" name="package_bwa_0_7_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> + <package name="vcfftools" version="0.1.11"> + <repository changeset_revision="710efaae2ff8" name="package_vcftools_0_1_11" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="snpeff" version="4.0"> + <repository changeset_revision="792d8f4485fb" name="package_snpeff_4_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> </tool_dependency> |