| Previous changeset 2:a5145865e467 (2019-10-17) Next changeset 4:b08ac10aed96 (2021-06-07) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit 2e8d990fa8b6de085046195464071020b467ce5a" |
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modified:
est-abundance.xml |
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removed:
test-data/test_db/database.kraken test-data/test_db/database100mers.kraken test-data/test_db/hash.k2d test-data/test_db/library/added/9C7DdW7GAD.fna test-data/test_db/library/added/9C7DdW7GAD.fna.masked test-data/test_db/library/added/cWk1IBlK73.fna test-data/test_db/library/added/cWk1IBlK73.fna.masked test-data/test_db/library/added/prelim_map.txt test-data/test_db/library/added/prelim_map_QXr8C5PiOX.txt test-data/test_db/library/added/prelim_map_l8ftMYsZv0.txt test-data/test_db/opts.k2d test-data/test_db/seqid2taxid.map test-data/test_db/taxo.k2d |
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| diff -r a5145865e467 -r e1d4cab2daea est-abundance.xml --- a/est-abundance.xml Thu Oct 17 15:50:37 2019 -0400 +++ b/est-abundance.xml Sun Jan 19 04:34:14 2020 -0500 |
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| @@ -48,13 +48,13 @@ <param name="input" value="NC_003198.1_simulated_kraken_report.txt" ftype="tabular"/> <param name="level" value="S" /> <param name="bracken_database" value="test_entry"/> - <output name="report" file="NC_003198.1_simulated_bracken_report.txt" ftype="tabular"/> + <output name="report" file="NC_003198.1_simulated_bracken_report.txt" ftype="tabular"/> </test> - <test> + <test> <param name="input" value="NC_011750.1_simulated_kraken_report.txt" ftype="tabular"/> <param name="level" value="S" /> <param name="bracken_database" value="test_entry"/> - <output name="report" file="NC_011750.1_simulated_bracken_report.txt" ftype="tabular"/> + <output name="report" file="NC_011750.1_simulated_bracken_report.txt" ftype="tabular"/> </test> </tests> <help> |
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| diff -r a5145865e467 -r e1d4cab2daea test-data/test_db/database.kraken --- a/test-data/test_db/database.kraken Thu Oct 17 15:50:37 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,2 +0,0 @@ -C NC_003198.1 220341 910 220341:169 A:67 543:23 220341:9 A:42 220341:9 543:65 220341:134 543:2 220341:356 -C NC_011750.1 585057 910 585057:11 A:41 585057:116 A:67 543:24 585057:7 A:42 585057:10 543:64 585057:134 543:2 585057:358 |
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| diff -r a5145865e467 -r e1d4cab2daea test-data/test_db/database100mers.kraken --- a/test-data/test_db/database100mers.kraken Thu Oct 17 15:50:37 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,2 +0,0 @@ -NC_003198.1 220341 220341 910 0:2 543:23 220341:786 -NC_011750.1 585057 585057 910 0:2 543:24 585057:785 |
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| diff -r a5145865e467 -r e1d4cab2daea test-data/test_db/hash.k2d |
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| Binary file test-data/test_db/hash.k2d has changed |
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| diff -r a5145865e467 -r e1d4cab2daea test-data/test_db/library/added/9C7DdW7GAD.fna --- a/test-data/test_db/library/added/9C7DdW7GAD.fna Thu Oct 17 15:50:37 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,17 +0,0 @@ ->NC_003198.1 Salmonella enterica subsp. enterica serovar Typhi str. CT18, complete genome -AGAGATTACGTCTGGTTGCAAGAGATCATAACAGGGGAAATTGATTGAAAATAAATATAT -CGCCAGCAGCACATGAACAAGTTTCGGAATGTGATCAATTTAAAAATTTATTGACTTAGG -CGGGCAGATACTTTAACCAATATAGGAATACAAGACAGACAAATAAAAATGACAGAGTAC -ACAACATCCATGAACCGCATCAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGT -AACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGAACAGTGCGG -GCxxxxxxxxCGACCAGAGATCACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGT -ACATCAGTGGCAAATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATTCC -AGGCAAGGGCAGGTAGCGACCGTACTTTCCGCCCCCGCGAAAATTACCAACCATCTGGTG -GCGATGATTGAAAAAACTATCGGCGGCCAGGATGCTTTGCCGAATATCAGCGATGCCGAA -CGTATTTTTTCTGACCTGCTCGCAGGACTTGCCAGCGCGCAGCCGGGATTCCCGCTTGCA -CGGTTGAAAATGGTTGTCGAACAAGAATTCGCTCAGATCAAACATGTTTTGCATGGTATC -AGCCTGCTGGGTCAGTGCCCGGATAGCATCAACGCCGCGCTGATTTGCCGTGGCGAAAAA -ATGTCGATCGCGATTATGGCGGGACTCCTGGAGGCGCGTGGACATCGCGTCACGGTGATC -GATCCGGTAGAAAAACTGCTGGCGGTGGGCCATTACCTTGAATCTACCGTCGATATCGCG -GAATCGACTCGCCGTATCGCCGCCAGCCAGATCCCGGCCGATCACATGATCCTGATGGCG -GGCTTTACTG |
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| diff -r a5145865e467 -r e1d4cab2daea test-data/test_db/library/added/cWk1IBlK73.fna --- a/test-data/test_db/library/added/cWk1IBlK73.fna Thu Oct 17 15:50:37 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,17 +0,0 @@ ->NC_011750.1 Escherichia coli IAI39 chromosome, complete genome -GCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTxxxxxxxGAGTGTCT -GATAGCAGCTTCTGAACTGGTTACCTGCCGTGAGTAAATTAAAATTTTATTGACTTAGGT -CACTAAATACTTTAACCAATATAGGCATAGCGCACAGACAGATAAAAATTACAGAGTACA -CAACATCCATGAAACGCATTAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGTA -ACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC -xxxxxxxxCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTAC -ATCAGTGGCAAATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCCAG -GCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGC -GATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACG -TATTTTTGCCGAACTTCTGACGGGACTCGCCGCTGCCCAACCGGGATTCCCGCTGGCGCA -ACTGAAAACTTTCGTCGATCAGGAATTTGCCCAAATAAAACATGTCCTGCATGGCATTAG -TTTGTTGGGGCAGTGCCCGGATAGCATCAACGCTGCGCTGATTTGCCGTGGCGAGAAAAT -GTCGATCGCCATTATGGCCGGCGTATTAGAAGCGCGCGGTCACAACGTTACCGTTATCGA -TCCGGTCGAAAAACTGCTGGCAGTGGGGCATTACCTCGAATCTACCGTCGATATTGCTGA -GTCCACCCGCCGTATTGCGGCAAGTCGTATTCCGGCTGATCACATGGTGCTGATGGCAGG -TTTCACCGCC |
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| diff -r a5145865e467 -r e1d4cab2daea test-data/test_db/library/added/prelim_map.txt --- a/test-data/test_db/library/added/prelim_map.txt Thu Oct 17 15:50:37 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,2 +0,0 @@ -ACCNUM NC_011750.1 NC_011750 -ACCNUM NC_003198.1 NC_003198 |
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| diff -r a5145865e467 -r e1d4cab2daea test-data/test_db/library/added/prelim_map_QXr8C5PiOX.txt --- a/test-data/test_db/library/added/prelim_map_QXr8C5PiOX.txt Thu Oct 17 15:50:37 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,1 +0,0 @@ -ACCNUM NC_003198.1 NC_003198 |
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| diff -r a5145865e467 -r e1d4cab2daea test-data/test_db/library/added/prelim_map_l8ftMYsZv0.txt --- a/test-data/test_db/library/added/prelim_map_l8ftMYsZv0.txt Thu Oct 17 15:50:37 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,1 +0,0 @@ -ACCNUM NC_011750.1 NC_011750 |
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| diff -r a5145865e467 -r e1d4cab2daea test-data/test_db/opts.k2d |
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| Binary file test-data/test_db/opts.k2d has changed |
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| diff -r a5145865e467 -r e1d4cab2daea test-data/test_db/seqid2taxid.map --- a/test-data/test_db/seqid2taxid.map Thu Oct 17 15:50:37 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,2 +0,0 @@ -NC_003198.1 220341 -NC_011750.1 585057 |
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| diff -r a5145865e467 -r e1d4cab2daea test-data/test_db/taxo.k2d |
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| Binary file test-data/test_db/taxo.k2d has changed |