| Previous changeset 40:1e66f05a23aa (2014-07-23) Next changeset 42:6dceb276bb35 (2014-07-23) |
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Commit message:
Fixed tool versions |
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modified:
geneBody_coverage.xml infer_experiment.xml tool_dependencies.xml |
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| diff -r 1e66f05a23aa -r e1dd49718284 geneBody_coverage.xml --- a/geneBody_coverage.xml Wed Jul 23 10:44:50 2014 -0400 +++ b/geneBody_coverage.xml Wed Jul 23 10:52:30 2014 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="rseqc_geneBody_coverage" name="Gene Body Converage (BAM)" version="1.1"> +<tool id="rseqc_geneBody_coverage" name="Gene Body Converage (BAM)" version="2.3.9"> <description> Read coverage over gene body. </description> |
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| diff -r 1e66f05a23aa -r e1dd49718284 infer_experiment.xml --- a/infer_experiment.xml Wed Jul 23 10:44:50 2014 -0400 +++ b/infer_experiment.xml Wed Jul 23 10:52:30 2014 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="rseqc_infer_experiment" name="Infer Experiment" version="1.1"> +<tool id="rseqc_infer_experiment" name="Infer Experiment" version="2.3.9"> <description>speculates how RNA-seq were configured</description> <requirements> <requirement type="package" version="1.7.1">numpy</requirement> |
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| diff -r 1e66f05a23aa -r e1dd49718284 tool_dependencies.xml --- a/tool_dependencies.xml Wed Jul 23 10:44:50 2014 -0400 +++ b/tool_dependencies.xml Wed Jul 23 10:52:30 2014 -0400 |
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| @@ -1,13 +1,13 @@ <?xml version="1.0"?> <tool_dependency> <package name="R" version="3.0.1"> - <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository name="package_r_3_0_1" owner="iuc" /> </package> <package name="numpy" version="1.7.1"> - <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository name="package_numpy_1_7" owner="iuc" /> </package> <package name="rseqc" version="2.3.9"> - <repository changeset_revision="367d6fedfe41" name="package_rseqc_2_3_9" owner="lparsons" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository name="package_rseqc_2_3_9" owner="lparsons" /> </package> </tool_dependency> |