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filter_vcf.xml |
| b |
| diff -r a3f15f50a4af -r e252b0b9dd99 filter_vcf.xml --- a/filter_vcf.xml Thu Jun 16 08:26:49 2016 -0400 +++ b/filter_vcf.xml Thu Jun 16 10:44:40 2016 -0400 |
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| @@ -53,31 +53,31 @@ <option value="mq0f_ratio_option">MQ0F ratio</option> </param> <when value="gq_score_option"> - <param name="gq_score" type="integer" value="0" label="Minimum GC score" help="Type integer"/> + <param name="gq_score" type="integer" value="0" label="Minimum GC score" help="Type integer."/> </when> <when value="dp4_ratio_option"> - <param name="dp4_ratio" type="float" value="0.9" label="Minimum DP4 ratio" help="Type float"/> + <param name="dp4_ratio" type="float" value="0.9" label="Minimum DP4 ratio" help="Type float. Only samtools mpileup before version 1.3."/> </when> <when value="ad_ratio_option"> - <param name="ad_ratio" type="float" value="0.9" label="Minimum AD ratio" help="Type float"/> + <param name="ad_ratio" type="float" value="0.9" label="Minimum AD ratio" help="Type float. GATK only and samtools from version 1.3."/> </when> <when value="mq_score_option"> - <param name="mq_score" type="integer" value="30" label="Minimum MQ score" help="Type integer"/> + <param name="mq_score" type="integer" value="30" label="Minimum MQ score" help="Type integer."/> </when> <when value="min_depth_option"> - <param name="min_depth" type="integer" value="5" label="Minimum depth" help="Type integer"/> + <param name="min_depth" type="integer" value="5" label="Minimum depth" help="Type integer."/> </when> <when value="uncall_gt_option"> <param name="uncall_gt" type="text" value="" hidden="True"/> </when> <when value="mq0_ratio_option"> - <param name="mq0_ratio" type="float" value="0.05" label="Minimim MQ0 ratio" help="Type float"/> + <param name="mq0_ratio" type="float" value="0.05" label="Minimim MQ0 ratio" help="Type float. GATK only."/> </when> <when value="qual_score_option"> - <param name="qual_score" type="integer" value="30" label="Minimim quality score" help="Type integer"/> + <param name="qual_score" type="integer" value="30" label="Minimim quality score" help="Type integer."/> </when> <when value="mq0f_ratio_option"> - <param name="mq0f_ratio" type="float" value="0.05" label="Minimum MQ0F ratio" help="Type float"/> + <param name="mq0f_ratio" type="float" value="0.05" label="Minimum MQ0F ratio" help="Type float. Samtools only."/> </when> </conditional> </repeat> |