| Previous changeset 7:8d4f03b5fe9d (2021-06-21) Next changeset 9:276f5d8712d5 (2021-11-23) |
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Commit message:
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flye commit 7bec5df9cb30dd196ae99565d77547e12d05fa48" |
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modified:
flye.xml macros.xml test-data/result1_assembly.fasta test-data/result1_assembly_graph.dot test-data/result1_assembly_graph.gfa test-data/result1_assembly_info.txt |
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added:
test-data/ecoli_01.fastq.gz test-data/ecoli_02.fastq.gz test-data/ecoli_03.fastq.gz test-data/ecoli_04.fastq.gz test-data/ecoli_05.fastq.gz test-data/ecoli_06.fastq.gz test-data/ecoli_07.fastq.gz test-data/ecoli_hifi_01.fastq.gz test-data/ecoli_hifi_02.fastq.gz test-data/ecoli_hifi_03.fastq.gz test-data/ecoli_hifi_04.fastq.gz test-data/ecoli_hifi_05.fastq.gz test-data/ecoli_hifi_06.fastq.gz test-data/ecoli_hifi_07.fastq.gz test-data/ecoli_hifi_08.fastq.gz test-data/ecoli_hifi_09.fastq.gz test-data/nanopore.fasta.gz test-data/result1.log |
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removed:
test-data/nanopore.fasta test-data/result2_assembly.fasta test-data/result2_assembly_graph.dot test-data/result2_assembly_graph.gfa test-data/result2_assembly_info.txt test-data/result3_assembly.fasta test-data/result3_assembly_graph.dot test-data/result3_assembly_graph.gfa test-data/result3_assembly_info.txt test-data/result4_assembly.fasta test-data/result4_assembly_graph.dot test-data/result4_assembly_graph.gfa test-data/result4_assembly_info.txt |
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| diff -r 8d4f03b5fe9d -r e27815e82dd4 flye.xml --- a/flye.xml Mon Jun 21 08:37:37 2021 +0000 +++ b/flye.xml Wed Jun 30 20:02:51 2021 +0000 |
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| b'@@ -1,146 +1,390 @@\n-<tool id="flye" name="Flye assembly" version="2.8.2+galaxy0">\n- <description>of long and error-prone reads</description>\n+<tool id="flye" name="Flye" version="@TOOL_VERSION@+galaxy@SUFFIX_VERSION@" profile="20.01">\n+ <description>de novo assembler for single molecule sequencing reads</description>\n <macros>\n <import>macros.xml</import>\n </macros>\n <expand macro="requirements" />\n+ <expand macro="edam_ontology"/>\n <version_command>flye --version</version_command>\n- <command detect_errors="exit_code">\n- <![CDATA[\n-\n- #for $counter, $input in enumerate($inputs):\n-\n- #if $input.is_of_type(\'fastqsanger\', \'fastq\'):\n- #set $ext = \'fastq\'\n- #elif $input.is_of_type(\'fastqsanger.gz\', \'fastq.gz\'):\n- #set $ext = \'fastq.gz\'\n- #elif $input.is_of_type(\'fasta.gz\'):\n- #set $ext = \'fasta.gz\'\n- #elif $input.is_of_type(\'fasta\'):\n- #set $ext = \'fasta\'\n+ <command detect_errors="exit_code"><![CDATA[\n+ #for $counter, $input in enumerate($inputs):\n+ #if $input.is_of_type(\'fastqsanger\', \'fastq\'):\n+ #set $ext = \'fastq\'\n+ #elif $input.is_of_type(\'fastqsanger.gz\', \'fastq.gz\'):\n+ #set $ext = \'fastq.gz\'\n+ #elif $input.is_of_type(\'fasta.gz\'):\n+ #set $ext = \'fasta.gz\'\n+ #elif $input.is_of_type(\'fasta\'):\n+ #set $ext = \'fasta\'\n+ #end if\n+ ln -s \'$input\' ./input_${counter}.${ext} &&\n+ #end for\n+ flye\n+ $mode\n+ #for $counter, $input in enumerate($inputs):\n+ ./input_${counter}.$ext\n+ #end for\n+ -o out_dir\n+ -t \\${GALAXY_SLOTS:-4}\n+ -i $iterations\n+ #if $hifi_error:\n+ --hifi-error $hifi_error\n #end if\n- ln -s \'$input\' ./input_${counter}.${ext} &&\n- #end for\n-\n- flye\n- $mode\n- #for $counter, $input in enumerate($inputs):\n- ./input_${counter}.$ext\n- #end for\n-\n- -o out_dir\n- -t \\${GALAXY_SLOTS:-4}\n- -i $i\n- #if $m:\n- -m \'$m\'\n- #end if\n- #if str($asm.asm_select) == "true":\n- --asm-coverage \'$asm.asm\'\n- -g \'$asm.g\'\n- #end if\n- ${plasmids}\n- ${meta}\n- ${no_trestle}\n- 2>&1\n+ #if $min_overlap:\n+ -m $min_overlap\n+ #end if\n+ #if $asm.asm_select == \'true\':\n+ --asm-coverage $asm.asm_coverage\n+ -g \'${asm.genome_size}\'\n+ #end if\n+ $plasmids\n+ $meta\n+ $trestle\n ]]></command>\n <inputs>\n <param name="inputs" type="data" format="fasta,fasta.gz,fastq,fastq.gz,fastqsanger.gz,fastqsanger" multiple="true" label="Input reads" />\n <param name="mode" type="select" label="Mode">\n <option value="--nano-raw">Nanopore raw</option>\n <option value="--nano-corr">Nanopore corrected</option>\n+ <option value="--pacbio-hifi">PacBio HiFi</option>\n <option value="--pacbio-raw">PacBio raw</option>\n <option value="--pacbio-corr">PacBio corrected</option>\n- <option value="--subassemblies">high-quality contig-like input</option>\n+ <option value="--subassemblies">High-quality contig-like input</option>\n </param>\n- <param argument="-i" type="integer" value="1" label="number of polishing iterations" />\n- <param argument="-m" type="integer" optional="true" label="minimum overlap between reads (default: auto)" />\n-\n+ <param argument="--iterations" type="integer" value="0" label="Number of polishing iterations" \n+ help="Polishing is performed as the final assembly stage. By default, Flye runs one polishing iteration. Additional iterations \n+ might correct a small number of extra errors (due to improvements on how reads may align to the corrected assembly). If the \n+ parameter is set to 0, the polishing is not performed.'..b'contains contigs and possibly scaffolds (see below).\n+ - Final repeat graph: note that the edge sequences might be different (shorter) than contig sequences, because contigs might include multiple graph edges.\n+ - Extra information about contigs (such as length or coverage).\n+\n+Each contig is formed by a single unique graph edge. If possible, unique contigs are extended with the sequence from flanking unresolved repeats on the graph. Thus, \n+a contig fully contains the corresponding graph edge (with the same id), but might be longer then this edge. This is somewhat similar to unitig-contig relation in \n+OLC assemblers. In a rare case when a repetitive graph edge is not covered by the set of "extended" contigs, it will be also output in the assembly file.\n+\n+Sometimes it is possible to further order contigs into scaffolds based on the repeat graph structure. These ordered contigs will be output as a part of scaffold in \n+the assembly file (with a scaffold prefix). Since it is hard to give a reliable estimate of the gap size, those gaps are represented with the default 100 Ns. \n+assembly_info.txt file (below) contains additional information about how scaffolds were formed.\n+\n+Extra information about contigs/scaffolds is output into the assembly_info.txt file. It is a tab-delimited table with the columns as follows:\n \n-You must provide an estimate of the genome size as input,\n-which is used for solid k-mers selection. The estimate could\n-be rough (e.g. withing 0.5x-2x range) and does not affect\n-the other assembly stages. Standard size modificators are\n-supported (e.g. 5m or 2.6g).\n+ ::\n+\n+ - Contig/scaffold id\n+ - Length\n+ - Coverage\n+ - Is circular, (Y)es or (N)o\n+ - Is repetitive, (Y)es or (N)o\n+ - Multiplicity (based on coverage)\n+ - Alternative group\n+ - Graph path (graph path corresponding to this contig/scaffold).\n+\n+Scaffold gaps are marked with ?? symbols, and * symbol denotes a terminal graph node. Alternative contigs (representing alternative haplotypes) will have the same alt. \n+group ID. Primary contigs are marked by *.\n+\n+----\n+\n+.. class:: infomark\n+\n+**Algorithm Description**\n+\n+This is a brief description of the Flye algorithm. Please refer to the manuscript for more detailed information. The draft contig extension is organized as follows:\n+\n+ ::\n \n- ]]></help>\n+ - K-mer counting / erroneous k-mer pre-filtering\n+ - Solid k-mer selection (k-mers with sufficient frequency, which are unlikely to be erroneous)\n+ - Contig extension. The algorithm starts from a single read and extends it with a next overlapping read (overlaps are dynamically detected using the selected solid k-mers).\n+\n+Note that we do not attempt to resolve repeats at this stage, thus the reconstructed contigs might contain misassemblies. Flye then aligns the reads on these draft \n+contigs using minimap2 and calls a consensus. Afterwards, Flye performs repeat analysis as follows:\n+\n+ ::\n+\n+ - Repeat graph is constructed from the (possibly misassembled) contigs\n+ - In this graph all repeats longer than minimum overlap are collapsed\n+ - The algorithm resolves repeats using the read information and graph structure\n+ - The unbranching paths in the graph are output as contigs\n+\n+If enabled, after resolving bridged repeats, Trestle module attempts to resolve simple unbridged repeats (of multiplicity 2) using the heterogeneities between repeat copies. \n+Finally, Flye performs polishing of the resulting assembly to correct the remaining errors:\n+\n+ ::\n+\n+ - Alignment of all reads to the current assembly using minimap2\n+ - Partition the alignment into mini-alignments (bubbles)\n+ - Error correction of each bubble using a maximum likelihood approach\n+\n+\n+The polishing steps could be repeated, which might slightly increase quality for some datasets.\n+\n+\n+ ]]></help>\n <expand macro="citations" />\n </tool>\n' |
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| diff -r 8d4f03b5fe9d -r e27815e82dd4 macros.xml --- a/macros.xml Mon Jun 21 08:37:37 2021 +0000 +++ b/macros.xml Wed Jun 30 20:02:51 2021 +0000 |
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| @@ -1,23 +1,31 @@ <macros> + <token name="@TOOL_VERSION@">2.8.3</token> + <token name="@SUFFIX_VERSION@">0</token> <xml name="requirements"> <requirements> - <requirement type="package" version="2.8.2">flye</requirement> - <yield/> + <requirement type="package" version="@TOOL_VERSION@">flye</requirement> </requirements> </xml> + <xml name="edam_ontology"> + <edam_topics> + <edam_topic>topic_0196</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0525</edam_operation> + </edam_operations> + </xml> <xml name="citations"> <citations> <citation type="doi">10.1073/pnas.1604560113</citation> <citation type="bibtex"> -@misc{githubFlye, - author = {LastTODO, FirstTODO}, - year = {TODO}, - title = {Flye}, - publisher = {GitHub}, - journal = {GitHub repository}, - url = {https://github.com/fenderglass/Flye}, -}</citation> - <yield /> + @misc{githubFlye, + author = {Kolmogorov, Mijhail}, + year = {2021}, + title = {Flye}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/fenderglass/Flye}} + </citation> </citations> </xml> </macros> |
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| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/nanopore.fasta --- a/test-data/nanopore.fasta Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| b'@@ -1,418 +0,0 @@\n->bf06004a-705a-4fe9-942a-2dcabf04766e\n-CTCCATTGTACTTCACCAGTTGCATTATTGTTGCTAGAGACAGCGCTGTGACATAGCCTGCAGCACTTATTTCCTTCGTATCTTATATATGTATATATATGTGCAATGTCATGTGATAGTGCTGGAGGAGGTATAGGCACACATATAAGCGATCAGCAGCCAGCAGGAGAACGCGACCAGGCAATTAGCTGCAAGAGTGGGTGCTCGTATTGCAATAATACACTTGTGCTGGATGTTTATGTACACATTACAGCAAGTGCACAATTATGAATACACATAGGTACAGTGCTTAACCGATATGTGTGCATACTACAATGAGTGAAAATTTGTATTCTAGGAGGTCGCAGAATCGCGGTACTTCTTCAACTGTTAAAGAAGTGCCGTCACAAAGAGACCAAAAAACTCAATGCTGTGCAAAGGTTAATCTAACAGGCTTGGAGCCGCGCAATCCCCTGGTGCGGAGACCAGTCTACATCGCCGTGAAGACGGATGTAAATTACGCGACCGCCAGACCATAGAAGTTGTGTCGTTATTGTGCGGCAAACTGGCAAAAAATCACACACAGTGAGTCGCGCCATAGTTCTGCTGTCACGCGAATTGTGCGCCTGTTTCATGTAATAGGTAATTTATTATCTTGCGATTGTTGCAGCGGATAAGCTGGCAATGCTTGCAGCGAACGATCTGGAGGGAGGCGTTGCCAGATCAACCATTAATGATCAATGTTGATAGTACGTGGGCGAAATTCATTAAAATTTAAAATTAGGCAAATTTAATTTAATTTAATTTTGATTGGTAACTGGGGCGCACAAGTCTTTAAGAAAGGGAAAGGCACAAAGGTCCGGACAGATAAGCTCATCTCACCGTGTAACAGTTGCCTAAGCAGAGGCTCTGGTGTGTCCGAGTCAGTGCAAACCTCCATCCGTAAAAGCCGGAAATCCGTATTTGCGGCTGACCCTGGAAACAGCAGGCCATCCTTCAGTTGATGGACAGCCTGCCAGTGGGGCGATTTCGATCGCAGCGACGTTCAGAATCCCCGACTTTCGAGATCGGAGTCAACCCGACCCATGGTGATCGGTCCCGTCGGTAATGGCAAAGGGGTGAGCTTTACGCAGGCCCCAGCCGCCGTTGACGCTATCGACCCAGCGATGCGGAATTGAAACCGGCATCACATTTTGGCTCTAAGTCGAAGACGATGGACCCATCGCCATTACCATCACCAAAAAAGACGGGAGGAGATCCCCAGCTGGTTCCCCTCATCGGTCTTCGGACTTGACCACTGCTCTCCAGAACGAGGACCTGAGGCGCGCACCAGGATGAATGAATCCAGCCCCCCTTCTATCCACGTGAGACCCAACGACACACGCGCACTTAACACGGGGCCAAGGCACGCCGCTGAACTCTATTAACAACGGGCGATAGAACATGCAGAAGGTACTACTGGCAGCACCGCTTGAAGAGCAGCGCTTGCAGACGGAGGGTACACAAAAAAGCCACCAAAGGCTCCACAAAATGCGCAGGTACACCCACGTTGCGGATTGTAAAGTCAGGCATACAGAGCAACCCGTTGGATGGCAACGGTGAGCGTGGCATCCACAACAGGTCCAAATGAGCAGCTAATGCATCTGTCGCCAGAATGCTAGCACGGGTGCAGAGGCACTCATCATTAAGCAGGAGAGGCTTCGTACGCAGAGATGCTACCGGAAGCTAAGATCGAGCCTTAGCGAACTGGTTGAAAAAAATCCGGAAGAGAGCAGAAGTGATCCTCTGTTGCTTGGCAGGTGGGGAAAGCTTCGGAAAGCGTTCCGTTTAAAACGACCTGGAAGCGGCGCTCAATGACTTAGCCTCTGTGTGTGCTGGAGCTGAAAGAATAATGGCGCTATCTTGGCGGATTAGGACGAAGTACGACAATCCCACAGCTGCTTGGTCGCCCAATTCAGGGCCTGCGAATCCTGAAGATATCAGGGGCCTTCGCGGTATATGCAGATTGCAAATAGCCTCAGTGCTGCTGAACGCGAACGTTGCGATACCAATCCTTAAACAGGGCACCATAATCGTTGGATGGTCAGATGTCGTATTCACCCGGGACCTCCGACCCACGAGATGCTACAGGTGTGCGGCTTTGCTTAACGGGCATCGATCAGCAACCTGCAAGGACACTGACAGGGCAGACTGCTGTCTTAGATGCGTGGGCGTGGGCACAAGGCAAAGGGGTGCGTTGCTGCGCAAAATATATACCTGATCTGCAGCAGCGAGAAGGGTGGACGAAACGCGGCAGGAGGGTAGCTTTGCGTGCCCGACTTACAGAGCGACACTAAAAGATGCCAAGAGCCACATGCACGCTCATATTGGCGTAGTACGGCATGTCAATCATTGCGCAGCAACTCAGAGCATACTGGCGAACTGCGGTGTATCACTCCTAAGCGAACCACCGCGATACCATTTGGTGGACGAAAATCGTCCCGCGATCCTTGACCTTGAGGCGGAAGCAGCATCAAATGCTGCGAAACCTATACAAGTCGGGCTGGCTGCTGCGGGGTGTATAAGCATGCGAAGTTAAAACACGTGCACATGTACAGCTGCTATACGCTCCGCCGGTAAACGCAGTTCGAGAACTTCTGGAGGCGCTTTCCATTGGACCATGCACGAGAAGGGCGAAGCCCGAAGGTCGTACCGGCGACACAATGCTGGACAGTGGAATGGGGCGGCATCCAGCACCAGAAGACGGAAGCTGTGATTGACGCCGGCTGGACTCATACTGGGCGATGATGGACGGAAAGGCGACGTTTGCTAACGATACGTCCTTTATTGACGACCGCTTTGTCGCGGGCTGGTAGACAACAACAACTGGATGGTCCATGACGTCATGACGTAGCGACCATGCCCTGATGCCTTGCTTCTCCCCGGAGGTGTATGCAGCGAACAGCCGGAAGCGGGACCTGGAGGAAGATCGATGAAATTACATGCTGGCCTATCAGATCAATTCGCAAAAATCCCAGACGCAAGAGTATGGCGGCAGGCCTCATGCTGGAAGAATGTCTGGGCGCAATCTGCCAGGAAAAAAAATAAGGCTGGCTGCAAACCACCCGTTTACTGGTGGAACGCCAACTACGGTGCGGAGTTGCCTCGGGAGAACGGCACGAGCCAGAGGCGGTACCCACCACGCGGAACTCTTGGGGAGGCTTTCCAGGAAACGGCACTTAGAGTTCCAAGCACGGCATCGCGCGGCTGCAGGGACGCGGTGGGCAGGCACAGGATGGCGTGGGCAATATCTGGAGACGCACTCGCCTACAAGCGCAGCGGAAGGCCCCACAGGAGGAGAGCAGCCAGCCCATCCGACCCGACAACAACATACTGGGGCTGTTTAAGCAGACCACTATGGAGGCCGGTAGCCCTGCCCAGATTTGCCGTGCGTCGGGGCAAGTCGTCGAGGCAGCGCTGACGATGTGGCAATCACAGCCGGCGGAGCTAGCAGCAATAGCGTACAAGACCGAAGCAGTCCTACTAAGCAGCAGGAAAAAGATGGAGAACATGCTGGTCTCCGTCGAAGTCAAGGGAGGACTCTGCGAGAGTCCCCTAAAGTACCTGGGGGTGAATCGCAGACTATGGTTCAGGAGACCACCAGTACACGCCAGCAGAGAGCCAGCAGTCACATCCTCTTCGTTGGCGGGAGGCTTATGCCCCGTCAGGCCCAGGTACCGGCGAAACTTGCGCGCTGGTATGCAGTAGCAAAGAGCTTCGCTGCTATACGCTGCACCAGTCTGAACGAAATGCCACTTGCAGGGGTCTCGCCACCTGAAAGGAGCTGATTGCTACCAATGGCCCTCAGGCTCATTGTAGGGATTCAGGTTCATATCCAGACGCGGCGCGCTGGCGCTGACAGGCCGATTGATCTGGAGATCAGGCTCTCAAGCGCTTATGCGGGTGGCTTCCAGGCAAGAGGC'..b'TATTTGGAAATTAAAGTCAACGCCCTGAAATCTGCGCAAAATAACTTTTACGTGGGATAACTGCCCAGAGTGTCATTTAATGGATCAGCAATCCCACTAGAAATTATCGATCGCAATGGCG\n->88a5ba1b-a388-48d1-964c-71f836904291\n-TTGTACTTCGTTCAGTTACGTATTGCTGTGGAAATCTTTTAAGTCTTCTGACGTTGTTATTGTATTTACCAAATTTAAGGCTAAAGTTATTTTCGCTGTGTTCTTGGTCTGTCTATATATTTTTAATGTTTTGCTATTTCTTCTTTAACATAGGAGTTCTAAGTCTTTATGGATACTTGCATTTGAAATATAAAATGGGCAATTAACAATTTGTCTTAATATTTTTTGATTGGTAGCATTATGAATCTCAATATTTGAGTTGCTGGCAGTACCCAAAGCTGTATGTCCATAAGTCATGGGCTTTAGTATAGCTTTGTATAAACCGGACTTTATTTTGAGTAGTTTGCAGATTTTCAGCCAAACAACCAGGTCATCTCAAACTTTTGATTTAGTTGCTGGCGCTTTGCTTTTATGTTTATGTCTTCCCACGTTAGTCTACGATCGATACTTTGTGGGATTGCTGATCCCTCTTCACTTAGCTAAAGTTATTTGCGCAGATTTCAGGGCGATTGACTTTAATTTTCAAATAAGAAACCAACTTTCAATATAAAAGGCGTAGCTCTGCTTGCAGGAGTGAGAACTTCCCTCTTTAGATGAGCTTGTAATAATATAGCTGTATCATTTGTTACAAGGCAAATTATTTATTACCAGCATATCTGCCACGTTACAGTGTATCAAGACAGTTACTAAGACTCTTCCTTGTGGGACTCCAGCTTTATAAAGTGCAAGGGCAGTAATTCATTTTTTTGTTGCAAATAAAATTGTCTATTGGTTAAAGTATGACTTTAATATTATAAAATATGGTTTTATATGGAAATTATGGTTTCGATCAAACGCTTGTTAAACGTCAAAAGAAATTTAGCAATTATATTTTTGCTCTCAAATGTGACGGAAATTTCATTTTAATCCTGTGACATTGCTCAGAGGTTCCGTGGCCCTCTTCAATCCAAACTGATTGTTTGGTGCATGATAACGAATTCTTCAAGATTGACAACATTCTCTTTAAAATTATTTTTTAAATACTTTAGAAAATATTGACAACAAACTAATGGGACGGTACAATGTCACTTCATTTTCTGTTTGGTTTAAGGATTCCTAATTTCTGCACATTTCCATTGGCTTGGGAAGTGGTCAACTCTAACCATATTTTTTTTTCAAGGCTATGCCATCTTTTACATCCCCAATCTGGAACCTTTTACTTTTAGCCATTTTACAGTGACATTAATGCATTTACAATGCTATAATCAAAAATATTGAACAAATTGTCACTCATTTTGCATATTTCAAATGCAAGTATCTAAGACTTAGGAATCCCTTATGTTAAAGAAGAAAATGGCAAAACATATTGAAAATATAGACAGACCAAGAGTACATGAAAATAGCAGTTCAGTAAATAATAACAACAAATCGAAAGATAAAAATTCTGTGTATGTTG\n->5f3b0d4d-e80b-4ec9-bc9f-8f642acef345\n-TTGTGTACTTCGTTCAGTTACGTATTGCTAAATGAAGTGACATTGTACCGTCCCGATAGTTTGTTGTCAGTACTTTTCCTAAAGTATTTAAAAATAATTTTTAAAGAGAATGTTGTCAATCTTGGAGGAAGAAATTCGCTATCATACCCAAACACCAGTTTGGATTCGGGAAAGAAGACCACGGAACCCCTGAGCAATGTCACAGGATTAAAAAATGAAATTTCGTCAGCATTTGAGAGCAAAAATACTGCATAATTTCTTGACGTTCTAACAAGCGTTGATCGAGAGTCTGGCGTGGCTTATCATATAAAACCATATTTACATATTATTAAGTCATACTTAACCAATAGACAATTTATTTGCAACAAAAAAATGAATACTCGCCCTTGCACTTTATAAAAGCTGGAATTCCCACAAGGAAGAGTCTTAGTAACTGTCTTATACCCTGTAACGGCGAATATGCCGGTATTAAATACTACTACCTGTAACAAATGATACAGCTATATTAGCTAAGCTCATCTAAAGAGAGGAAGCCTCACAGGCAACTCCTGCAAGCAAGAGCTACGCCTTATTGAAAGCTGGTTTCTTATTTGGAAAATTAAAGTCAACGCCACAGAAATCTGCGCAAATAACTTTTGCATTAAGAGGTAACTTTGCCAGAAGTGTCATTTAATGGATCAGCAATCCCACAAGTATCGATCACCGAACTAACGTGGAAACACATAAACATAAAAGCAAAGCGCCAGCAACTAAATCAAAAAAGTTTGAAGATGACCTGGTTTGCTTGGCCGAAAATCTGCAACCACTCTGGAAAATAAAGTCCGTTTATACAAAGCTATACTAAAGCCCATGTGGACTTATGACATACAGCTTTGGGGTACTATAACAATAACTCAAATATTGAGAGATTCTACAATGCTACCAATCAAAAATATTAAGACAAATTGTTAATGCTCCATTTTATATTTCAAATGCAAAGAATATCTATAAAGAGACTTAGGAATCCCTTATGTTAAGAAATAGCAAAACATATTAAAATATGAACCAGACCAAGAACATGTGAAAATAACTTGTATGAAATTTGGTAAATAATAATAACAACGTCGAGAGACTTAAAGATTTCACGTTAACTGAATCTCCCCGACAAAGTTTTAAGTATTAAAAACATGTTATGGTAGGGTATGTAGTAGGGATTAATGGATAACTACTGCCTCTGGTAATTTAAAGATTAATTATAAGGGTTACTTGTCATACTTTTTAAAGACAGATTGTAAATAAAAGAGAAAAAAAATAGTCTAATATTTGAAATTTATTTTGTGATATTATGATTCGGCTATTACTATTTATAGCTATATTTAAATAATAATAACATTAAAGACAATGCAAAACAAATTTCTCGCATGGTGCCAATTGATTAAAAATAATATAGATTTAAAGTCTAAGAACTTCTAAGGTGAAGGGCATATTTTGTAGGTACAATGCAAAAAATAATAATTCTGTACCATTACTCATGCATGCTGCTTCAGTTTCGGCTAAAAGAAATGAAAAGGACATGGCAGTTGTATTAACAGCAGCTGGTAACAACGTATATCAATAATATAAAGAAAAATGTTCTGTTCTGAGCCCCACACAAATGTCCGTCGACAATGCATTAGCCTTTTATATTTGAAAACAGTTTACAAAAGCAATACATCAATTTAAAACGGAATACAAAGTTTGATACCCATCATCCTGATGTTCTTAATGCTAAACTAAAGCTTAGTTGAGCTACAGCAACAAACCACACAACTTCGCCCGGATTCTTGAAATGCAGTGTGAAACTTTTCAAAGCAAATACCAATTCGATAGAATGCCAATTAATATTTAGCTATGGATATGATGGATCAACTGGTCAGGTATTTATAAAGCAACGTTATGAAATCGGTGCTGTATGTGGTAGGCTGCTCCTTCTACCCTTTCCCTTTACTCTTTTGCATACATTCTAGTCATACATACCCTAGTATACATAGCCAATCTAGTCATAGCTTATACATTCATACACCCATCCTTACTATATACATACATACAAATATTATCGGCTTATCGACTGATCGACTCGCCACTCTGCGAAGCCGCCGGCAGTCGATCGCTGTTGAATAAGCTGAAGTACAGATCGAAATAAAGTAATTGAAATAGTATTCGAATATTAACTTCTGTAAACGGCGGCTAAAATCTCCAGAAGTGGGATTAATAATCCAAAATGGACGGTATTAAAATCATCCCCTTAACATTGACTTTTTTTTCGCTCCTACAAAGATTGGTGGTTGAAAGAAAGAAGATGATGATGATGCGGTGGGTCAGTCACATCTGTGTGGCTGCAC\n' |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/nanopore.fasta.gz |
| b |
| Binary file test-data/nanopore.fasta.gz has changed |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result1.log --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/result1.log Wed Jun 30 20:02:51 2021 +0000 |
| [ |
| b'@@ -0,0 +1,440 @@\n+[2021-06-30 16:00:39] root: INFO: Starting Flye 2.8.3-b1695\n+[2021-06-30 16:00:39] root: DEBUG: Cmd: /usr/local/bin/flye --pacbio-raw ./input_0.fastq.gz ./input_1.fastq.gz ./input_2.fastq.gz ./input_3.fastq.gz ./input_4.fastq.gz ./input_5.fastq.gz ./input_6.fastq.gz -o out_dir -t 1 -i 0\n+[2021-06-30 16:00:39] root: DEBUG: Python version: 3.9.2 | packaged by conda-forge | (default, Feb 21 2021, 05:02:46) \n+[GCC 9.3.0]\n+[2021-06-30 16:00:39] root: INFO: >>>STAGE: configure\n+[2021-06-30 16:00:39] root: INFO: Configuring run\n+[2021-06-30 16:00:39] root: INFO: Total read length: 7249289\n+[2021-06-30 16:00:39] root: INFO: Reads N50/N90: 11150 / 5790\n+[2021-06-30 16:00:39] root: INFO: Minimum overlap set to 5000\n+[2021-06-30 16:00:39] root: INFO: >>>STAGE: assembly\n+[2021-06-30 16:00:39] root: INFO: Assembling disjointigs\n+[2021-06-30 16:00:39] root: DEBUG: -----Begin assembly log------\n+[2021-06-30 16:00:39] root: DEBUG: Running: flye-modules assemble --reads ./input_0.fastq.gz,./input_1.fastq.gz,./input_2.fastq.gz,./input_3.fastq.gz,./input_4.fastq.gz,./input_5.fastq.gz,./input_6.fastq.gz --out-asm /tmp/tmpicy_msib/job_working_directory/000/8/working/out_dir/00-assembly/draft_assembly.fasta --config /usr/local/lib/python3.9/site-packages/flye/config/bin_cfg/asm_raw_reads.cfg --log /tmp/tmpicy_msib/job_working_directory/000/8/working/out_dir/flye.log --threads 1 --min-ovlp 5000\n+[2021-06-30 16:00:39] DEBUG: Build date: Mar 27 2021 19:08:40\n+[2021-06-30 16:00:39] DEBUG: Total RAM: 15 Gb\n+[2021-06-30 16:00:39] DEBUG: Available RAM: 11 Gb\n+[2021-06-30 16:00:39] DEBUG: Total CPUs: 8\n+[2021-06-30 16:00:39] DEBUG: Loading /usr/local/lib/python3.9/site-packages/flye/config/bin_cfg/asm_raw_reads.cfg\n+[2021-06-30 16:00:39] DEBUG: Loading /usr/local/lib/python3.9/site-packages/flye/config/bin_cfg/asm_defaults.cfg\n+[2021-06-30 16:00:39] DEBUG: \tbig_genome_threshold=29000000\n+[2021-06-30 16:00:39] DEBUG: \tmeta_read_filter_kmer_freq=100\n+[2021-06-30 16:00:39] DEBUG: \tmax_coverage_drop_rate=5\n+[2021-06-30 16:00:39] DEBUG: \tmax_extensions_drop_rate=5\n+[2021-06-30 16:00:39] DEBUG: \tchimera_window=100\n+[2021-06-30 16:00:39] DEBUG: \tmin_reads_in_disjointig=4\n+[2021-06-30 16:00:39] DEBUG: \tmax_inner_reads=10\n+[2021-06-30 16:00:39] DEBUG: \tmax_inner_fraction=0.25\n+[2021-06-30 16:00:39] DEBUG: \tmax_separation=500\n+[2021-06-30 16:00:39] DEBUG: \tunique_edge_length=50000\n+[2021-06-30 16:00:39] DEBUG: \tmin_repeat_res_support=0.51\n+[2021-06-30 16:00:39] DEBUG: \tout_paths_ratio=5\n+[2021-06-30 16:00:39] DEBUG: \tgraph_cov_drop_rate=5\n+[2021-06-30 16:00:39] DEBUG: \tcoverage_estimate_window=100\n+[2021-06-30 16:00:39] DEBUG: \tmax_bubble_length=50000\n+[2021-06-30 16:00:39] DEBUG: \tloop_coverage_rate=1.5\n+[2021-06-30 16:00:39] DEBUG: \trepeat_edge_cov_mult=1.75\n+[2021-06-30 16:00:39] DEBUG: \tweak_detach_rate=5\n+[2021-06-30 16:00:39] DEBUG: \ttip_coverage_rate=2\n+[2021-06-30 16:00:39] DEBUG: \ttip_length_rate=2\n+[2021-06-30 16:00:39] DEBUG: \tlow_cutoff_warning=1\n+[2021-06-30 16:00:39] DEBUG: \thard_min_coverage_rate=10\n+[2021-06-30 16:00:39] DEBUG: \tkmer_size=17\n+[2021-06-30 16:00:39] DEBUG: \tuse_minimizers=0\n+[2021-06-30 16:00:39] DEBUG: \treads_base_alignment=0\n+[2021-06-30 16:00:39] DEBUG: \tassemble_kmer_sample=1\n+[2021-06-30 16:00:39] DEBUG: \trepeat_graph_kmer_sample=1\n+[2021-06-30 16:00:39] DEBUG: \tread_align_kmer_sample=1\n+[2021-06-30 16:00:39] DEBUG: \tmeta_read_top_kmer_rate=0.40\n+[2021-06-30 16:00:39] DEBUG: \tmaximum_jump=1500\n+[2021-06-30 16:00:39] DEBUG: \tmaximum_overhang=1500\n+[2021-06-30 16:00:39] DEBUG: \trepeat_kmer_rate=100\n+[2021-06-30 16:00:39] DEBUG: \tassemble_ovlp_divergence=0.10\n+[2021-06-30 16:00:39] DEBUG: \tassemble_divergence_relative=1\n+[2021-06-30 16:00:39] DEBUG: \trepeat_graph_ovlp_divergence=0.08\n+[2021-06-30 16:00:39] DEBUG: \tread_align_ovlp_divergence=0.25\n+[2021-06-30 16:00:39] DEBUG: \thpc_scoring_on=0\n+[2021-06-30 16:00:39] DEBUG: \tadd_unassembled_reads=0\n+[2021-06-30 16:00:39] DEBUG: \textend_contigs_with_repeats=0\n+[2021-'..b' 16:02:00] DEBUG: \tread_align_kmer_sample=1\n+[2021-06-30 16:02:00] DEBUG: \tmeta_read_top_kmer_rate=0.40\n+[2021-06-30 16:02:00] DEBUG: \tmaximum_jump=1500\n+[2021-06-30 16:02:00] DEBUG: \tmaximum_overhang=1500\n+[2021-06-30 16:02:00] DEBUG: \trepeat_kmer_rate=100\n+[2021-06-30 16:02:00] DEBUG: \tassemble_ovlp_divergence=0.10\n+[2021-06-30 16:02:00] DEBUG: \tassemble_divergence_relative=1\n+[2021-06-30 16:02:00] DEBUG: \trepeat_graph_ovlp_divergence=0.08\n+[2021-06-30 16:02:00] DEBUG: \tread_align_ovlp_divergence=0.25\n+[2021-06-30 16:02:00] DEBUG: \thpc_scoring_on=0\n+[2021-06-30 16:02:00] DEBUG: \tadd_unassembled_reads=0\n+[2021-06-30 16:02:00] DEBUG: \textend_contigs_with_repeats=0\n+[2021-06-30 16:02:00] DEBUG: \tmin_read_cov_cutoff=3\n+[2021-06-30 16:02:00] DEBUG: \tshort_tip_length=20000\n+[2021-06-30 16:02:00] DEBUG: \tlong_tip_length=100000\n+[2021-06-30 16:02:00] DEBUG: Running with k-mer size: 17\n+[2021-06-30 16:02:00] DEBUG: Selected minimum overlap 5000\n+[2021-06-30 16:02:00] INFO: Reading sequences\n+[2021-06-30 16:02:01] DEBUG: Building positional index\n+[2021-06-30 16:02:01] DEBUG: Total sequence: 7249289 bp\n+[2021-06-30 16:02:01] DEBUG: Flipped 0\n+[2021-06-30 16:02:01] DEBUG: UPath 1: 1\n+[2021-06-30 16:02:01] DEBUG: Final graph contiain 1 egdes\n+[2021-06-30 16:02:01] DEBUG: Extending contigs into repeats\n+[2021-06-30 16:02:01] DEBUG: Covered 0 repetitive contigs\n+[2021-06-30 16:02:01] INFO: Generated 1 contigs\n+[2021-06-30 16:02:01] DEBUG: Writing FASTA\n+[2021-06-30 16:02:01] DEBUG: Generating scaffold connections\n+[2021-06-30 16:02:01] INFO: Added 0 scaffold connections\n+[2021-06-30 16:02:01] DEBUG: Writing Dot\n+[2021-06-30 16:02:01] DEBUG: Writing FASTA\n+[2021-06-30 16:02:01] DEBUG: Writing Gfa\n+[2021-06-30 16:02:01] DEBUG: Peak RAM usage: 0 Gb\n+-----------End assembly log------------\n+[2021-06-30 16:02:01] root: INFO: >>>STAGE: finalize\n+[2021-06-30 16:02:01] root: DEBUG: ---Output dir contents:----\n+[2021-06-30 16:02:01] root: DEBUG: out_dir/\n+[2021-06-30 16:02:01] root: DEBUG: 367.0 B assembly_graph.gv\n+[2021-06-30 16:02:01] root: DEBUG: 415.0 K assembly.fasta\n+[2021-06-30 16:02:01] root: DEBUG: 92.0 B params.json\n+[2021-06-30 16:02:01] root: DEBUG: 26.0 K flye.log\n+[2021-06-30 16:02:01] root: DEBUG: 409.0 K assembly_graph.gfa\n+[2021-06-30 16:02:01] root: DEBUG: 10-consensus/\n+[2021-06-30 16:02:01] root: DEBUG: 415.0 K consensus.fasta\n+[2021-06-30 16:02:01] root: DEBUG: 37.0 B chunks.fasta.fai\n+[2021-06-30 16:02:01] root: DEBUG: 30-contigger/\n+[2021-06-30 16:02:01] root: DEBUG: 409.0 K graph_final.gfa\n+[2021-06-30 16:02:01] root: DEBUG: 0.0 B scaffolds_links.txt\n+[2021-06-30 16:02:01] root: DEBUG: 111.0 B contigs_stats.txt\n+[2021-06-30 16:02:01] root: DEBUG: 367.0 B graph_final.gv\n+[2021-06-30 16:02:01] root: DEBUG: 414.0 K graph_final.fasta\n+[2021-06-30 16:02:01] root: DEBUG: 414.0 K contigs.fasta\n+[2021-06-30 16:02:01] root: DEBUG: 00-assembly/\n+[2021-06-30 16:02:01] root: DEBUG: 429.0 K draft_assembly.fasta\n+[2021-06-30 16:02:01] root: DEBUG: 20-repeat/\n+[2021-06-30 16:02:01] root: DEBUG: 414.0 K graph_before_rr.fasta\n+[2021-06-30 16:02:01] root: DEBUG: 183.0 B repeat_graph_dump\n+[2021-06-30 16:02:01] root: DEBUG: 367.0 B graph_before_rr.gv\n+[2021-06-30 16:02:01] root: DEBUG: 367.0 B graph_after_rr.gv\n+[2021-06-30 16:02:01] root: DEBUG: 414.0 K repeat_graph_edges.fasta\n+[2021-06-30 16:02:01] root: DEBUG: 129.0 K read_alignment_dump\n+[2021-06-30 16:02:01] root: DEBUG: --------------------------\n+[2021-06-30 16:02:01] root: INFO: Assembly statistics:\n+\n+\tTotal length:\t418805\n+\tFragments:\t1\n+\tFragments N50:\t418805\n+\tLargest frg:\t418805\n+\tScaffolds:\t0\n+\tMean coverage:\t15\n+\n+[2021-06-30 16:02:01] root: INFO: Final assembly: /tmp/tmpicy_msib/job_working_directory/000/8/working/out_dir/assembly.fasta\n' |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result1_assembly.fasta --- a/test-data/result1_assembly.fasta Mon Jun 21 08:37:37 2021 +0000 +++ b/test-data/result1_assembly.fasta Wed Jun 30 20:02:51 2021 +0000 |
| b |
| b'@@ -1,667 +1,6982 @@\n >contig_1\n-TTCGTTATTACTTCGTTCAGTTACGTATTGCTCGATTTTTTGGCATAAAGTCTAAAATTG\n-AGCTACAGACTGAAACTTTGTACATTTTGTTTTTCAAACCACAAATAGTTTGCACACACA\n-AAATTTGAAATCTGTGCGACCACTACTCCCTCTCTTGCCTCCCATATTAACTACTGGTAT\n-GACTCAGGATTCAACGAAATTTCATTTTTTTTTTTTTTTTTTTAAATAGAGATGTGTACA\n-TTATTGTTTTAAAAATAATCGCCCTCTTCTTCTTCTAGCTCAACATTATAATTTTTCGAA\n-TCTGAACTCGAATCAGAATCAGATGTGAGTCAAATATTTTTGTCTGATGGATCAGGTTTA\n-AGACTAGACTGTATTTCAAAAGACTTATTACCTGCCTTCGGAAGTGGTTTTTTTCCTATT\n-TTTTTCTCTCTCTTTCTTTTAAACATATTGTTGATAATAGTGGGTCGAGGAATCAATAGC\n-TCTGTGGAAAATATCATCATCGTATTGATCAAACTATTTTTCCTTGCATGTGATAATCGG\n-TCCTTTTGCTTCAGGATTTATTCCGGGCTTCATAGCATTTCGCCTAGGCATCAAATTAGA\n-CAACGCCGAATTATTGATTTGATAGCCGTGGACCAATTACTTTATGGATCGTTAGTGACA\n-TAGGATACCATGGATACGTTTACATATATATAATTGAAAAGTTATATCGCAAAAGAACGA\n-AATTTGTCGGAATTTATAAAATAGTTGGATGATATTGCTATTAAAATAATGTGAAACTTT\n-TTTTCCAAAGATTTTCGTTAAAGCTGGTTATCGACGAGAATTTGGTACTTGCAGCTCTTC\n-TTGCCGTATTACCATCATTGCTATTACCGCTGCCATTCTGCTTCGGCATGCTTACTCGAA\n-GGCCCATTTCTCTCCACATTTCCTCCTGGATATATTTTTTCGAATACTCATTTTTTTAAC\n-CTTGTCCTCTCCTTTTATATGCCACTTTTTTTATCTCAGCTCTGTATGATACGTTTTAAA\n-ACAAATTCAAAAAAACGGATCAGGCATGTAAATCGGACTTACCCCAAATTGTAAAGCAGC\n-ACTTTTGGTACAAAAGGTTTCTGAACTAAAATTTGAAATTTTCAACATTTGTGTTGGGCT\n-GACTCCACAGATCGGACAACGTGGAGTAGATTTACAGTGTCTGTTAATACGTTTAGGACT\n-TTTCCATCTATAAGTGTCATGTGCATTTCATAGCTAAATTCTATGTCACGATTTTCATCA\n-TGTTAAGTGAATGGCGTAAGATTTTTTTTTAATTTGATTATCTAACTGATTTTTCCATCA\n-TTATGTGGACAGCAGTTTCCTTTATCAACTCAATTTTAGGAGTCTGCAAAATCCAGATGG\n-ACTGCGGTGCTCTGTTTATCCAGATATGCCGATTAAACGAATCTATAATTTATGGGTATG\n-ACAGAAGTTACAAATAAAGATTGATCAGAAATTGGTGTGCCAAGTGCTTCCAGTTTCATA\n-TTTCTGCTTGTAAGCACTATGACCAGTTGTCCCATCAAATCCGTAGCTGCAAATTAATTT\n-GATTTAAAGATATCTGGAAATTCGCCGAATACATCAGATTGCAGCAATTAATCTTTGCGC\n-TTGTATGATCAAAGAGATTTTGTAATAGCACTTGAGCAGTGTTTCCATTACTTCACCCTC\n-TGGTCGGCACTGTAATTTAGCTTCGATCACTTCATTATACGGCGGATATATATCGCCGTT\n-ATGGCTGTTAAAAGCCTGGTGCTTATATATTGCTGTTTTGTCAGCGTGTTTTCCAGGAGA\n-TAAGCTAGAGCTGTCTGGTGAAAGAGTTGGTTTTGGCATTGAACATCCTCGATTCGCTTG\n-GAAATTCTGGTGTTTTAAAGTTTCTTTAAGAACAAAGGCAACGTCCTCTTGCATTCTTTT\n-CTAGCAGACGCAGTTGCTGCATGAATCAAAAGACTTGTGTCGTGGTCACTTTCACTTGCC\n-AGATTCGATGCCAGTTTCCTTTTAATCTTTCTCCTGCATTTTGGTAAGATAAGTTTCGGC\n-GTCCCATTTGCTGGGGTATATTGGAGTTTTCAAAATCACTAATCACTTTTCTAGTAGAAA\n-ATAATTGCTTCAGAGGACGATATATTGACGCATAAAAGAAATTTAGGCTTTATGCCACGG\n-ATGTCTGGACCACAGTGCGCTGCTACGCTACGCTTGGTGCCCAACAAGACATCAGATTAG\n-TTCATTTCGACCCATATAATTGAAGATAAGGATAGTAGTTCGATGCATTTTCCTAAACTA\n-ATCCGTAAACTAAAAATTACGTTATTTACGTTAAAGAAATCTCTTATTGAGTAATTTTTG\n-CTTGTCCACGACAAAATAAAGGAAAAAATAATTAAGATAGGAATGCAAATGTTGGTATTT\n-AAGTTTACATTACTACTTTTGTTTGTTTGGCTTACTTTACATTAGAATTATGTATGATTA\n-ATTGATATTTAAACTATAAAATTCTTTAAATTAAGAGACCTAGATATACGATTCATTAAG\n-GCAAGGTATTTTTAGCACACTAGTTTAGGAATATCTGACTTTATATATGCACGTGTGTTA\n-TTATTATTTTGTTTGTTCACGCTATGCCGTACTTACGCACTTTCCATCGATGTCAGCAGG\n-CCTGAATGCGATGATGATCTGCTGTATAGTATTAATATATAAATTGGGAGAAAATCACAT\n-ATATGTGTTTGTCAGATCTCCCACAGAGTTAAAGCTAGAATTAGAATCGTAGAGGTTTAT\n-AGTAAATATTTTTTGAGGCAAAATTAACACATATATGAAGAAACTATTCCAAGATACTCA\n-AGACTGGACACGATCATTCGTGTTGTGGCTACTTCAGGTTCGCAGCATACGCAGCTGGCG\n-CAAGAACTCAGCAAACCAGCTCTGCGATCTTCACTTGGTTAGCAGAAGAAAGGACAAGCC\n-AACACCGCTGCACGCGGTGGGTGCTCTGATGCAAGCAGTTGTGAGATCTTTCTGCGATCG\n-ATGAAGCCACCGTAAATTTTACACGTGGTCAAAGTTAGGGCGAAGAACAATGCCGATGCA\n-ACTAAGACTTCTACTTCACGATTTAAACTATCACTTGGCGGTATTTGCCTTGAAAAGCTC\n-TTATCTGGTCTACACGATGCTCGTGGATTTATAATCAGGGACTTTGCATCCGATTAAACT\n-GCCTCGATCACGCCTTCCGAAAGAGAGCGGTGGTATGCAAATCAAGTGTAATGACCGTAG\n-TTTGCTGACAATCCAGAGCTCAGGAATTTTTGTGGTACATTTTATATTCAGTTTTGCCAG\n-GATTTGGATTTGGCTATAATGGTTTGTTACCAAATGAGTGCGATAGCGCACATATAAGGT\n-GCCATTTTGGCTCGACTCCACGACCTCCTCCGGTCGAGGTCGTAGCTGAAGCTACCTGGC\n-TCAGTAACTTCTCTAAAGGGTCAGCTAGCATGTCTACGATGCTGTGCACCCAGGCACTAC\n-TATGTTTGGAGGGACTTGGGTACAGCAGCCTCCACTGGCCCCTACCTGTTTCGCCAGCGG\n-CTACGTCTCTTCGATGAGCAGTGCAACAAATCGATTGGTATTTGACTGCGGCTACTCAGT\n-ATCGCTGACCTCATCGACTTTGTGCCAGTTTAACCGTCTTTCTTATGGGGCACGGTGAAC\n-TGTATAATTTCGCCGGCCTCTAGGGATTCGTTGTCCTTACATTATCTCTTTCAATTTCAT\n-TGGAGCTGGAGGTGGAGCTGCCAATGGCCGATATATTTCATGGAATTTTCGAGTACCTTA\n-TGTGCTGGATTTCGATGATGTGGGTGCGGCGGGTGGCGGCTCCTTACGCTTCCTATGGAT'..b'TTCACCGGCAGACCGAGTGACTT\n+CGCCAGCAGACCCGCCGTCAAATCGCCGAAGTTTCCGCTTGGCAACCGGAGACAACCAGC\n+TGGTTCGCGGCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCA\n+GCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAACCCTAGCGCCACTTTCAGTTCTT\n+CATCATCAAACGCCTGCTTCACCAGCGCCTGCAGGCATCGAAATCGCCGTCGATGGCAAC\n+AGTTTCGATATTGCCGCCCAATGTACAGAACAGTTTTTCTTGCAGTGGACTGATTTTGCC\n+TCGTGGATAGAGGATAACCACTTTCACATTCGGTAAACCGTAGAAAGCAGAGCCACTGCC\n+GCTCCGGTATCACCGGAGGTCGCGGTCAGAATGGTCACTGGCTTATCACCCGCAATATGG\n+GGTCAGCATTTGTGCCATAAAGCGACCCCGAAATCTTTAAATGCCAGCGTTGGCCCGTGG\n+AACAATTCCAGACAACCGACATCGCTTTCAACATTGGCGACCGGAGCCGGGAAGGCAAAC\n+GCCGCGCGCACGCGCTCTTCCAGGATTTCCTGTGGGATTTTCATCACCAATAAACGCCGA\n+GAGGATCTTCGCTCTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAG\n+GCTTGAATTCCGGCAGGTCGTGCGGAAAAAACAGCCCCTGATTTTTGCCAACCCCTGGGT\n+TACGGCTTGCGCAAAGCTGACCTGCTCGTTGTGATCTTTCAGATTGTAGAGTTTCATTTA\n+TATTTCCAGTACTCGTGCGCCCGCCGTATCCAGCCGGCAAATATGAACAAAACCTTCCTG\n+ATTTTGCAGGTAGTTTTACCCAACCAGTCGGCAACGCGCTGGGCGGTTTCCGGCTTGTCA\n+CACAGAGCGAACAAGGTCCGGGCCGGAGCCGGAGATACCGCTCGCTACCGCGCCGATTTC\n+CGCGACCGCCCTGCCGCGCCTGCCGGAAGCCTGGCAGTAACCGTTCACGGTAGGGTTCAG\n+CGATAACATCTTTACATCAGCTTTCGCGGCAAGCTCAGGCTGACGGGAATAGCAGGGCGT\n+GAATGAAGCCTGCCAGATGTCGCCCGTGCGCAATGCAAATCCTGGCGGCGATACTGCGCC\n+GGTAAAATAGCCCTGGCTTCCTGCCTCGAGACTTTAATCCCCCGGATACGCCAGCACCCA\n+CAGCCACTCATCAAACCCTGGCACATGGCTGGCATGATGATTGGTTTTCTTCGATCATCA\n+ACTGCATACCACCGAGAAAACACGGTGCCACGTTGTCGTAATGAATGCTGCCGGAGATAC\n+GGCCTTCCAGCTCGCCCATCAAAGGCCAGCAAACGAGTGTCATTAAGCGGCTTGCCGCAG\n+TGTTCAATTTCATCGCCCATCAGCGCCGAGACCACCGAACAGGCACTGGAGCCTAAGCCC\n+AAACCGATCGGCATATTCTTTTCCAGGGTCATCGCCACTGGAATTTGCTTACCCAGTTCC\n+TGGCAAAAACGCTCCCAGCACTGATAAACGATATTTTCCCGTGGTTCTGACGAGCCTTAT\n+CGGCAAAGCGTCCGAGGTTGTTGAGACTGAATGTCTCTGCCGCCTCAACCGTGACTACAT\n+CTCCGAGCAATGCACCATCAACAGGTGTCACCGCCGCCCCGAGCACACAAACCCGACGCT\n+CATATTGGCACTGGAAGCCGGGGCATAAACTTTAACCATGTCAGACTCCTAACTTCCATG\n+AGAGGGTACGTAGCAGATCAGCAAAGACACCGGCAGCTGTAACGTCAATTTGCCCGCACC\n+AATATCCGCGCAGTACCAACGGCAAGCGGCTGATAATAGTGGCTATAGAAGGCCCAGGGC\n+GTTTTCGCCATTTTTCACTTTGAACAGCGGATCATTACCATCCACTTCGGGCAATCTTCA\n+CGCGGCAGACGCCATCTTCATCAATATTGCCAACATAGCGCAAAACTTTCCTTCATCACG\n+GGCCTTCGCCACGCGGCGGCAAAGAGATCGTCGAGTTGTGACAGATTCGCCATAAAAGCG\n+GCAACATCACCCTCGGCGTTAACCTCTGCGGGCAGCACAGGTTCAATTTCAATATCCGCC\n+AGCTCCAGTTCAGGCCCGTTTCACGAGCGAGAATCAATAGTTTACGGCCACATCCATACC\n+AGAAAGATCATCTCGCGGGTCCGGTTCGGTATAAACCCATTTCCCGCCGCCAGCGTGGTC\n+GCCTCGGAGAACTCATGCCTTCGTCTAAACTTGCCGAAGATATAAGAAAGCGAACCAGAC\n+AAGAATGCCGGAGAACTTCATCAATTCTCACCTGCATTGAGCAGATTTTGAAGGTTCTCA\n+ATAACCGGTAATCCAGCCCCAAACGTTGGTGTCATAGAGGAATTTTACGCCGCGATTTTC\n+CGCCCGCATAACGCAACTGATGGTAGTAATCCATCGACGAGGTGTTGGGCCTTTTTGTCG\n+GCGTGACAACGTGGAAACCTTCGCGCAGGAAGTCGGCATATTGATCCGCCACTGCCTGGC\n+TGGAAGTGCAGTCAACAATGACCGGTTTCAGCAGAATGATATTCTTTTCACGAGGCGAAA\n+TTAAGCGCCCGAAATAAACGGCTCTTGGCTTGCGGCCAGTTCTTCCTGCCAGTTTTCCAG\n+ATTAAGCCATTGTACATGGTGAGCAGAGCCTTCCGAGTTGGCAACACCGCAGAAACGTAA\n+GTCGATATGTTTATTCTCAGCCCAGCTTTGCTGACGCTTCAGTTGCTCCAGCAGCGCACC\n+GCCAACGCCACCGACGCCAATCACAACACTTCGATAACCTGATCGGTATTGGAACAGGCA\n+TCTGATAGTAACGCGCCACGCCAGTGGTCGCATCATCGTTATTTACCACGACGAGATTGA\n+GCGTTCAGAAAGATCCCTGAGCAATGGCGACAATTTGATATTTGGCGCGGCCAGGCGGCA\n+AAGAATCTTCGCCGAGATCCCACCCAAGGTAGCGCATACCATCACCTACCCCCAGATAAA\n+TGGCCAGCCGTTCCGTCACTGCCAGCGGCTCCCGTTAAGCCTTCTTTCAGTTCCAGGTAG\n+AACCTTTCCTGCATTGCCCGTTCAGCTCGCACACAGTTCGCTTTGTGGAACGCAGAAACT\n+GAATGGTGTATTCGGAAAGATGATTGCGTAATCAGCACACGGAAATACGGGCGCGTGACA\n+TCGCCTGCAAAGCGCGCGCCGCCATGCCGACCATCCCTTTCATCCCCGGACCAGAAACGC\n+TGAACATGCCATGTTATTCAGATTGGAAATGGCTCCTTGACCGGTAATTCGTCTTCACAC\n+GGCTGGCCACCAATTGAGCGTACCTGGTGCTTCGAGGATTTCCGGTATTTTTAATCAGGC\n+AAGGGATCTGGAACTGGGCGATGGGGGGTATGGTGCGGGGGTGAAGAACTTTAGCGCCGA\n+AAGTAGGAAACTCCATCGCTTCCTGGTAAGGAAATCGACTTCAACAACCTCGCATCGGGG\n+CACCTGACGCGGGTCGCAGGTATAGCCCCCGTCAACGTCCTCCAAATCTCGCAACAATCG\n+GGGCGTAAACAGGCAGCCAGCACCGCAGCAGAAGTAGTCGGAACCGTTGCGTCCAAGCAC\n+CAACCGTTCGCCTTTTTCATTACCGGCGGTGGAACCTGCCATCAGCACCATGTGATCAGC\n+CGGAATGCGGGCCTTGCCGCAATAGGCGGGTGGACTCAGGAATCGACGGTAGTTCGAGGT\n+AATGCCCCACTGCCAGCAGTTTTCCGACCGGATCCGATAACCAGTAACGTTGTGACCGCG\n+CGCGTCTAATAACGCTCGGCCATAATGGGAGCGACCTATTTTCCTCGCCACGGCCAAAAT\n+CAGCC\n' |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result1_assembly_graph.dot --- a/test-data/result1_assembly_graph.dot Mon Jun 21 08:37:37 2021 +0000 +++ b/test-data/result1_assembly_graph.dot Wed Jun 30 20:02:51 2021 +0000 |
| [ |
| @@ -5,6 +5,6 @@ "1" [style = "filled", fillcolor = "grey"]; "2" [style = "filled", fillcolor = "grey"]; "3" [style = "filled", fillcolor = "grey"]; -"0" -> "2" [label = "id 1\l39k 27x", color = "black"] ; -"1" -> "3" [label = "id -1\l39k 27x", color = "black"] ; +"1" -> "3" [label = "id 1\l418k 15x", color = "black"] ; +"2" -> "0" [label = "id -1\l418k 15x", color = "black"] ; } |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result1_assembly_graph.gfa --- a/test-data/result1_assembly_graph.gfa Mon Jun 21 08:37:37 2021 +0000 +++ b/test-data/result1_assembly_graph.gfa Wed Jun 30 20:02:51 2021 +0000 |
| b |
| b'@@ -1,2 +1,2 @@\n H\tVN:Z:1.0\n-S\tedge_1\tTTCGTTATTACTTCGTTCAGTTACGTATTGCTCGATTTTTTGGCATAAAGTCTAAAATTGAGCTACAGACTGAAACTTTGTACATTTTGTTTTTCAAACCACAAATAGTTTGCACACACAAAATTTGAAATCTGTGCGACCACTACTCCCTCTCTTGCCTCCCATATTAACTACTGGTATGACTCAGGATTCAACGAAATTTCATTTTTTTTTTTTTTTTTTTAAATAGAGATGTGTACATTATTGTTTTAAAAATAATCGCCCTCTTCTTCTTCTAGCTCAACATTATAATTTTTCGAATCTGAACTCGAATCAGAATCAGATGTGAGTCAAATATTTTTGTCTGATGGATCAGGTTTAAGACTAGACTGTATTTCAAAAGACTTATTACCTGCCTTCGGAAGTGGTTTTTTTCCTATTTTTTTCTCTCTCTTTCTTTTAAACATATTGTTGATAATAGTGGGTCGAGGAATCAATAGCTCTGTGGAAAATATCATCATCGTATTGATCAAACTATTTTTCCTTGCATGTGATAATCGGTCCTTTTGCTTCAGGATTTATTCCGGGCTTCATAGCATTTCGCCTAGGCATCAAATTAGACAACGCCGAATTATTGATTTGATAGCCGTGGACCAATTACTTTATGGATCGTTAGTGACATAGGATACCATGGATACGTTTACATATATATAATTGAAAAGTTATATCGCAAAAGAACGAAATTTGTCGGAATTTATAAAATAGTTGGATGATATTGCTATTAAAATAATGTGAAACTTTTTTTCCAAAGATTTTCGTTAAAGCTGGTTATCGACGAGAATTTGGTACTTGCAGCTCTTCTTGCCGTATTACCATCATTGCTATTACCGCTGCCATTCTGCTTCGGCATGCTTACTCGAAGGCCCATTTCTCTCCACATTTCCTCCTGGATATATTTTTTCGAATACTCATTTTTTTAACCTTGTCCTCTCCTTTTATATGCCACTTTTTTTATCTCAGCTCTGTATGATACGTTTTAAAACAAATTCAAAAAAACGGATCAGGCATGTAAATCGGACTTACCCCAAATTGTAAAGCAGCACTTTTGGTACAAAAGGTTTCTGAACTAAAATTTGAAATTTTCAACATTTGTGTTGGGCTGACTCCACAGATCGGACAACGTGGAGTAGATTTACAGTGTCTGTTAATACGTTTAGGACTTTTCCATCTATAAGTGTCATGTGCATTTCATAGCTAAATTCTATGTCACGATTTTCATCATGTTAAGTGAATGGCGTAAGATTTTTTTTTAATTTGATTATCTAACTGATTTTTCCATCATTATGTGGACAGCAGTTTCCTTTATCAACTCAATTTTAGGAGTCTGCAAAATCCAGATGGACTGCGGTGCTCTGTTTATCCAGATATGCCGATTAAACGAATCTATAATTTATGGGTATGACAGAAGTTACAAATAAAGATTGATCAGAAATTGGTGTGCCAAGTGCTTCCAGTTTCATATTTCTGCTTGTAAGCACTATGACCAGTTGTCCCATCAAATCCGTAGCTGCAAATTAATTTGATTTAAAGATATCTGGAAATTCGCCGAATACATCAGATTGCAGCAATTAATCTTTGCGCTTGTATGATCAAAGAGATTTTGTAATAGCACTTGAGCAGTGTTTCCATTACTTCACCCTCTGGTCGGCACTGTAATTTAGCTTCGATCACTTCATTATACGGCGGATATATATCGCCGTTATGGCTGTTAAAAGCCTGGTGCTTATATATTGCTGTTTTGTCAGCGTGTTTTCCAGGAGATAAGCTAGAGCTGTCTGGTGAAAGAGTTGGTTTTGGCATTGAACATCCTCGATTCGCTTGGAAATTCTGGTGTTTTAAAGTTTCTTTAAGAACAAAGGCAACGTCCTCTTGCATTCTTTTCTAGCAGACGCAGTTGCTGCATGAATCAAAAGACTTGTGTCGTGGTCACTTTCACTTGCCAGATTCGATGCCAGTTTCCTTTTAATCTTTCTCCTGCATTTTGGTAAGATAAGTTTCGGCGTCCCATTTGCTGGGGTATATTGGAGTTTTCAAAATCACTAATCACTTTTCTAGTAGAAAATAATTGCTTCAGAGGACGATATATTGACGCATAAAAGAAATTTAGGCTTTATGCCACGGATGTCTGGACCACAGTGCGCTGCTACGCTACGCTTGGTGCCCAACAAGACATCAGATTAGTTCATTTCGACCCATATAATTGAAGATAAGGATAGTAGTTCGATGCATTTTCCTAAACTAATCCGTAAACTAAAAATTACGTTATTTACGTTAAAGAAATCTCTTATTGAGTAATTTTTGCTTGTCCACGACAAAATAAAGGAAAAAATAATTAAGATAGGAATGCAAATGTTGGTATTTAAGTTTACATTACTACTTTTGTTTGTTTGGCTTACTTTACATTAGAATTATGTATGATTAATTGATATTTAAACTATAAAATTCTTTAAATTAAGAGACCTAGATATACGATTCATTAAGGCAAGGTATTTTTAGCACACTAGTTTAGGAATATCTGACTTTATATATGCACGTGTGTTATTATTATTTTGTTTGTTCACGCTATGCCGTACTTACGCACTTTCCATCGATGTCAGCAGGCCTGAATGCGATGATGATCTGCTGTATAGTATTAATATATAAATTGGGAGAAAATCACATATATGTGTTTGTCAGATCTCCCACAGAGTTAAAGCTAGAATTAGAATCGTAGAGGTTTATAGTAAATATTTTTTGAGGCAAAATTAACACATATATGAAGAAACTATTCCAAGATACTCAAGACTGGACACGATCATTCGTGTTGTGGCTACTTCAGGTTCGCAGCATACGCAGCTGGCGCAAGAACTCAGCAAACCAGCTCTGCGATCTTCACTTGGTTAGCAGAAGAAAGGACAAGCCAACACCGCTGCACGCGGTGGGTGCTCTGATGCAAGCAGTTGTGAGATCTTTCTGCGATCGATGAAGCCACCGTAAATTTTACACGTGGTCAAAGTTAGGGCGAAGAACAATGCCGATGCAACTAAGACTTCTACTTCACGATTTAAACTATCACTTGGCGGTATTTGCCTTGAAAAGCTCTTATCTGGTCTACACGATGCTCGTGGATTTATAATCAGGGACTTTGCATCCGATTAAACTGCCTCGATCACGCCTTCCGAAAGAGAGCGGTGGTATGCAAATCAAGTGTAATGACCGTAGTTTGCTGACAATCCAGAGCTCAGGAATTTTTGTGGTACATTTTATATTCAGTTTTGCCAGGATTTGGATTTGGCTATAATGGTTTGTTACCAAATGAGTGCGATAGCGCACATATAAGGTGCCATTTTGGCTCGACTCCACGACCTCCTCCGGTCGAGGTCGTAGCTGAAGCTACCTGGCTCAGTAACTTCTCTAAAGGGTCAGCTAGCATGTCTACGATGCTGTGCACCCAGGCACTACTATGTTTGGAGGGACTTGGGTACAGCAGCCTCCACTGGCCCCTACCTGTTTCGCCAGCGGCTACGTCTCTTCGATGAGCAGTGCAACAAATCGATTGGTATTTGACTGCGGCTACTCAGTATCGCTGACCTCATCGACTTTGTGCCAGTTTAACCGTCTTTCTTATGGGGCACGGTGAACTGTATAATTTCGCCGGCCTCTAGGGATTCGTTGTCCTTACATTATCTCTTTCAATTTCATTGGAGCTGGAGGTGGAGCTGCCAATGGCCGATATATTTCATGGAATTTTCGAGTACCTTATGTGCTGGATTTCGATGATGTGGGTGCGGCGGGTGGCGGCTCCTTACGCTTCCTATGGATTATTTTTAGGCACAAGCGTATGCCAACGAATTTCTTCTTAGAAAGTGGACATGGCCGCTTTATCCATTTCCAGTGGAGTCTGCCATGGTAATTGCGTGCAAGAGCACGTGTCGTTTAAGTT'..b'TGTTCGGCTGACTCACGTCCATCGCGTTGGATAACGTCGCCTGAGTCGCTTTGGGTGACCACTGACCGTCGTGCAGGAAACGTGGCACGGTATCGTTCACGTTGGTCGCAGCAATAAAACGTTTCACCGGCAGACCGAGTGACTTCGCCAGCAGACCCGCCGTCAAATCGCCGAAGTTTCCGCTTGGCAACCGGAGACAACCAGCTGGTTCGCGGCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAACCCTAGCGCCACTTTCAGTTCTTCATCATCAAACGCCTGCTTCACCAGCGCCTGCAGGCATCGAAATCGCCGTCGATGGCAACAGTTTCGATATTGCCGCCCAATGTACAGAACAGTTTTTCTTGCAGTGGACTGATTTTGCCTCGTGGATAGAGGATAACCACTTTCACATTCGGTAAACCGTAGAAAGCAGAGCCACTGCCGCTCCGGTATCACCGGAGGTCGCGGTCAGAATGGTCACTGGCTTATCACCCGCAATATGGGGTCAGCATTTGTGCCATAAAGCGACCCCGAAATCTTTAAATGCCAGCGTTGGCCCGTGGAACAATTCCAGACAACCGACATCGCTTTCAACATTGGCGACCGGAGCCGGGAAGGCAAACGCCGCGCGCACGCGCTCTTCCAGGATTTCCTGTGGGATTTTCATCACCAATAAACGCCGAGAGGATCTTCGCTCTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAGGCTTGAATTCCGGCAGGTCGTGCGGAAAAAACAGCCCCTGATTTTTGCCAACCCCTGGGTTACGGCTTGCGCAAAGCTGACCTGCTCGTTGTGATCTTTCAGATTGTAGAGTTTCATTTATATTTCCAGTACTCGTGCGCCCGCCGTATCCAGCCGGCAAATATGAACAAAACCTTCCTGATTTTGCAGGTAGTTTTACCCAACCAGTCGGCAACGCGCTGGGCGGTTTCCGGCTTGTCACACAGAGCGAACAAGGTCCGGGCCGGAGCCGGAGATACCGCTCGCTACCGCGCCGATTTCCGCGACCGCCCTGCCGCGCCTGCCGGAAGCCTGGCAGTAACCGTTCACGGTAGGGTTCAGCGATAACATCTTTACATCAGCTTTCGCGGCAAGCTCAGGCTGACGGGAATAGCAGGGCGTGAATGAAGCCTGCCAGATGTCGCCCGTGCGCAATGCAAATCCTGGCGGCGATACTGCGCCGGTAAAATAGCCCTGGCTTCCTGCCTCGAGACTTTAATCCCCCGGATACGCCAGCACCCACAGCCACTCATCAAACCCTGGCACATGGCTGGCATGATGATTGGTTTTCTTCGATCATCAACTGCATACCACCGAGAAAACACGGTGCCACGTTGTCGTAATGAATGCTGCCGGAGATACGGCCTTCCAGCTCGCCCATCAAAGGCCAGCAAACGAGTGTCATTAAGCGGCTTGCCGCAGTGTTCAATTTCATCGCCCATCAGCGCCGAGACCACCGAACAGGCACTGGAGCCTAAGCCCAAACCGATCGGCATATTCTTTTCCAGGGTCATCGCCACTGGAATTTGCTTACCCAGTTCCTGGCAAAAACGCTCCCAGCACTGATAAACGATATTTTCCCGTGGTTCTGACGAGCCTTATCGGCAAAGCGTCCGAGGTTGTTGAGACTGAATGTCTCTGCCGCCTCAACCGTGACTACATCTCCGAGCAATGCACCATCAACAGGTGTCACCGCCGCCCCGAGCACACAAACCCGACGCTCATATTGGCACTGGAAGCCGGGGCATAAACTTTAACCATGTCAGACTCCTAACTTCCATGAGAGGGTACGTAGCAGATCAGCAAAGACACCGGCAGCTGTAACGTCAATTTGCCCGCACCAATATCCGCGCAGTACCAACGGCAAGCGGCTGATAATAGTGGCTATAGAAGGCCCAGGGCGTTTTCGCCATTTTTCACTTTGAACAGCGGATCATTACCATCCACTTCGGGCAATCTTCACGCGGCAGACGCCATCTTCATCAATATTGCCAACATAGCGCAAAACTTTCCTTCATCACGGGCCTTCGCCACGCGGCGGCAAAGAGATCGTCGAGTTGTGACAGATTCGCCATAAAAGCGGCAACATCACCCTCGGCGTTAACCTCTGCGGGCAGCACAGGTTCAATTTCAATATCCGCCAGCTCCAGTTCAGGCCCGTTTCACGAGCGAGAATCAATAGTTTACGGCCACATCCATACCAGAAAGATCATCTCGCGGGTCCGGTTCGGTATAAACCCATTTCCCGCCGCCAGCGTGGTCGCCTCGGAGAACTCATGCCTTCGTCTAAACTTGCCGAAGATATAAGAAAGCGAACCAGACAAGAATGCCGGAGAACTTCATCAATTCTCACCTGCATTGAGCAGATTTTGAAGGTTCTCAATAACCGGTAATCCAGCCCCAAACGTTGGTGTCATAGAGGAATTTTACGCCGCGATTTTCCGCCCGCATAACGCAACTGATGGTAGTAATCCATCGACGAGGTGTTGGGCCTTTTTGTCGGCGTGACAACGTGGAAACCTTCGCGCAGGAAGTCGGCATATTGATCCGCCACTGCCTGGCTGGAAGTGCAGTCAACAATGACCGGTTTCAGCAGAATGATATTCTTTTCACGAGGCGAAATTAAGCGCCCGAAATAAACGGCTCTTGGCTTGCGGCCAGTTCTTCCTGCCAGTTTTCCAGATTAAGCCATTGTACATGGTGAGCAGAGCCTTCCGAGTTGGCAACACCGCAGAAACGTAAGTCGATATGTTTATTCTCAGCCCAGCTTTGCTGACGCTTCAGTTGCTCCAGCAGCGCACCGCCAACGCCACCGACGCCAATCACAACACTTCGATAACCTGATCGGTATTGGAACAGGCATCTGATAGTAACGCGCCACGCCAGTGGTCGCATCATCGTTATTTACCACGACGAGATTGAGCGTTCAGAAAGATCCCTGAGCAATGGCGACAATTTGATATTTGGCGCGGCCAGGCGGCAAAGAATCTTCGCCGAGATCCCACCCAAGGTAGCGCATACCATCACCTACCCCCAGATAAATGGCCAGCCGTTCCGTCACTGCCAGCGGCTCCCGTTAAGCCTTCTTTCAGTTCCAGGTAGAACCTTTCCTGCATTGCCCGTTCAGCTCGCACACAGTTCGCTTTGTGGAACGCAGAAACTGAATGGTGTATTCGGAAAGATGATTGCGTAATCAGCACACGGAAATACGGGCGCGTGACATCGCCTGCAAAGCGCGCGCCGCCATGCCGACCATCCCTTTCATCCCCGGACCAGAAACGCTGAACATGCCATGTTATTCAGATTGGAAATGGCTCCTTGACCGGTAATTCGTCTTCACACGGCTGGCCACCAATTGAGCGTACCTGGTGCTTCGAGGATTTCCGGTATTTTTAATCAGGCAAGGGATCTGGAACTGGGCGATGGGGGGTATGGTGCGGGGGTGAAGAACTTTAGCGCCGAAAGTAGGAAACTCCATCGCTTCCTGGTAAGGAAATCGACTTCAACAACCTCGCATCGGGGCACCTGACGCGGGTCGCAGGTATAGCCCCCGTCAACGTCCTCCAAATCTCGCAACAATCGGGGCGTAAACAGGCAGCCAGCACCGCAGCAGAAGTAGTCGGAACCGTTGCGTCCAAGCACCAACCGTTCGCCTTTTTCATTACCGGCGGTGGAACCTGCCATCAGCACCATGTGATCAGCCGGAATGCGGGCCTTGCCGCAATAGGCGGGTGGACTCAGGAATCGACGGTAGTTCGAGGTAATGCCCCACTGCCAGCAGTTTTCCGACCGGATCCGATAACCAGTAACGTTGTGACCGCGCGCGTCTAATAACGCTCGGCCATAATGGGAGCGACCTATTTTCCTCGCCACGGCCAAAATCAGCC\tdp:i:15\n' |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result1_assembly_info.txt --- a/test-data/result1_assembly_info.txt Mon Jun 21 08:37:37 2021 +0000 +++ b/test-data/result1_assembly_info.txt Wed Jun 30 20:02:51 2021 +0000 |
| b |
| @@ -1,2 +1,2 @@ -#seq_name length cov. circ. repeat mult. graph_path -contig_1 39944 27 - - 1 *,1,* +#seq_name length cov. circ. repeat mult. alt_group graph_path +contig_1 418805 15 N N 1 * *,1,* |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result2_assembly.fasta --- a/test-data/result2_assembly.fasta Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,675 +0,0 @@\n->contig_1\n-TTCGTTATTACTTCGTTCAGTTACGTATTGCTCGATTTTTTGGCATAAAGTCTAAAATTG\n-AGCTACAGACTGAAACTTTGTACATTTTGTTTTTCAAACCACAAATAGTTTGCACACACA\n-AAATTTGAAATCTGTGCGACCACTACTCCCTCTCTTGCCTCCCATATTAACTACTGGTAT\n-GACTCAGGATTCAACGAAATTTCATTTTTTTTTTTTTTTTTTTAAATAGAGATGTGTACA\n-TTATTGTTTTAAAAATAATCGCCCTCTTCTTCTTCTAGCTCAACATTATAATTTTTCGAA\n-TCTGAACTCGAATCAGAATCAGATGTGAGTCAAATATTTTTGTCTGATGGATCAGGTTTA\n-AGACTAGACTGTATTTCAAAAGACTTATTACCTGCCTTCGGAAGTGGTTTTTTTCCTATT\n-TTTTTCTCTCTCTTTCTTTTAAACATATTGTTGATAATAGTGGGTCGAGGAATCAATAGC\n-TCTGTGGAAAATATCATCATCGTATTGATCAAACTATTTTTCCTTGCATGTGATAATCGG\n-TCCTTTTGCTTCAGGATTTATTCCGGGCTTCATAGCATTTCGCCTAGGCATCAAATTAGA\n-CAACGCCGAATTATTGATTTGATAGCCGTGGACCAATTACTTTATGGATCGTTAGTGACA\n-TAGGATACCATGGATACGTTTACATATATATAATTGAAAAGTTATATCGCAAAAGAACGA\n-AATTTGTCGGAATTTATAAAATAGTTGGATGATATTGCTATTAAAATAATGTGAAACTTT\n-TTTTCCAAAGATTTTCGTTAAAGCTGGTTATCGACGAGAATTTGGTACTTGCAGCTCTTC\n-TTGCCGTATTACCATCATTGCTATTACCGCTGCCATTCTGCTTCGGCATGCTTACTCGAA\n-GGCCCATTTCTCTCCACATTTCCTCCTGGATATATTTTTTCGAATACTCATTTTTTTAAC\n-CTTGTCCTCTCCTTTTATATGCCACTTTTTTTATCTCAGCTCTGTATGATACGTTTTAAA\n-ACAAATTCAAAAAAACGGATCAGGCATGTAAATCGGACTTACCCCAAATTGTAAAGCAGC\n-ACTTTTGGTACAAAAGGTTTCTGAACTAAAATTTGAAATTTTCAACATTTGTGTTGGGCT\n-GACTCCACAGATCGGACAACGTGGAGTAGATTTACAGTGTCTGTTAATACGTTTAGGACT\n-TTTCCATCTATAAGTGTCATGTGCATTTCATAGCTAAATTCTATGTCACGATTTTCATCA\n-TGTTAAGTGAATGGCGTAAGATTTTTTTTTAATTTGATTATCTAACTGATTTTTCCATCA\n-TTATGTGGACAGCAGTTTCCTTTATCAACTCAATTTTAGGAGTCTGCAAAATCCAGATGG\n-ACTGCGGTGCTCTGTTTATCCAGATATGCCGATTAAACGAATCTATAATTTATGGGTATG\n-ACAGAAGTTACAAATAAAGATTGATCAGAAATTGGTGTGCCAAGTGCTTCCAGTTTCATA\n-TTTCTGCTTGTAAGCACTATGACCAGTTGTCCCATCAAATCCGTAGCTGCAAATTAATTT\n-GATTTAAAGATATCTGGAAATTCGCCGAATACATCAGATTGCAGCAATTAATCTTTGCGC\n-TTGTATGATCAAAGAGATTTTGTAATAGCACTTGAGCAGTGTTTCCATTACTTCACCCTC\n-TGGTCGGCACTGTAATTTAGCTTCGATCACTTCATTATACGGCGGATATATATCGCCGTT\n-ATGGCTGTTAAAAGCCTGGTGCTTATATATTGCTGTTTTGTCAGCGTGTTTTCCAGGAGA\n-TAAGCTAGAGCTGTCTGGTGAAAGAGTTGGTTTTGGCATTGAACATCCTCGATTCGCTTG\n-GAAATTCTGGTGTTTTTAAAGTTTCTTTAAGAACAAAGGCAACGTCCTCTTGCATTCTTT\n-TCTAGCAGACGCAGTTGCTGCATGAATCAAAAGACTTGTGTCGTGGTCACTTTTCACTTG\n-CCAGATTCGATGCCAGTTTCCTTTTTAATCTTTCTCCTGCATTTTTGGTAAGATAAGTTT\n-CGGCGTCCCATTTGCTGGGGGTATATTGGAGTTTTCAAAATCACTAATCACTTTTCTGTA\n-GAAAATAATTGCTTCAGAGGACGATATATTGACGCATAAAAGAAATTTAGGCTTTATGCC\n-ACGGATGTCTGGACCACAGTGCGCTGCTTTACGCTACGCTTGGGTGCCCAACAAGACATC\n-AGATTAGTTCATTTTTCGACCCCATATAATTGAAGATAAAGGATAGTGTTCGATGCATTT\n-TCCTAAACTAATCCGTAAACTAAAAATTACGTTATTTACGTTAAAGAAATCTCTTATTGA\n-GGTAATTTTTTGCTTGTCCACGACAAAATAAAGGAAAAAAATAATTAAGATAGGAATGCA\n-AATGTTGGTATTTAAGTTTACATTACTACTTTTTGTTTGTTTTGGCTTACTTTACATTAG\n-AATTATGTATGATTAATTGATATTTAAACTATAAAAATTCTTTAAATTAAAAGAGACCTA\n-GATATACGATTCATTAAGGCAAGGTATTTTTAGCACACTGTAGGAATATCTGACTTTATA\n-TATGCACGTGTGTTATTATTATTTTTGTTTGTTCACGCTATGCCGTACTTACGCACTTTC\n-CATCGATGTCAGCAGGCCTGAATGCTGGTGATGATCTGCTGTATAGTATTAATATATAAA\n-TTGGGAGAAAATCACATATATGTGTTTGTCAGATCTCCCACAGAGTTAAAAGCTAGAATT\n-AGAATCGTAGAGGTTTATAAGTAAATATGAGGCAAAATTAACACATATATGAAGAAACTA\n-TTCCAAAAGATACTCAAGACTGGACACGATCATTCGTGTTGTGGCTACTTCAGGTTCGCA\n-GCATACGCAGCTGGCGGCAAGAACTCAGCAAACCAGCTCTGCGATCTTCACTTGGTTAGC\n-AGAAGAAAGGACAAGCCCAACACCGCTGCACGCGGTGGGTGCTCTGATGCAAGCAGTTGT\n-GAGATCTTTCTGCGATCGATGAAAGCCACCGTAAAATTTTACACGTGGTCAAAGTTAAGG\n-GCGAAGAACAATGCCGATGCAACTAAGACTTCTACTTCACGATTTAAACTATCACTTGGC\n-GGTATTTGCCTTGAAAAAGCTCTTATCCTGGTCTACACGATGCTCGTGGATTTATAATCA\n-GGGGACTTTGCATCCGATTAAACTGCCCTCGATCACGCCTTCCCGAAAAGAGAGCGGTGG\n-TATGCAAAATCAAGTGTAATGACCGTAGTTTGCTGACAATCCAGAGCTCAGGGAATTTTT\n-GGTGCATTTTATATTCAGTTTTGCCCAGGATTTGGATTTGGCTATAATGGTTTGTTACCA\n-AATGAGTGCGATAGCGCACATATAAGGTGCCATTTTGGCTCGACTCCCACGACCTCCTCC\n-GGTCGAGGTCGTAAGCTGAAAGCTACCTGGCTCAGTAACTTCTCTAAAAGGGTCAAGCTA\n-GCATGTCTACGATGCTGTGCACCCAGGCACTACTATGTTTGGAGGGACTTTGGGTACAGC\n-AGCCTCCACTGGCTACCTGGTTTCGCCAGCGGCTACGTCCTCTTCGATGAGGCAGTGCAA\n-CAAATCGATTGGTATTTGACTGCGGCTACTCAGTATCGCTGACCTCATCGACTTTGGCGG\n-TTTAACCGTCTTTCTTATGGGGCACGGTGAACTGTATAATTTCGCCGGCCTCTAGGGATT\n-CGTTGTCCTTACATTATCTCTTTCAATTTCATTTGGAGCTGGAGGTGGAGCTGCCAATGG\n-CCGATATATTTTCATGGAATTTTCGAGTACCTTATGTGCTTTGGATTTCCGATGATGTGG\n-G'..b'TGGAGCGTCGTGGTCAGTTCTGGCGAGCGATGCGGCGATCCTGATGGGACT\n-TCGCTCCCGCCCTTTGGGCCGGCACGCTGATGAAATCCATTGTCTTCAGGCTTGTGGCTG\n-TCGTGGAGACTGTAGTGGCCAGAGTCTCCACCTCCACAGCTGCACTGCAGTCGCTAGCTT\n-TCGGCGGCGGGGGGGGCCTGCTTGCTCACCTCCCACTCCCTGGATTGGGGTTCCGACTCC\n-TCTTATGGGGATCTCGATAGCCTACCACTCCTCCTAAACGGGTCGTTGGGGTCGGGGGAG\n-CACTGCTCCCCTGTGCTGTCCATCAGATATAAAGGGGGGACTTTGGCTTGTTGGTCCCCA\n-GCGCTCCGTGGGAAATAGAACTAGCTTCAGTTCTTAGGTTATATTTAAAATTTTTTGTTC\n-AACTTAATTAGTTCAAATTTGAATTTGAATTCGAATTTCGCGCCCAACGAGCGCGCGGCC\n-GAATGACGATCGCACCGCTGATCTGGCAACGCCAGTCTTACCAGCTCGTCGACTGCGAAG\n-GTTGGCAATGCTATCAGCTGTATTGTCTGATGCAGCTGATCTGATTTATTACCAGTTTAC\n-TGGATCACTCGTGAATTCGGAACGACACCGTGACGCTCAGAAACGCGGCGCAAACCCCAG\n-AGTGGATTTGCGGGTTTATGTTGCAGTTTACGGCTGACCGGACTCGTATATGACGAAATT\n-CGCGCAGCGCAGCAAAAGACGTGCGAAATACGCGGGAACTCGATTCACTATCATGCCATA\n-ATGTGTGTTGGTATTAGTGTGTGTGTGGAGTGAAGTAAGTCTCCAAAGTGTGTTTGATTG\n-CGGGTAGACTTGGGTTCTACGCATTATTGCAACGTTCGTTCTGCACATTAAGTTTTGATC\n-GCCGAAGAAGACAGACATGCCTCGCTCCCGAATTAAACGCGTCAGAAAACGTTACGACGA\n-CGGGGTAGAGAGTGATGCTGAGTATAAAAGTGATTCAGATCCCACATACTTAATGCAAAT\n-AAGTTTATTTTCAACTTTTTCTATTGTAAAATGATATTTTATGTCTATGTGCTTAATTCT\n-CTTGTGGCAAGTTGGGTTATTTGCAATACTAATGCAACCTGGACCTTTTAATTCTAGTTT\n-AATTTCTACCAATAAAAGAAACTTGAGCCATAAGGCTTCTCTAAAACCTTCAAATAAGGC\n-CATGTAATCTGTCTTCGGTGGATGAAGCTGCAACTGATTTTTGCTTCATTGTGTTCCATG\n-AAATTAAACAACTTTCAAACAGTTTAAATAAATATCCAGTAGTACTTCGTCTGTCTGTCT\n-CATTTCCTGCCCAATCAGAATCAGCATGTCCAATAAGAATAATACTAAACTGTACACTTT\n-TATTTCTCAATCTCAAATCAACAGTTCCTTTTTGAAAATGCCTTAAAACTCTTTTTAAGG\n-CATAGCCATAATTCCTTATTGTTGTTATTCGAATATATCGACTTAAAATACTTATTGATC\n-AAGTTTCTACATGGTGCCTCACATGATTCTACAGATTAGTAGAGCCTCATAGTTTAGTTT\n-GCTTGGAAGAGGTGTACTAACTGCATTACAGTCTTCCATATTAAACTTTTCAACACATTC\n-TTTATATATGCAGATTAACTTTGAGACATATCTGACTTTTATTTCTATCAATTTTAATTC\n-CGATAAAATATCGAACTTCCTTCAAATAAGTCATTTTAAATTTATTTAGAAGGTATGATT\n-TAAATTTAGACCTAGTTTCGGATTTACTAGTGGCAATTATTACATCGTCCACATATAACA\n-AAATATAGATATTATCTAAGAATTTTCCTTTATCTAATATAATATTAGATTTTCAAATAC\n-AACATCTTTTCGCACATTTTTCAAAAACTTCAAACCAGCATCTTGCAGCTTGTTTTACTG\n-CCATATTTTGCTTTATTAAGCTTTGCATTCTGCATTCTCATCGCAATATGGCAACCCTTT\n-TGGAACAACTTCATGTAGATTTCATCTTGCTCCAAGAATGCTGTTCTCACATCCATATGA\n-TGGACTTGTAAATTTTATTGATTTGAAAGAGCCAAAAAACCGAAAACTGGAAATTCGTGC\n-AGCTGGTGCAAATGTCTCATCATAATCAGTCACATATTCTTGTGTAAAACCTCGTGCTAC\n-TAGCCGATGCTTTATGCTACTAAGTTTCCAAACTCATCTTGTTAGTGCTACTAAAAACCC\n-ATTTACAATCTACTATGCTTTTATTATTAGGCTTCTGCACCAAACTCCACGTTTTATTTT\n-CTCTGAATGTGAACCAAGTTCATCTTGTATAGCTTTTTCCCCAAAAGATCTGTCATCCAC\n-GAAATTCAATTTCATCAAATCTATTGGGAATATCAATATCATACGATAGTTTAGGTTTAT\n-CTTTGTCCAAGTTACGGGGTTGGACTGTCACCCGCCTCCGCTCCCTTTTACGCTCTCCGC\n-TCTTCACCACAGAGTCTCCCAAGGAGTCTCCGCTGCGCTTGGAAGAGCCTAACTAGATAG\n-AATAAGCACCAGTGTCAAAACCATTTCGCAGAATAAATATACGCCCGGTCGCGCCAATCA\n-ATTACGAAAGTCTAGTGTTCGCTTTTTCTTCGAGTTTCTTTTCAGCATATTTGGAAAATT\n-CCAGGACAAGCACCCTACAACCCATCATTTTTTATTTCTTTCACTGCGTCCTGATTTCTT\n-ACTCACTTTTGCTATCATTTTATTTCATCACCAGTTTCTTTAACTGGATCGGCATTCTTT\n-AGACATGTGGAATTTTTACTATGTTGTACATTTTTTCTAGAATCAACAGATTCATCATTT\n-TCCACCATTGGAAAATCGAGGACTCTACATTATCTTTATTAAAGAATCATAAATACTTTT\n-ATGTTGAACCTTCGAGTCTTCTTCATGTTTTAATTCGTTTGTCATCTCGATCACCAGAAT\n-CGTATCTCGCTTTCAAGGCCTCATCTCTTTTTAGACGCTGCTCATTTCTTAAGAACTGAG\n-CCAACTGCGCAGACCTAGAATGCCTAGCCCGGAACCGATATGTTCGGGGTCGCTTGAAAA\n-GGCAGAGTAACGACATATTTGCTCGCACTCCGTTTCTCGTGAGTCGTTTGAAGAGAATTC\n-TTCTCGCACGGAGATCGGATTCTTTTGCAGCTTTGTTGGTATATGTCCCTCGCAGAACTG\n-CTGAGGGAGTTTGTCCAGTGAATTATCGTACGCGTGGGAGATCTGCGTCGAAAAGAGAAA\n-CTTCTAACGGGCTGCTGACACTGGCCCAGTTAGTACCCAGCCGAAAGTATGGTCTCTTGC\n-CCGCCCCAAGAGAGAGCGCAGATGTTGGTTTTGCCCTCCAGAGCACCGAAGGGAGGATTG\n-CCAAATCCATGTGCGAAGAATTTCATTGGGCCCTGAAGCGAGTGCGGCAAATATGTCGTT\n-ACTCTGCGCTTTTCGCGACCCAGTGCCTATCGGTTCCGGGCTGGGGCATTCTAGGTGCTG\n-TTTGGCTCAGTTCTTGAGCTGGCATTAAAAGATGGGCTGTGAAAGCGAGATACGATTCGG\n-TGATCAGATGACGGCGAATTAAAACGCAGAAGAAGACTCGAAGGTTCAACATGAAATATT\n-TTATGATTCTTTTAATAAAAGATAATGTAGAGTCGATTTTCCAATGGTGGAAAATGATGA\n-ATCTGTTGATTCTAGAAAAATGTACAACATGATGAAATTCCACATGTCTAAAGAATGCCG\n-ATCCAGTTAAAGAGCTGGTGATGAAATAAATGATAGCAGAAAGTGAAGTAGAAATCAGAC\n-GCAGTGAAAGAAATAAAAAAATGATGGGTTGTAGGGAATCCTGGAATTTTCAAATATGCT\n-GAAAAGAAACTCTCGAAGAAGAACACTAGACTTTTCACC\n' |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result2_assembly_graph.dot --- a/test-data/result2_assembly_graph.dot Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| @@ -1,10 +0,0 @@ -digraph { -nodesep = 0.5; -node [shape = circle, label = "", height = 0.3]; -"0" [style = "filled", fillcolor = "grey"]; -"1" [style = "filled", fillcolor = "grey"]; -"2" [style = "filled", fillcolor = "grey"]; -"3" [style = "filled", fillcolor = "grey"]; -"0" -> "2" [label = "id 1\l39k 27x", color = "black"] ; -"1" -> "3" [label = "id -1\l39k 27x", color = "black"] ; -} |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result2_assembly_graph.gfa --- a/test-data/result2_assembly_graph.gfa Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,2 +0,0 @@\n-H\tVN:Z:1.0\n-S\tedge_1\tTTCGTTATTACTTCGTTCAGTTACGTATTGCTCGATTTTTTGGCATAAAGTCTAAAATTGAGCTACAGACTGAAACTTTGTACATTTTGTTTTTCAAACCACAAATAGTTTGCACACACAAAATTTGAAATCTGTGCGACCACTACTCCCTCTCTTGCCTCCCATATTAACTACTGGTATGACTCAGGATTCAACGAAATTTCATTTTTTTTTTTTTTTTTTTAAATAGAGATGTGTACATTATTGTTTTAAAAATAATCGCCCTCTTCTTCTTCTAGCTCAACATTATAATTTTTCGAATCTGAACTCGAATCAGAATCAGATGTGAGTCAAATATTTTTGTCTGATGGATCAGGTTTAAGACTAGACTGTATTTCAAAAGACTTATTACCTGCCTTCGGAAGTGGTTTTTTTCCTATTTTTTTCTCTCTCTTTCTTTTAAACATATTGTTGATAATAGTGGGTCGAGGAATCAATAGCTCTGTGGAAAATATCATCATCGTATTGATCAAACTATTTTTCCTTGCATGTGATAATCGGTCCTTTTGCTTCAGGATTTATTCCGGGCTTCATAGCATTTCGCCTAGGCATCAAATTAGACAACGCCGAATTATTGATTTGATAGCCGTGGACCAATTACTTTATGGATCGTTAGTGACATAGGATACCATGGATACGTTTACATATATATAATTGAAAAGTTATATCGCAAAAGAACGAAATTTGTCGGAATTTATAAAATAGTTGGATGATATTGCTATTAAAATAATGTGAAACTTTTTTTCCAAAGATTTTCGTTAAAGCTGGTTATCGACGAGAATTTGGTACTTGCAGCTCTTCTTGCCGTATTACCATCATTGCTATTACCGCTGCCATTCTGCTTCGGCATGCTTACTCGAAGGCCCATTTCTCTCCACATTTCCTCCTGGATATATTTTTTCGAATACTCATTTTTTTAACCTTGTCCTCTCCTTTTATATGCCACTTTTTTTATCTCAGCTCTGTATGATACGTTTTAAAACAAATTCAAAAAAACGGATCAGGCATGTAAATCGGACTTACCCCAAATTGTAAAGCAGCACTTTTGGTACAAAAGGTTTCTGAACTAAAATTTGAAATTTTCAACATTTGTGTTGGGCTGACTCCACAGATCGGACAACGTGGAGTAGATTTACAGTGTCTGTTAATACGTTTAGGACTTTTCCATCTATAAGTGTCATGTGCATTTCATAGCTAAATTCTATGTCACGATTTTCATCATGTTAAGTGAATGGCGTAAGATTTTTTTTTAATTTGATTATCTAACTGATTTTTCCATCATTATGTGGACAGCAGTTTCCTTTATCAACTCAATTTTAGGAGTCTGCAAAATCCAGATGGACTGCGGTGCTCTGTTTATCCAGATATGCCGATTAAACGAATCTATAATTTATGGGTATGACAGAAGTTACAAATAAAGATTGATCAGAAATTGGTGTGCCAAGTGCTTCCAGTTTCATATTTCTGCTTGTAAGCACTATGACCAGTTGTCCCATCAAATCCGTAGCTGCAAATTAATTTGATTTAAAGATATCTGGAAATTCGCCGAATACATCAGATTGCAGCAATTAATCTTTGCGCTTGTATGATCAAAGAGATTTTGTAATAGCACTTGAGCAGTGTTTCCATTACTTCACCCTCTGGTCGGCACTGTAATTTAGCTTCGATCACTTCATTATACGGCGGATATATATCGCCGTTATGGCTGTTAAAAGCCTGGTGCTTATATATTGCTGTTTTGTCAGCGTGTTTTCCAGGAGATAAGCTAGAGCTGTCTGGTGAAAGAGTTGGTTTTGGCATTGAACATCCTCGATTCGCTTGGAAATTCTGGTGTTTTTAAAGTTTCTTTAAGAACAAAGGCAACGTCCTCTTGCATTCTTTTCTAGCAGACGCAGTTGCTGCATGAATCAAAAGACTTGTGTCGTGGTCACTTTTCACTTGCCAGATTCGATGCCAGTTTCCTTTTTAATCTTTCTCCTGCATTTTTGGTAAGATAAGTTTCGGCGTCCCATTTGCTGGGGGTATATTGGAGTTTTCAAAATCACTAATCACTTTTCTGTAGAAAATAATTGCTTCAGAGGACGATATATTGACGCATAAAAGAAATTTAGGCTTTATGCCACGGATGTCTGGACCACAGTGCGCTGCTTTACGCTACGCTTGGGTGCCCAACAAGACATCAGATTAGTTCATTTTTCGACCCCATATAATTGAAGATAAAGGATAGTGTTCGATGCATTTTCCTAAACTAATCCGTAAACTAAAAATTACGTTATTTACGTTAAAGAAATCTCTTATTGAGGTAATTTTTTGCTTGTCCACGACAAAATAAAGGAAAAAAATAATTAAGATAGGAATGCAAATGTTGGTATTTAAGTTTACATTACTACTTTTTGTTTGTTTTGGCTTACTTTACATTAGAATTATGTATGATTAATTGATATTTAAACTATAAAAATTCTTTAAATTAAAAGAGACCTAGATATACGATTCATTAAGGCAAGGTATTTTTAGCACACTGTAGGAATATCTGACTTTATATATGCACGTGTGTTATTATTATTTTTGTTTGTTCACGCTATGCCGTACTTACGCACTTTCCATCGATGTCAGCAGGCCTGAATGCTGGTGATGATCTGCTGTATAGTATTAATATATAAATTGGGAGAAAATCACATATATGTGTTTGTCAGATCTCCCACAGAGTTAAAAGCTAGAATTAGAATCGTAGAGGTTTATAAGTAAATATGAGGCAAAATTAACACATATATGAAGAAACTATTCCAAAAGATACTCAAGACTGGACACGATCATTCGTGTTGTGGCTACTTCAGGTTCGCAGCATACGCAGCTGGCGGCAAGAACTCAGCAAACCAGCTCTGCGATCTTCACTTGGTTAGCAGAAGAAAGGACAAGCCCAACACCGCTGCACGCGGTGGGTGCTCTGATGCAAGCAGTTGTGAGATCTTTCTGCGATCGATGAAAGCCACCGTAAAATTTTACACGTGGTCAAAGTTAAGGGCGAAGAACAATGCCGATGCAACTAAGACTTCTACTTCACGATTTAAACTATCACTTGGCGGTATTTGCCTTGAAAAAGCTCTTATCCTGGTCTACACGATGCTCGTGGATTTATAATCAGGGGACTTTGCATCCGATTAAACTGCCCTCGATCACGCCTTCCCGAAAAGAGAGCGGTGGTATGCAAAATCAAGTGTAATGACCGTAGTTTGCTGACAATCCAGAGCTCAGGGAATTTTTGGTGCATTTTATATTCAGTTTTGCCCAGGATTTGGATTTGGCTATAATGGTTTGTTACCAAATGAGTGCGATAGCGCACATATAAGGTGCCATTTTGGCTCGACTCCCACGACCTCCTCCGGTCGAGGTCGTAAGCTGAAAGCTACCTGGCTCAGTAACTTCTCTAAAAGGGTCAAGCTAGCATGTCTACGATGCTGTGCACCCAGGCACTACTATGTTTGGAGGGACTTTGGGTACAGCAGCCTCCACTGGCTACCTGGTTTCGCCAGCGGCTACGTCCTCTTCGATGAGGCAGTGCAACAAATCGATTGGTATTTGACTGCGGCTACTCAGTATCGCTGACCTCATCGACTTTGGCGGTTTAACCGTCTTTCTTATGGGGCACGGTGAACTGTATAATTTCGCCGGCCTCTAGGGATTCGTTGTCCTTACATTATCTCTTTCAATTTCATTTGGAGCTGGAGGTGGAGCTGCCAATGGCCGATATATTTTCATGGAATTTTCGAGTACCTTATGTGCTTTGGATTTCCGATGATGTGGGTGCGGCGGGTGGCGGCTCCTTACGCTTTCCTATGGATTATTTTTTAGGCACAAGCGTATGCCAACGAATTTCTTCTTAGAAAGTGGACAAAGGCCGCTTTATCCATTTCCGTGGAGTCTG'..b'GATAGGTCCACTAGCACGCCCCTATCCTCGCTGGTTACGTGACGCCTAGTCTCGAACGAGGATAGAATGGCGGTGATCTTGGCTTTCATCATGTCCAGGATGCCCTGCAGGTCCTCATTCTGGAGCGTCGTGGTCAGTTCTGGCGAGCGATGCGGCGATCCTGATGGGACTTCGCTCCCGCCCTTTGGGCCGGCACGCTGATGAAATCCATTGTCTTCAGGCTTGTGGCTGTCGTGGAGACTGTAGTGGCCAGAGTCTCCACCTCCACAGCTGCACTGCAGTCGCTAGCTTTCGGCGGCGGGGGGGGCCTGCTTGCTCACCTCCCACTCCCTGGATTGGGGTTCCGACTCCTCTTATGGGGATCTCGATAGCCTACCACTCCTCCTAAACGGGTCGTTGGGGTCGGGGGAGCACTGCTCCCCTGTGCTGTCCATCAGATATAAAGGGGGGACTTTGGCTTGTTGGTCCCCAGCGCTCCGTGGGAAATAGAACTAGCTTCAGTTCTTAGGTTATATTTAAAATTTTTTGTTCAACTTAATTAGTTCAAATTTGAATTTGAATTCGAATTTCGCGCCCAACGAGCGCGCGGCCGAATGACGATCGCACCGCTGATCTGGCAACGCCAGTCTTACCAGCTCGTCGACTGCGAAGGTTGGCAATGCTATCAGCTGTATTGTCTGATGCAGCTGATCTGATTTATTACCAGTTTACTGGATCACTCGTGAATTCGGAACGACACCGTGACGCTCAGAAACGCGGCGCAAACCCCAGAGTGGATTTGCGGGTTTATGTTGCAGTTTACGGCTGACCGGACTCGTATATGACGAAATTCGCGCAGCGCAGCAAAAGACGTGCGAAATACGCGGGAACTCGATTCACTATCATGCCATAATGTGTGTTGGTATTAGTGTGTGTGTGGAGTGAAGTAAGTCTCCAAAGTGTGTTTGATTGCGGGTAGACTTGGGTTCTACGCATTATTGCAACGTTCGTTCTGCACATTAAGTTTTGATCGCCGAAGAAGACAGACATGCCTCGCTCCCGAATTAAACGCGTCAGAAAACGTTACGACGACGGGGTAGAGAGTGATGCTGAGTATAAAAGTGATTCAGATCCCACATACTTAATGCAAATAAGTTTATTTTCAACTTTTTCTATTGTAAAATGATATTTTATGTCTATGTGCTTAATTCTCTTGTGGCAAGTTGGGTTATTTGCAATACTAATGCAACCTGGACCTTTTAATTCTAGTTTAATTTCTACCAATAAAAGAAACTTGAGCCATAAGGCTTCTCTAAAACCTTCAAATAAGGCCATGTAATCTGTCTTCGGTGGATGAAGCTGCAACTGATTTTTGCTTCATTGTGTTCCATGAAATTAAACAACTTTCAAACAGTTTAAATAAATATCCAGTAGTACTTCGTCTGTCTGTCTCATTTCCTGCCCAATCAGAATCAGCATGTCCAATAAGAATAATACTAAACTGTACACTTTTATTTCTCAATCTCAAATCAACAGTTCCTTTTTGAAAATGCCTTAAAACTCTTTTTAAGGCATAGCCATAATTCCTTATTGTTGTTATTCGAATATATCGACTTAAAATACTTATTGATCAAGTTTCTACATGGTGCCTCACATGATTCTACAGATTAGTAGAGCCTCATAGTTTAGTTTGCTTGGAAGAGGTGTACTAACTGCATTACAGTCTTCCATATTAAACTTTTCAACACATTCTTTATATATGCAGATTAACTTTGAGACATATCTGACTTTTATTTCTATCAATTTTAATTCCGATAAAATATCGAACTTCCTTCAAATAAGTCATTTTAAATTTATTTAGAAGGTATGATTTAAATTTAGACCTAGTTTCGGATTTACTAGTGGCAATTATTACATCGTCCACATATAACAAAATATAGATATTATCTAAGAATTTTCCTTTATCTAATATAATATTAGATTTTCAAATACAACATCTTTTCGCACATTTTTCAAAAACTTCAAACCAGCATCTTGCAGCTTGTTTTACTGCCATATTTTGCTTTATTAAGCTTTGCATTCTGCATTCTCATCGCAATATGGCAACCCTTTTGGAACAACTTCATGTAGATTTCATCTTGCTCCAAGAATGCTGTTCTCACATCCATATGATGGACTTGTAAATTTTATTGATTTGAAAGAGCCAAAAAACCGAAAACTGGAAATTCGTGCAGCTGGTGCAAATGTCTCATCATAATCAGTCACATATTCTTGTGTAAAACCTCGTGCTACTAGCCGATGCTTTATGCTACTAAGTTTCCAAACTCATCTTGTTAGTGCTACTAAAAACCCATTTACAATCTACTATGCTTTTATTATTAGGCTTCTGCACCAAACTCCACGTTTTATTTTCTCTGAATGTGAACCAAGTTCATCTTGTATAGCTTTTTCCCCAAAAGATCTGTCATCCACGAAATTCAATTTCATCAAATCTATTGGGAATATCAATATCATACGATAGTTTAGGTTTATCTTTGTCCAAGTTACGGGGTTGGACTGTCACCCGCCTCCGCTCCCTTTTACGCTCTCCGCTCTTCACCACAGAGTCTCCCAAGGAGTCTCCGCTGCGCTTGGAAGAGCCTAACTAGATAGAATAAGCACCAGTGTCAAAACCATTTCGCAGAATAAATATACGCCCGGTCGCGCCAATCAATTACGAAAGTCTAGTGTTCGCTTTTTCTTCGAGTTTCTTTTCAGCATATTTGGAAAATTCCAGGACAAGCACCCTACAACCCATCATTTTTTATTTCTTTCACTGCGTCCTGATTTCTTACTCACTTTTGCTATCATTTTATTTCATCACCAGTTTCTTTAACTGGATCGGCATTCTTTAGACATGTGGAATTTTTACTATGTTGTACATTTTTTCTAGAATCAACAGATTCATCATTTTCCACCATTGGAAAATCGAGGACTCTACATTATCTTTATTAAAGAATCATAAATACTTTTATGTTGAACCTTCGAGTCTTCTTCATGTTTTAATTCGTTTGTCATCTCGATCACCAGAATCGTATCTCGCTTTCAAGGCCTCATCTCTTTTTAGACGCTGCTCATTTCTTAAGAACTGAGCCAACTGCGCAGACCTAGAATGCCTAGCCCGGAACCGATATGTTCGGGGTCGCTTGAAAAGGCAGAGTAACGACATATTTGCTCGCACTCCGTTTCTCGTGAGTCGTTTGAAGAGAATTCTTCTCGCACGGAGATCGGATTCTTTTGCAGCTTTGTTGGTATATGTCCCTCGCAGAACTGCTGAGGGAGTTTGTCCAGTGAATTATCGTACGCGTGGGAGATCTGCGTCGAAAAGAGAAACTTCTAACGGGCTGCTGACACTGGCCCAGTTAGTACCCAGCCGAAAGTATGGTCTCTTGCCCGCCCCAAGAGAGAGCGCAGATGTTGGTTTTGCCCTCCAGAGCACCGAAGGGAGGATTGCCAAATCCATGTGCGAAGAATTTCATTGGGCCCTGAAGCGAGTGCGGCAAATATGTCGTTACTCTGCGCTTTTCGCGACCCAGTGCCTATCGGTTCCGGGCTGGGGCATTCTAGGTGCTGTTTGGCTCAGTTCTTGAGCTGGCATTAAAAGATGGGCTGTGAAAGCGAGATACGATTCGGTGATCAGATGACGGCGAATTAAAACGCAGAAGAAGACTCGAAGGTTCAACATGAAATATTTTATGATTCTTTTAATAAAAGATAATGTAGAGTCGATTTTCCAATGGTGGAAAATGATGAATCTGTTGATTCTAGAAAAATGTACAACATGATGAAATTCCACATGTCTAAAGAATGCCGATCCAGTTAAAGAGCTGGTGATGAAATAAATGATAGCAGAAAGTGAAGTAGAAATCAGACGCAGTGAAAGAAATAAAAAAATGATGGGTTGTAGGGAATCCTGGAATTTTCAAATATGCTGAAAAGAAACTCTCGAAGAAGAACACTAGACTTTTCACC\tdp:i:27\n' |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result2_assembly_info.txt --- a/test-data/result2_assembly_info.txt Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,2 +0,0 @@ -#seq_name length cov. circ. repeat mult. graph_path -contig_1 40419 26 - - 1 *,1,* |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result3_assembly.fasta --- a/test-data/result3_assembly.fasta Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,675 +0,0 @@\n->contig_1\n-CGGTGAAAAGTCTAGTGTTCTTCTTCGAGAGTTTCTTTTCAGCATATTTGAAAATTCCAG\n-GATTCCCTACAACCCATCATTTTTTTATTTCTTTCACTGCGTCTGATTTCTACTTCACTT\n-TCTGCTATCATTTATTTCATCACCAGCTCTTTAACTGGATCGGCATTCTTTAGACATGTG\n-GAATTTCATCATGTTGTACATTTTTCTAGAATCAACAGATTCATCATTTTCCACCATTGG\n-AAAATCGACTCTACATTATCTTTTATTAAAAGAATCATAAAATATTTCATGTTGAACCTT\n-CGAGTCTTCTTCTGCGTTTTAATTCGCCGTCATCTGATCACCGAATCGTATCTCGCTTTC\n-ACAGCCCATCTTTTAATGCCAGCTCAAGAACTGAGCCAAACAGCACCTAGAATGCCCCAG\n-CCCGGAACCGATAGGCACTGGGTCGCGAAAAGCGCAGAGTAACGACATATTTGCCGCACT\n-CGCTTCAGGGCCCAATGAAATTCTTCGCACATGGATTTGGCAATCCTCCCTTCGGTGCTC\n-TGGAGGACAAAACCAACATTGGCCTCTTTGGGGCAAGAGAGACCATTTTCGCGGTACTAA\n-CTGGGCCAGTGTCAGCCCAGCCCGTTAGAGTTGCTCTTTTCGGCACAGATCTCCCACGCG\n-TACGATAATTCACTGGACAAACTCCCTCAGCAGAAATCTGCGAGGGACATATACCAACAA\n-AGCTGCAAAAGAATCCGATCTCCGTGCGAGAAGAATTCTCTTCAAACGACTCACGAGAAA\n-CGAGTGCGCAAATATGTCGTTATTCTGCCTTTTTCGCGACCCCGAACATATCGGTTCCGG\n-GCTGGCATTCTAGGTCTGTTTCGCGTTGGCTCAGTTCTTAAGAAATGAGCAGCGTCTAAA\n-AAAGAGATGAGGCCTTGAAAGCGAGATACGATTCTGGTGATCGAGATGACAAACGAATTA\n-AAACATGAAGAAGACTCGAAGGTTCAACATAAAAGTATTTATGATTCTTTAATAAAGATA\n-ATGTAGAGTCCTCGATTTTCCAATGGTGGAAAATGATGAATCTGTTGATTCTAGAAAAAA\n-TGTACAACATAGTAAAAATTCCACATGTCTAAAGAATGCCGATCCAGTTAAAGAAACTGG\n-TGATGAAATAAAATGATAGCAAAAGTGAGTAAGAAATCAGGACGCAGTGAAAGAAATAAA\n-AAATGATGGGTTGTAGGTGCTTGTCCTGGAATTTTCCAAATATGCTGAAAAGAAACTCTC\n-GAAGAAAAAGCGAACACTAGACTTTCGTAATTGATGGCGCGACCGGGCGTATATTTACTT\n-CTGCGAAATGGTTTTGACACTGGTGCTTATTCTATCTAGTTAGGCTCTTCCAAGCGCAGC\n-GGAGACTCCTTTGGAGACTCTGTGGTGAAGAGCGGAGAGCGTAAAAGGGAGCGGAGAGCG\n-GGTGACAGTCCAACCCCGTAACTTGGACAAAGATAAACCTAAACTATCGTATATGATATT\n-GATATTCCCAATAGATTTGATGAAATTGAATTTCGTGGATGACAGATCTTTTGGGAAAAG\n-CTATACAAGATGAACTTGGTTCACATTCAGAGAAAATAAAACGTGGAGTTTGGTGCAGAA\n-GCCTAATAATAAAAGCATAGTAGATTGTAAATGGGTTTTTAGTAGCACTAACAAGATGAG\n-TTTGGAAACTTAGTAGCATAAAGCATCGGCTAGTAGCACGAGGTTTTACACAAGAATATG\n-TGACTGATTATGATGAGACATTTGCACCAGCTGCACGAATTTCCAGTTTTCGGTTTTTTG\n-GCTCTTTCAAATCAATAAAATTTACAAGTCCATCGTATGGATGTGAGAACAGCATTCTTG\n-GAGCAAGATGAAATCTACATGAAGTTGTTCCAAAAGGGTTGCCATATTGCGATGAGAATG\n-CAGAATGCAAAGCTTAATAAAGCAAAATATGGCAGTAAAACAAGCTGCAAGATGCTGGTT\n-TGAAGTTTTTGAAAATGTGCGAAAAGATGTTGTATTTGAAAATCTAATATTATATTAGAT\n-AAAGGAAAATTCTTAGATAATATCTATATTTTGTTATATGTGGACGATGTAATAATTGCC\n-ACTAGTAAATCCGAAACTAGGTCTAAATTTAAATCATACCTTCTAAATAAATTTAAAATG\n-ACTTATTTGAAGGAAGTTCGATATTTTATCGGAATTAAAATTGATAGAAATAAAAGTCAG\n-ATATGTCTCAAAGTTAATCTGCATATATAAAGAATGTGTTGAAAAGTTTAATATGGAAGA\n-CTGTAATGCAGTTAGTACACCTCTTCCAAGCAAACTAAACTATGAGGCTCTACTAATCTG\n-TAGAATCATGTGAGGCACCATGTAGAAACTTGATCAATAAGTATTTTAAGTCGATATATT\n-CGAATAACAACAATAAGGAATTATGGCTATGCCTTAAAAAGAGTTTTAAGGCATTTTCAA\n-AAAGGAACTGTTGATTTGAGATTGAGATAGTGTACAGTTTAGTATTATTCTTATTGGACA\n-TGCTGATTCTGATTGGGCAGGAAATGAGACAGACAGACGAAAGTACTACTGGATATTTAT\n-TTAAACTGTTTGAAAGTTGTTTAATTTCATGGAACACAATGAAGCAAAAATCAGTTGCAG\n-CTTCATCCACCGAAGACAGATTACATGGCCTTATTTGAAGGTTTTAGAGAAGCCTTATGG\n-CTCAAGTTTCTTTTATTGGTAGAAATTAAACTAGAATTAAAAGGTCCAGGTTGCATTAGT\n-ATTGCAAATAACCCAACTTGCCACAAGAGAATTAAGCACATAGACATAAAATATCATTTT\n-ACAATAGAAAAAGTTGAAAATAAACTTATTTGCATTAAGTATGTGGGATCTGAATCACTT\n-TTATACTCAGCATCACTCTCTACCCCGTCGTCGTAACGTTTTCTGACGCGTTTAATTCGG\n-GAGCGAGGCATGTCTGTCTTCTTCGGCGATCAAAACTTAATGTGCAGAACGAACGTTGCA\n-ATAATGCGTAGAACCCAAGTCTACCCGCAATCAAACACACTTTGGAGACTTACTTCACTC\n-CACACACACACTAATACCAACACACATTATGGCATGGATAGTGAATCGAGTTCCCGCGTA\n-TTTCGCACGTCTTTTGCTGCGCTGCGCGAATTTCGTCATATACGAGTCCGGTCAGCCGTA\n-AACTGCAACATAAACCCGCAAATCCACTCTGGGGTTTGCGCCGCGTTTCTGAGCGTCACG\n-GTGTCGTTCCGAATTCACGAGTGATCCAGTAAACTGGTAATAAATCAGATCAGCTGCATC\n-AGACAATACAGCTGATAGCATTGCCAACCTTTCGCAGTCGACGAGCTGGTAAGACTGGCG\n-TTGCCAGATCAGCGGTGCGATCGTCATTCGGCCGCGCGCTCGTTGGGCGCGAAATTCGAA\n-TTCAAATTCAAATTTGAACTAATTAAGTTGAACAAAAAATTTTAAATATAACCTAAGAAC\n-TGAAGCTAGTTCTATTTCCCACGGAGCGCTGGGGACCAACAAGCCAAAGTCCCCCCCCTT\n-TATATCTGATGGACAGCACAGGGGAGCAGTGCTCCCCGACCCCAACGACCCGTTTAGGAG\n-GAGTGGTAGGCTATCGAGATCCCCATAAGAGGAGTCGGAACCCCAATCCAGGGAGTGGGA\n-GGTGAGCAAGCAGGCCCCCCCCGCCGCCGAAAGCTAGCGACTGCAGTGCAGCTGTGGAGG\n-TGGAGACTCTGGCCACTACAGTCTCCACGACAGCCACAAGCCTGAAGACAATGGATTTCA\n-TCAGCGTGCCGGCCCAAAGGGCGGGAGCGAAGTCCCATCAGGATCGCCGCATCGCTCGCC\n-A'..b'TAGGAAAGCGTAAGGAGCCGCCACCCGCCGCACCCACATCATCGGAAATCCAAAGC\n-ACATAAGGTACTCGAAAATTCCATGAAAATATATCGGCCATTGGCAGCTCCACCTCCAGC\n-TCCAAATGAAATTGAAAGAGATAATGTAAGGACAACGAATCCCTAGAGGCCGGCGAAATT\n-ATACAGTTCACCGTGCCCCATAAGAAAGACGGTTAAACCGCCAAAGTCGATGAGGTCAGC\n-GATACTGAGTAGCCGCAGTCAAATACCAATCGATTTGTTGCACTGCCTCATCGAAGAGGA\n-CGTAGCCGCTGGCGAAACCAGGTAGCCAGTGGAGGCTGCTGTACCCAAAGTCCCTCCAAA\n-CATAGTAGTGCCTGGGTGCACTGCATCGTAGACATGCTAGCTTGACCCTTTTAGAGAAGT\n-TACTGAGCCAGGTAGCTTTCAGCTTACGTCCTCGACCGGAGGAGGCTGTGGGAGTCGAGC\n-CAAAATGGCACCTTATATGTGCGCTATCGCACTCATTTGGTAACAAACCATTATAGCCAA\n-ATCCAAATCCTGGGCAAAACTGAATATAAAATGCACCAAAAATTCCCTGAGCTCTGGATT\n-GTCAGCAAACTACGGTCATTACACTTGATTTTGCATACCACCGCTCTCTTTTCGGGAAGG\n-CGTGATCGAGGGCAGTTTAATCGGATGCAAAGTCCCCTGATTATAAATCCACGAGCATCG\n-TGTAGACCAGGATAAGAGCTTTTTCAAGGCAAATACCGCCAAGTGATAGTTTAAATCGTG\n-AAGTAGAAGTCTTAGTTGCATCGGCATTGTTCTTCGCCCTTAACTTTGACCACGTGTAAA\n-ATTTTACGGTGGCTTTCATCGATCGCAGAAAGATCTCACAACTGCTTGCATCAGAGCACC\n-CACCGCGTGCAGCGGTGTTGGGCTTGTCCTTTCTTCTGCTAACCAAGTGAAGATCGCAGA\n-GCTGGTTTGCTGAGCTCTTGCTGCCGACTGCGTATGCTGCGAACCTGAAGTAGCCACAAC\n-ACGAATGATCGTGTCCAGTCTTGAGTATCTTGGAATAGTTTCTTCATATATGTGTTAATT\n-TTGCCTCATATTTACTTATAAACCTCTACGATTCTAATTCTAGCTTTTAACTCTGTGGGA\n-GATCTGACAAACACATATATGTGATTTTCTCCCAATTTATATATTAATATCATACAGCAG\n-ATCATCACCAGCATTCAGGCCTGCTGACATCGATGGAAAGTGCGTAAGTACGGCATAGCG\n-TGAACAAACAAAAATAATAATAACACACGTGCATATATAAAGTCAGATATTCCTACAGTG\n-TGCTAAAAATACCTTGCCTTAATGAATCGTATATCTAGGTCTCTTAATTTAAAGAATTTT\n-TATAGTTTAAATATCAATTAATCATACATAATTCTAATGTAAAGTAAGCCAAAACAAACA\n-AAAAGTAGTAATGTAAACTTAAATACCAACATTTGCATTCCTATCTTAATTATTTTTTTC\n-CTTTATTTTGTCGTGGACAAGCAAAAAATTACCTCAATAAGAGATTTCTTTAACGTAAAT\n-AACGTAATTTTTAGTTTACGGATTAGTTTAGGAAAACGTATCGAACACTATCCTTTATCT\n-TCAATTATATGGGGTCGAAAAATGAACTAATCTGATGTCTTGTTGGGCACCCAAGCGTAG\n-CGTAAAGCAGCGCACTGTGGTCCAGAAACTCCGTGGCATAAAGCCTAAATTTCTTTTATG\n-CGTCAATATATCGTCCTCTGAAGCAATTATTTTCTACAGAAAAGTGATTAGTGATTTTGA\n-AAACTCCAATATACCCCCAGCAAATGGGACGCCGAAACTTATCTTACCAAAAAATGCAGG\n-AGAAAGATTAAAAAGGAAACTGGCATCGAATCTGGCAAGTGAAAAGTGACCACGACACAA\n-GTCTTTTGATTCATGCAGCAACTGTGTCCGCTAGAAAAGAATGCAAGAGGACGTTGCCTT\n-TGTTCTTAAAGAAACTTTAAAAACACCAGAATTTCCAAGCGAATCGAGGATGTTCAATGC\n-CAAAACCAACTCTTTCACCAGACAGCTCTAGCTTATCTCCTGGAAAACACGCTGACAAAA\n-CAGCAATATATAAGCACCAGGCTTTTAACAGCCATAACGGCGATATATATCCGCCGTATA\n-ATGAAGTGATCGAAGCTAAATTACAGTGCCGACCAGAGGGTGAAGTAATGGAAACACTGC\n-TCAAGTGCTATTACAAAATCTCTTTGATCATACAAGCGCAAAGATTAATTGCTGCAATCT\n-GATGTATTCGGCGAATTTCCAGATATCTTTAAATCAAATTAATTTGCAGCTACGGATTTG\n-ATGGGACAACTGGTCATAGTGCTTACAAGCAGAAATATGAAACTGGAAGCACTTGGCACA\n-CCAATTTCTGATCAATCTTTATTTGTAACTTCTGTCATACCCATAAATTATAGATTCGTT\n-TAATCGGCATATCTGGATAAACAGAGCACCGCAGTCCATCTGGATTTTGCAGACTCCTAA\n-AATTGAGTTGATAAAGGAAACTGCTGTCCACATAATGATGGAAAAATCAGTTAGATAATC\n-AAATTAAAAAAAAATCTTACGCCATTCACTTAACATGATGAAAATCGTGACATAGAATTT\n-AGCTATGAAATGCACATGACACTTATAGATGGAAAAGTCCTAAACGTATTAACAGACACT\n-GTAAATCTACTCCACGTTGTCCGATCTGTGGAGTCAGCCCAACACAAATGTTGAAAATTT\n-CAAATTTTAGTTCAGAAACCTTTTGTACCAAAAGTGCTGCTTTACAATTTGGGGTAAGTC\n-CGATTTACATGCCTGATCCGTTTTTTTGAATTTGTTTTAAAACGTATCATACAGAGCTGA\n-GATAAAAAAAGTGGCATATAAAAGGAGAGGACAAGGTTAAAAAAATGAGTATTCGAAAAA\n-ATATATCCAGGAGGAAATGTGGAGAGAAATGGGCCTTCGAGTAAGCATGCCGAAGCAGAA\n-TGGCAGCGGTAATAGCAATGATGGTAATACGGCAAGAAGAGCTGCAAGTACCAAATTCTC\n-GTCGATAACCAGCTTTAACGAAAATCTTTGGAAAAAAAGTTTCACATTATTTTAATAGCA\n-ATATCATCCAACTATTTTATAAATTCCGACAAATTTCGTTCTTTTGCGATATAACTTTTC\n-AATTATATATATGTAAACGTATCCATGGTATCCTATGTCACTAACGATCCATAAAGTAAT\n-TGGTCCACGGCTATCAAATCAATAATTCGGCGTTGTCTAATTTGATGCCTAGGCGAAATG\n-CTATGAAGCCCGGAATAAATCCTGAAGCAAAAGGACCGATTATCACATGCAAGGAAAAAT\n-AGTTTGATCAATACGATGATGATATTTTCCACAGAGCTATTGATTCCTCGACCCACTATT\n-ATCAACAATATGTTTAAAAGAAAGAGAGAGAAAAAAATAGGAAAAAAACCACTTCCGAAG\n-GCAGGTAATAAGTCTTTTGAAATACAGTCTAGTCTTAAACCTGATCCATCAGACAAAAAT\n-ATTTGACTCACATCTGATTCTGATTCGAGTTCAGATTCGAAAAATTATAATGTTGAGCTA\n-GAAGAAGAAGAGGGCGATTATTTTTAAAACAATAATGTACACATCTCTATTTAAAAAAAA\n-AAAAAAAAAAATGAAATTTCGTTGAATCCTGAGTCATACCAGTAGTTAATATGGGAGGCA\n-AGAGAGGGAGTAGTGGTCGCACAGATTTCAAATTTTGTGTGTGCAAACTATTTGTGGTTT\n-GAAAAACAAAATGTACAAAGTTTCAGTCTGTAGCTCAATTTTAGACTTTATGCCAAAAAA\n-TCGAGCAATACGTAACTGAACGAAGTAATAACGA\n' |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result3_assembly_graph.dot --- a/test-data/result3_assembly_graph.dot Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| @@ -1,10 +0,0 @@ -digraph { -nodesep = 0.5; -node [shape = circle, label = "", height = 0.3]; -"0" [style = "filled", fillcolor = "grey"]; -"1" [style = "filled", fillcolor = "grey"]; -"2" [style = "filled", fillcolor = "grey"]; -"3" [style = "filled", fillcolor = "grey"]; -"0" -> "2" [label = "id 1\l39k 28x", color = "black"] ; -"1" -> "3" [label = "id -1\l39k 28x", color = "black"] ; -} |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result3_assembly_graph.gfa --- a/test-data/result3_assembly_graph.gfa Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,2 +0,0 @@\n-H\tVN:Z:1.0\n-S\tedge_1\tCGGTGAAAAGTCTAGTGTTCTTCTTCGAGAGTTTCTTTTCAGCATATTTGAAAATTCCAGGATTCCCTACAACCCATCATTTTTTTATTTCTTTCACTGCGTCTGATTTCTACTTCACTTTCTGCTATCATTTATTTCATCACCAGCTCTTTAACTGGATCGGCATTCTTTAGACATGTGGAATTTCATCATGTTGTACATTTTTCTAGAATCAACAGATTCATCATTTTCCACCATTGGAAAATCGACTCTACATTATCTTTTATTAAAAGAATCATAAAATATTTCATGTTGAACCTTCGAGTCTTCTTCTGCGTTTTAATTCGCCGTCATCTGATCACCGAATCGTATCTCGCTTTCACAGCCCATCTTTTAATGCCAGCTCAAGAACTGAGCCAAACAGCACCTAGAATGCCCCAGCCCGGAACCGATAGGCACTGGGTCGCGAAAAGCGCAGAGTAACGACATATTTGCCGCACTCGCTTCAGGGCCCAATGAAATTCTTCGCACATGGATTTGGCAATCCTCCCTTCGGTGCTCTGGAGGACAAAACCAACATTGGCCTCTTTGGGGCAAGAGAGACCATTTTCGCGGTACTAACTGGGCCAGTGTCAGCCCAGCCCGTTAGAGTTGCTCTTTTCGGCACAGATCTCCCACGCGTACGATAATTCACTGGACAAACTCCCTCAGCAGAAATCTGCGAGGGACATATACCAACAAAGCTGCAAAAGAATCCGATCTCCGTGCGAGAAGAATTCTCTTCAAACGACTCACGAGAAACGAGTGCGCAAATATGTCGTTATTCTGCCTTTTTCGCGACCCCGAACATATCGGTTCCGGGCTGGCATTCTAGGTCTGTTTCGCGTTGGCTCAGTTCTTAAGAAATGAGCAGCGTCTAAAAAAGAGATGAGGCCTTGAAAGCGAGATACGATTCTGGTGATCGAGATGACAAACGAATTAAAACATGAAGAAGACTCGAAGGTTCAACATAAAAGTATTTATGATTCTTTAATAAAGATAATGTAGAGTCCTCGATTTTCCAATGGTGGAAAATGATGAATCTGTTGATTCTAGAAAAAATGTACAACATAGTAAAAATTCCACATGTCTAAAGAATGCCGATCCAGTTAAAGAAACTGGTGATGAAATAAAATGATAGCAAAAGTGAGTAAGAAATCAGGACGCAGTGAAAGAAATAAAAAATGATGGGTTGTAGGTGCTTGTCCTGGAATTTTCCAAATATGCTGAAAAGAAACTCTCGAAGAAAAAGCGAACACTAGACTTTCGTAATTGATGGCGCGACCGGGCGTATATTTACTTCTGCGAAATGGTTTTGACACTGGTGCTTATTCTATCTAGTTAGGCTCTTCCAAGCGCAGCGGAGACTCCTTTGGAGACTCTGTGGTGAAGAGCGGAGAGCGTAAAAGGGAGCGGAGAGCGGGTGACAGTCCAACCCCGTAACTTGGACAAAGATAAACCTAAACTATCGTATATGATATTGATATTCCCAATAGATTTGATGAAATTGAATTTCGTGGATGACAGATCTTTTGGGAAAAGCTATACAAGATGAACTTGGTTCACATTCAGAGAAAATAAAACGTGGAGTTTGGTGCAGAAGCCTAATAATAAAAGCATAGTAGATTGTAAATGGGTTTTTAGTAGCACTAACAAGATGAGTTTGGAAACTTAGTAGCATAAAGCATCGGCTAGTAGCACGAGGTTTTACACAAGAATATGTGACTGATTATGATGAGACATTTGCACCAGCTGCACGAATTTCCAGTTTTCGGTTTTTTGGCTCTTTCAAATCAATAAAATTTACAAGTCCATCGTATGGATGTGAGAACAGCATTCTTGGAGCAAGATGAAATCTACATGAAGTTGTTCCAAAAGGGTTGCCATATTGCGATGAGAATGCAGAATGCAAAGCTTAATAAAGCAAAATATGGCAGTAAAACAAGCTGCAAGATGCTGGTTTGAAGTTTTTGAAAATGTGCGAAAAGATGTTGTATTTGAAAATCTAATATTATATTAGATAAAGGAAAATTCTTAGATAATATCTATATTTTGTTATATGTGGACGATGTAATAATTGCCACTAGTAAATCCGAAACTAGGTCTAAATTTAAATCATACCTTCTAAATAAATTTAAAATGACTTATTTGAAGGAAGTTCGATATTTTATCGGAATTAAAATTGATAGAAATAAAAGTCAGATATGTCTCAAAGTTAATCTGCATATATAAAGAATGTGTTGAAAAGTTTAATATGGAAGACTGTAATGCAGTTAGTACACCTCTTCCAAGCAAACTAAACTATGAGGCTCTACTAATCTGTAGAATCATGTGAGGCACCATGTAGAAACTTGATCAATAAGTATTTTAAGTCGATATATTCGAATAACAACAATAAGGAATTATGGCTATGCCTTAAAAAGAGTTTTAAGGCATTTTCAAAAAGGAACTGTTGATTTGAGATTGAGATAGTGTACAGTTTAGTATTATTCTTATTGGACATGCTGATTCTGATTGGGCAGGAAATGAGACAGACAGACGAAAGTACTACTGGATATTTATTTAAACTGTTTGAAAGTTGTTTAATTTCATGGAACACAATGAAGCAAAAATCAGTTGCAGCTTCATCCACCGAAGACAGATTACATGGCCTTATTTGAAGGTTTTAGAGAAGCCTTATGGCTCAAGTTTCTTTTATTGGTAGAAATTAAACTAGAATTAAAAGGTCCAGGTTGCATTAGTATTGCAAATAACCCAACTTGCCACAAGAGAATTAAGCACATAGACATAAAATATCATTTTACAATAGAAAAAGTTGAAAATAAACTTATTTGCATTAAGTATGTGGGATCTGAATCACTTTTATACTCAGCATCACTCTCTACCCCGTCGTCGTAACGTTTTCTGACGCGTTTAATTCGGGAGCGAGGCATGTCTGTCTTCTTCGGCGATCAAAACTTAATGTGCAGAACGAACGTTGCAATAATGCGTAGAACCCAAGTCTACCCGCAATCAAACACACTTTGGAGACTTACTTCACTCCACACACACACTAATACCAACACACATTATGGCATGGATAGTGAATCGAGTTCCCGCGTATTTCGCACGTCTTTTGCTGCGCTGCGCGAATTTCGTCATATACGAGTCCGGTCAGCCGTAAACTGCAACATAAACCCGCAAATCCACTCTGGGGTTTGCGCCGCGTTTCTGAGCGTCACGGTGTCGTTCCGAATTCACGAGTGATCCAGTAAACTGGTAATAAATCAGATCAGCTGCATCAGACAATACAGCTGATAGCATTGCCAACCTTTCGCAGTCGACGAGCTGGTAAGACTGGCGTTGCCAGATCAGCGGTGCGATCGTCATTCGGCCGCGCGCTCGTTGGGCGCGAAATTCGAATTCAAATTCAAATTTGAACTAATTAAGTTGAACAAAAAATTTTAAATATAACCTAAGAACTGAAGCTAGTTCTATTTCCCACGGAGCGCTGGGGACCAACAAGCCAAAGTCCCCCCCCTTTATATCTGATGGACAGCACAGGGGAGCAGTGCTCCCCGACCCCAACGACCCGTTTAGGAGGAGTGGTAGGCTATCGAGATCCCCATAAGAGGAGTCGGAACCCCAATCCAGGGAGTGGGAGGTGAGCAAGCAGGCCCCCCCCGCCGCCGAAAGCTAGCGACTGCAGTGCAGCTGTGGAGGTGGAGACTCTGGCCACTACAGTCTCCACGACAGCCACAAGCCTGAAGACAATGGATTTCATCAGCGTGCCGGCCCAAAGGGCGGGAGCGAAGTCCCATCAGGATCGCCGCATCGCTCGCCAGAACTGACCACGACGCTCCAGAATGAGGACCTGCAGGGCATCCTGGACATGATGAAAGCCAAGATCACCGCCATTCTATCCTCGTTCGAGACTAGGCGTCACGTAACCAGCGAGGATAGG'..b'GACACGTGCTCTTGCACGCAATTTACCATGGGCAGACTCCACGGAAATGGATAAAGCGGCTTTCGTCCACTTTCTAAGAAGAAATTCGTTGGCATACGCTTGTGCCTAAAAAATAATCCATAGGAAAGCGTAAGGAGCCGCCACCCGCCGCACCCACATCATCGGAAATCCAAAGCACATAAGGTACTCGAAAATTCCATGAAAATATATCGGCCATTGGCAGCTCCACCTCCAGCTCCAAATGAAATTGAAAGAGATAATGTAAGGACAACGAATCCCTAGAGGCCGGCGAAATTATACAGTTCACCGTGCCCCATAAGAAAGACGGTTAAACCGCCAAAGTCGATGAGGTCAGCGATACTGAGTAGCCGCAGTCAAATACCAATCGATTTGTTGCACTGCCTCATCGAAGAGGACGTAGCCGCTGGCGAAACCAGGTAGCCAGTGGAGGCTGCTGTACCCAAAGTCCCTCCAAACATAGTAGTGCCTGGGTGCACTGCATCGTAGACATGCTAGCTTGACCCTTTTAGAGAAGTTACTGAGCCAGGTAGCTTTCAGCTTACGTCCTCGACCGGAGGAGGCTGTGGGAGTCGAGCCAAAATGGCACCTTATATGTGCGCTATCGCACTCATTTGGTAACAAACCATTATAGCCAAATCCAAATCCTGGGCAAAACTGAATATAAAATGCACCAAAAATTCCCTGAGCTCTGGATTGTCAGCAAACTACGGTCATTACACTTGATTTTGCATACCACCGCTCTCTTTTCGGGAAGGCGTGATCGAGGGCAGTTTAATCGGATGCAAAGTCCCCTGATTATAAATCCACGAGCATCGTGTAGACCAGGATAAGAGCTTTTTCAAGGCAAATACCGCCAAGTGATAGTTTAAATCGTGAAGTAGAAGTCTTAGTTGCATCGGCATTGTTCTTCGCCCTTAACTTTGACCACGTGTAAAATTTTACGGTGGCTTTCATCGATCGCAGAAAGATCTCACAACTGCTTGCATCAGAGCACCCACCGCGTGCAGCGGTGTTGGGCTTGTCCTTTCTTCTGCTAACCAAGTGAAGATCGCAGAGCTGGTTTGCTGAGCTCTTGCTGCCGACTGCGTATGCTGCGAACCTGAAGTAGCCACAACACGAATGATCGTGTCCAGTCTTGAGTATCTTGGAATAGTTTCTTCATATATGTGTTAATTTTGCCTCATATTTACTTATAAACCTCTACGATTCTAATTCTAGCTTTTAACTCTGTGGGAGATCTGACAAACACATATATGTGATTTTCTCCCAATTTATATATTAATATCATACAGCAGATCATCACCAGCATTCAGGCCTGCTGACATCGATGGAAAGTGCGTAAGTACGGCATAGCGTGAACAAACAAAAATAATAATAACACACGTGCATATATAAAGTCAGATATTCCTACAGTGTGCTAAAAATACCTTGCCTTAATGAATCGTATATCTAGGTCTCTTAATTTAAAGAATTTTTATAGTTTAAATATCAATTAATCATACATAATTCTAATGTAAAGTAAGCCAAAACAAACAAAAAGTAGTAATGTAAACTTAAATACCAACATTTGCATTCCTATCTTAATTATTTTTTTCCTTTATTTTGTCGTGGACAAGCAAAAAATTACCTCAATAAGAGATTTCTTTAACGTAAATAACGTAATTTTTAGTTTACGGATTAGTTTAGGAAAACGTATCGAACACTATCCTTTATCTTCAATTATATGGGGTCGAAAAATGAACTAATCTGATGTCTTGTTGGGCACCCAAGCGTAGCGTAAAGCAGCGCACTGTGGTCCAGAAACTCCGTGGCATAAAGCCTAAATTTCTTTTATGCGTCAATATATCGTCCTCTGAAGCAATTATTTTCTACAGAAAAGTGATTAGTGATTTTGAAAACTCCAATATACCCCCAGCAAATGGGACGCCGAAACTTATCTTACCAAAAAATGCAGGAGAAAGATTAAAAAGGAAACTGGCATCGAATCTGGCAAGTGAAAAGTGACCACGACACAAGTCTTTTGATTCATGCAGCAACTGTGTCCGCTAGAAAAGAATGCAAGAGGACGTTGCCTTTGTTCTTAAAGAAACTTTAAAAACACCAGAATTTCCAAGCGAATCGAGGATGTTCAATGCCAAAACCAACTCTTTCACCAGACAGCTCTAGCTTATCTCCTGGAAAACACGCTGACAAAACAGCAATATATAAGCACCAGGCTTTTAACAGCCATAACGGCGATATATATCCGCCGTATAATGAAGTGATCGAAGCTAAATTACAGTGCCGACCAGAGGGTGAAGTAATGGAAACACTGCTCAAGTGCTATTACAAAATCTCTTTGATCATACAAGCGCAAAGATTAATTGCTGCAATCTGATGTATTCGGCGAATTTCCAGATATCTTTAAATCAAATTAATTTGCAGCTACGGATTTGATGGGACAACTGGTCATAGTGCTTACAAGCAGAAATATGAAACTGGAAGCACTTGGCACACCAATTTCTGATCAATCTTTATTTGTAACTTCTGTCATACCCATAAATTATAGATTCGTTTAATCGGCATATCTGGATAAACAGAGCACCGCAGTCCATCTGGATTTTGCAGACTCCTAAAATTGAGTTGATAAAGGAAACTGCTGTCCACATAATGATGGAAAAATCAGTTAGATAATCAAATTAAAAAAAAATCTTACGCCATTCACTTAACATGATGAAAATCGTGACATAGAATTTAGCTATGAAATGCACATGACACTTATAGATGGAAAAGTCCTAAACGTATTAACAGACACTGTAAATCTACTCCACGTTGTCCGATCTGTGGAGTCAGCCCAACACAAATGTTGAAAATTTCAAATTTTAGTTCAGAAACCTTTTGTACCAAAAGTGCTGCTTTACAATTTGGGGTAAGTCCGATTTACATGCCTGATCCGTTTTTTTGAATTTGTTTTAAAACGTATCATACAGAGCTGAGATAAAAAAAGTGGCATATAAAAGGAGAGGACAAGGTTAAAAAAATGAGTATTCGAAAAAATATATCCAGGAGGAAATGTGGAGAGAAATGGGCCTTCGAGTAAGCATGCCGAAGCAGAATGGCAGCGGTAATAGCAATGATGGTAATACGGCAAGAAGAGCTGCAAGTACCAAATTCTCGTCGATAACCAGCTTTAACGAAAATCTTTGGAAAAAAAGTTTCACATTATTTTAATAGCAATATCATCCAACTATTTTATAAATTCCGACAAATTTCGTTCTTTTGCGATATAACTTTTCAATTATATATATGTAAACGTATCCATGGTATCCTATGTCACTAACGATCCATAAAGTAATTGGTCCACGGCTATCAAATCAATAATTCGGCGTTGTCTAATTTGATGCCTAGGCGAAATGCTATGAAGCCCGGAATAAATCCTGAAGCAAAAGGACCGATTATCACATGCAAGGAAAAATAGTTTGATCAATACGATGATGATATTTTCCACAGAGCTATTGATTCCTCGACCCACTATTATCAACAATATGTTTAAAAGAAAGAGAGAGAAAAAAATAGGAAAAAAACCACTTCCGAAGGCAGGTAATAAGTCTTTTGAAATACAGTCTAGTCTTAAACCTGATCCATCAGACAAAAATATTTGACTCACATCTGATTCTGATTCGAGTTCAGATTCGAAAAATTATAATGTTGAGCTAGAAGAAGAAGAGGGCGATTATTTTTAAAACAATAATGTACACATCTCTATTTAAAAAAAAAAAAAAAAAAATGAAATTTCGTTGAATCCTGAGTCATACCAGTAGTTAATATGGGAGGCAAGAGAGGGAGTAGTGGTCGCACAGATTTCAAATTTTGTGTGTGCAAACTATTTGTGGTTTGAAAAACAAAATGTACAAAGTTTCAGTCTGTAGCTCAATTTTAGACTTTATGCCAAAAAATCGAGCAATACGTAACTGAACGAAGTAATAACGA\tdp:i:28\n' |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result3_assembly_info.txt --- a/test-data/result3_assembly_info.txt Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,2 +0,0 @@ -#seq_name length cov. circ. repeat mult. graph_path -contig_1 40414 27 - - 1 *,1,* |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result4_assembly.fasta --- a/test-data/result4_assembly.fasta Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,596 +0,0 @@\n->contig_1\n-CTGCAAGCTGATGTATTGTTTACCAGGGGTCATACAGCAGCATTTTACATTTGAAACAAT\n-CAAAGCATTTGGCAGCCCAGCCAACCAACAGACTTTGGTAGAGCAGCCGTCATGTTTTGG\n-GGATGTCTCTTCCCACATGGATTGCGGATCGACTTGGTACGGATAGACAGGTACTTTTAA\n-ATCAGGAACGCATACCTCTTATCTTGAACAACCAGCGTTTACGTCTGAAATAGACCTTTC\n-CAACTACTGAATGATTCTTCAGCAGTGACAATGCTCCATGCCATGTCGGTAGATACCAAC\n-ACAAAATTTAACGACCTAATCTGGATGAACTCTCCGTGCAAAAGCCCAGACCCAATACTT\n-CGCTGAAAACGCCTGGGCTTTGCTGAAAACCAAACGAACCACTGATGTAAAACAGAAACG\n-AGAGTGAGCCAGCCATTGAAAGAGTGGAGATCTGGTCCAACGACATTAGAATCTGTGCCA\n-ACATGGTGGTAAGGTCACTGCACCAAAAAGACTTCAAGCCAGTTAGTTGATGCCAAAGGT\n-GAAAAGTTGCAAAACATTAGTATTGTATTTATATAAAATAAAGAAATTCTTATGTTGAAA\n-TAGATGTTAAGCTGAAATTTACTAAATTAAGTTGAGGAAAATACTTTAAGGCAATAAACA\n-TGTGAAAATACTATTGACAACTTGCATGCATATTTTCTTTGCTTAAGCTTTGTACTATGA\n-ACCGTTATCTTTCGTATTTCTTTTCGACTACCTTCTACCATAGATCAAGCTAAGCGATAA\n-GAACTATCTCTGACAAATCGGACTACAACAAGAAGAAATATAACAAAAGAAGTTGAAGTT\n-GCATCATGTGCGTTGTGAAAGTAATTTTGACCACCTCTGCATATGTTGCAGTGAGCACTG\n-GTGCGAAGTCTTAAATGTACTGATGAGAAATCAAACGCTACTGTTGGCATTTTGTTGTGA\n-CTTTTGGTGTTTTAAGCGCCGCAATTCAGAATGGCGTGGTCAAGTATTTTGAGATTCGCA\n-TGGCTGATTCAGTAGTCATGTGGAGATTTAAAAGAAAATAAAACAATGTCACATTTCAAC\n-TTGACAACGCCAAACAAGGTAAAAAGGATTGCAACTATGATAAACTCTACAAGAGTCCGC\n-CCCTTGCTCCAGAATTCTCAAAGAAAATTTTGGAAAACTAACGCAGAAGAGCATCAAAGT\n-GTCGATGAGCAAATAATTGCATTCAAAGGTACGTTTTTAATTTTCTTTAAATTAGCTTTA\n-TTTTAATAATTGCTTTTGTTGCAGGTCGATCCACGCTTAGGGCATATAATCCAAACCTCA\n-TAAATGGGGTCTTAAAATGTTTACGCGGGCTGGAATATCTGGATTAGTTTATGATTTTAC\n-GCTATATGTTGAGAAGGCACTTCTCCTTCTTATGGCTTGGGAATATCATCTTATGTTGTC\n-TTATATTTGGCAGAAAGTCTTCCCAAAGACAAAATTTTAAACTGTATTTGATAATTGGTT\n-TACGTCTGTAATCCTCTGATTTCGTTGAAGGAAATAGGAATCTTGCAACAGGTACTGTAC\n-GATGATAAAGTTGAACATTGGGTAGTTTTTGGAGAAAGAGGACGTTGCAGACTGTGAAAA\n-TTGCAACACCGATGACCAAATGCTACATGCAAGTCCATCTGTGCTGCAATAACAATAAAA\n-CTGTTTTTGTCATACTCATACTTAAATTGTCATTATAAAGAAAAATATTTCATATTCTGT\n-GATTTATAAAAACAATGCTTACAATCACTACTGCCCGACGTTGCTCATAAGAAAATCCTT\n-ATACTGCCCAAACTAATGGGCATGCTAAAATTTACTAAATTTTTCTAAAATAAATCAAAA\n-ACATTAATGATAAAACAAAATTTCACGGGTAAAAGTTACGCGAAAGGGTTAAAGACTCGT\n-AGCATACTTTGGAATCCTGAATCTCACATGAATAATGGAAAGTTTTGATCTAAGCTCAGA\n-TCATTCTCAATAATAGTGACATGGTACAGTAGCTCATATATTGCAAATACAGATATCAAT\n-GCATTTTAAAGTTATCTGGAACAGCTATCAGCCTGGATATCTCTAAAATCAGAGAGGAGA\n-GCTACTGTGGAGCTACTCACAAACAAGATCCATAGCAAGCTATATGTACGAAGCTACAGC\n-CAGAAACTCACAATCAAATCAGCTCTATCTCTCAGCTGAAATCCGACAACAAATACAACA\n-CAAGAGAAATTTGCTGTAAGAGATGGCAAGAAACTCTCTACCCTGCCGACAAAAGATCGT\n-ATACCAAGGCTGCATCTGATCGCAGAAAATCACTGTCAACTTTAAGAAATTAATCTCTCG\n-CTGAATATCTTAGAAATCTAGATCCACATTCTTGTAACCACGAACATAATTTATGGAGAG\n-TAACCAAATATCTCAAGGACCTGCAAAAGAAACACAGTAGTCCGAAACTCTAATGGCGAA\n-TGGCGTAGATCTGATGATGAATCGCCAAAGCATTTGTTTAACACCTGCACTCTGTATTTC\n-AGCCAAATGATATTGATAACCCGCAAACAGAAAGGGAAGTAGATAACTTTTCGAGTCACC\n-GCCAAATGAGCTTACCCATTCGTAAAATCAGCATTAATGAAGTTTCATCAGAAATGGCTA\n-AAAGTAAAAGGCTCCAGATTGGGACAAAATAGATGGCATAGCCTTGAAAAAATGGTGGTT\n-AGAGTTGACCACTTCCCAAGCCAATGGAAATGTGCAGAATTATAGAATCCTTAAACCAAA\n-CAAGGCAGAAAATGAAGTGACATTGTACCGTCCCATTAGTTTGTTGTCAATCATTTTCTA\n-AAGTATTTAAAAATAATTTAAAGAGAATGTTGTCACTCTTGAAGAATTGCATATCATACC\n-CAAACACCAGTTTGATTCGAAGAGCCACGGAAACCCTGAGCAATGTCACAGGATTAAAAT\n-GAAATTTCGTCAGCATTTGAGAGCAAAAATACTGCACTGCTAAATTTTTGACGTTTAACA\n-AGCGTTTGATCGAGTCTGGCATGATGGCTATCATATAAAACCATTTTATATTCTGTATGC\n-TCCATACATCCCGGTAAGGGATTGCGAGAAATTTGAAATCCATTAACACCTTCCAGAAGG\n-TAGCGATCATTTTGAGAACTTTGCTTATGACATAGGGTCCTTTATGCTTTGGAATTAACT\n-TCTTAGCTATGCCTGTTGTTGAGTCAAAATTTTTAACCATGACGTAGTCGCCTTTTGTGA\n-ACACTCCTGATCGTTTTCGTTTTTTGTCAACATATTCTTTATTGTATGCTTGTGCTATTT\n-TCTGACTTGCCTCGCCTTTATTTCTAATACTTTCTAAATCTCTTTCTTCAATCGTTTCTC\n-CAATTTCCTCAATTTTTTCTTTTAACTCATCCATAATTTGTCCTTTTTGTTGTAAACCAA\n-ATAACATTATGCTAGGATACTGTTTAATGCTGCGGTGTTGTGCATTGTTCAGGGGTATAT\n-TCGACCTTTTCGAAGACTAAGTCCCAGTGTAGACCTTGATCAGGTTCAATTAACTTGCTA\n-ATCATTGGACCAAGACTTCGGCTTATACGTTCAACTTGACCGTTGGCTTGTGGCGATCCT\n-GTTGCAATTTTTATGTGTTTAACATTGCATTCTTTCAAAAATGAGTCAAAATCGCCAGAC\n-GTGAAACATGCTCCTCTATCTGATATGATACACTTAGGCCAACTGTATGCTCGACTTCTT\n-TTAACGACTTCTTTTGTGTTCGTAGTTTTTGTTGCGTATAGTCTGACAAACTTTGTGAAT\n-GCATCTACTATCACTAGAATATGTTTCTTCGGTCTACCCAAGTCTACTGGACCATAATGG\n-T'..b'AGCCGTCGTGGGTAACGCCTTACCGGTGGATTTCGCGGCAGATCG\n-ATGGTTGTCCGTTTTGCGGACCTGCACATTCGGTAATGCCTGTCTGGGTAGCGCCACCTG\n-GCTGCGCTTTGTTTTTTCTGCCTCAGTCTGTGTGGCGAGTACTCGGTGGGGGGGCTTCTT\n-GTTGATACCCTCCTGTAACTCAATCGCTCTGTTATTGAGCGCCGATAGGTCCACTAGCAC\n-GCCCCTATCCTCGCTGGTTACGTGACGCCTAGTCTCGAACGAGGATAGAATGGCGGTGAT\n-CTTGGCTTTCATCATGTCCAGGATGCCCTGCAGGTCCTCATTCTGGAGCGTCGTGGTCAG\n-TTCTGGCGAGCGATGCGGCGATCCTGATGGGACTTCGCTCCCGCCCTTTGGGCCGGCACG\n-CTGATGAAATCCATTGTCTTCAGGCTTGTGGCTGTCGTGGAGACTGTAGTGGCCAGAGTC\n-TCCACCTCCACAGCTGCACTGCAGTCGCTAGCTTTCGGCGGCGGGGGGGCCTGCTTGCTC\n-ACCTCCCACTCCCTGGATTGGGGTTCCGACTCCTCTTATGGGGATCTCGATAGCCTACCA\n-CTCCTCCTAAACGGGTCGTTGGGGTCGGGGCACTGCCCCTGTGCTGTCCATCAGATATAA\n-AGGGGGGACTTTGGCTTGTTGGTCCCCAGCGCTCCGTGGGAAATAGAACTAGCTTCAGTT\n-CTTAGGTTATATTTAAAATTTTTGTTCAACTAATTAGTTCAAATTTGAATTTGAATTCGA\n-ATTTCGCGCCCAACGAGCGCGCGGCCGAATGACGATCGCACCGCTGATCTGGCAACGCCA\n-GTCTTACCAGCTCGTCGACTGCGAAGGTTGGCAATGCTATCAGCTGTATTGTCTGATGCA\n-GCTGATCTGATTTATTACCAGTTTACTGGATCACTCGTGAATTCGGAACGACACCGTGAC\n-GCTCAGAAACGCGGCGCAAACCCCAGAGTGGATTTGCGGGTTTATGTTGCAGTTTACGGC\n-TGACCGGACTCGTATATGACGAAATTCGCGCAGCGCAGCAAAAGACGTGCGAAATACGCG\n-GGAACTCGATTCACTATCATGCCATAATGTGTGTTGGTATTAGTGTGTGTGTGGAGTGAA\n-GTAAGTCTCCAAAGTGTGTTTGATTGCGGGTAGACTGGGTTCTACGCATTATTGCAACGT\n-TCGTTCTGCACATTAAGTTTTGATCGCCGAAGAAGACAGACATGCCTCGCTCCCGAATTA\n-AACGCGTCAGAAAACGTTACGACGACGGGTGAGAGTGATGCTGAGTATAAAAGTGATTCA\n-GATCCCACATACTTAATGCAAATAAGTTTATTTTCAACTTTTTCTATTGTAAAATGATAT\n-TTTATGTCTATGTGCTTAATTCTCTTGTGGCAAGTTGGGTTATTTGCAATACTAATGCAA\n-CCTGGACCTTTTAATTCTAGTTTAATTTCTACCAATAAAAACTTGAGCCATAAGGCTTCT\n-CTAAAACCTTCAAATAAGGCCATGTAATCTGTCTTCGGTGGATGAAGCTGCAACTGATTT\n-TTGCTTCATTGTGTTCCATGAAATTAAACAACTTTCAAACAGTTTAAATAAATATCCAGT\n-AGTACTTCGTCTGTCTGTCTCATTTCCTGCCCAATCAGAATCAGCATGTCCAATAAGAAT\n-AATACTAAACTGTACACTTTTTCAATCTCAAATCAACAGTTCCTTTTAAATGCCTTAAAA\n-CTCTTTTAAGGCATAGCCATAATTCCTTATTGTTGTTATTCGAATATCGACTTAAAATAC\n-TTATTGATCAAGTTTCTACATGGTGCCTCACATGATTCTACAGATTGTAGAGCCTCATAG\n-TTTAGTTTGCTTGGAAGAGGTGTACTAACTGCATTACAGTCTTCCATATTAAACTTTTCA\n-ACACATTCTTTATATATGCAGATTAACTGAGACATATCTGACTTTTATTTCTATCAATTT\n-TAATTCCGATAAAATATCGAACTTCCTTCAAATAAGTCATTTTAAATTTATTTAGAAGGT\n-ATGATTTAAATTTAGACCTAGTTTCGGATTTACTAAGTGGCAATTATTACATCGTCCACA\n-TATAACAAAATATAGATATTATCTAAGAATTTTCCTTTATCTAATATAAATTAGATTTTC\n-AAATACAACATCTTTTCGCACATTTTCAAAACTTCAAACCAGCATCTTGCAGCTTGTTTA\n-CTGCATATTTTGCTTTATTAAGCTTTGCATTCTGCATTCTCATCGCAATATGGCAACCCT\n-TTTGGAACCTTCATGTAGATTTCATCTTGCTCCAAGAATGCTGTTCTCACATCCATACGA\n-TGGACTTGTAAATTTTATTGATTTGAAAGAGCCAAAAAACCGAAACTGGAAATTCGTGCA\n-GCTGGTGCAAATGTCTCATCATAATCAGTCACATATTCTTGTGTAAACCTCGTGCTACTA\n-GCCGTGCTTTATGCTACTAAGTTTCCAAACTCATCTTGTTAGTGCTACTAAAAACCCATT\n-TACAATCTACTATGCTTTTATTATTAGGCTTCTGCACCAAACTCCACGTTTTATTTTCTG\n-AATGTGAACCAAGTTCATCTTGTATAGCTTTTCCCAAAAGATCTGTCATCCACGAAATTC\n-AATTTCATCAAATCTATTGGGAATATCAATATCTATCGATAGTTTAGGTTTATCTTTGTC\n-CAAGTTACGGGGTTGGACTGTCACCGCTCTCCGCTCCCTTTACGCTCTCCGCTCTTCACC\n-ACAGAGTCTCCAAGGAGTCTCCGCTGCGCTTGGAAGAGCCTAACTAGATAGAATAAGCAC\n-CAGTGTCAAAACTCATTTCGCAGAATAAATATACGCCCGGTCGCGCAATCTACGAAAGTC\n-TAGTGTTCGCTTTTCTTCGAGAGTTTCTTTTCAGCATATTTGGAAAATTCCAGGACAGCA\n-CCCTACAACCCATCATTTTTTATTTCTTTCACTGCGTCTGATTTCTTACTCACTTTTGCT\n-ATCATTTATTTCATCACCAGTTTCTTTAACTGGATCGGCATTCTTTAGACATGTGGAATT\n-TTACTATGTTGTACATTTTTCTAGAATCAACAGATTCATCATTTTCCACCATTGGAAAAT\n-CGAGCTCTACATTATCTTTATTAAAAGAATCATAAATACTTTTATGTTGAACCTTCGAGT\n-CTTCTTCATGTTTTAATTCGTTTGTCATCTCGATCACCGAATCGTATCTCGCTTTCAAGC\n-CTCATCTCTTTTAGACGCTGCTCATTTCTTAAGAACTGAGCCAACTGCGAAACAGACCTA\n-GAATGCCTAGCCCGGAACCGATATGTTCGGGGTCGCTTGAAAAGGCAGAGTAACGACATA\n-TTTGCTGCACTCGTTTCTCGTGAGTCGTTGAGAGAATTCTTCTCGCACGAGATCGGATTC\n-TTTTGCAGCTTTGTTGGTATATGTCCTCGCAGATTTCTGCTGAGGAGTTTGTCCAGTGAA\n-TTATCGTACGCGTGGGAGATCTGCGTCGAAAGAGAAATTCTACTTGGGCTGGGCTGACAC\n-TGGCCCAGTTAGTACCCAGCGAAAGTATGGTCTCTTGCCCGCCCCAAGAGAGAGCGCAGA\n-TGTTGGTTTTGCTAACCCTCCAGAGCACCGGAGAGGAGGATGTCGGCTCCGATAAGTACA\n-TCTATTTGTGCGCTCTCATAGAATTTTGGATCCGCCAGTGGAAAATCGGGAAGATCCCGA\n-AGGGAAGAGGAAGGTAGGAAGACGCTTCCGGCGCTGGTTGAGGGGAGGACGCAGGCCGTC\n-GTCTCCAACTGCAACGCAGGCTAGTCGGAGATCCGGATGAACTTCACAGAGCTTCTTGGA\n-CTGAGCAGCTACTGTTTGCTTTAAAGCCCGGAAGCAATGTGGCAC\n' |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result4_assembly_graph.dot --- a/test-data/result4_assembly_graph.dot Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| @@ -1,10 +0,0 @@ -digraph { -nodesep = 0.5; -node [shape = circle, label = "", height = 0.3]; -"0" [style = "filled", fillcolor = "grey"]; -"1" [style = "filled", fillcolor = "grey"]; -"2" [style = "filled", fillcolor = "grey"]; -"3" [style = "filled", fillcolor = "grey"]; -"0" -> "2" [label = "id 1\l34k 32x", color = "black"] ; -"1" -> "3" [label = "id -1\l34k 32x", color = "black"] ; -} |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result4_assembly_graph.gfa --- a/test-data/result4_assembly_graph.gfa Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,2 +0,0 @@\n-H\tVN:Z:1.0\n-S\tedge_1\tCTGCAAGCTGATGTATTGTTTACCAGGGGTCATACAGCAGCATTTTACATTTGAAACAATCAAAGCATTTGGCAGCCCAGCCAACCAACAGACTTTGGTAGAGCAGCCGTCATGTTTTGGGGATGTCTCTTCCCACATGGATTGCGGATCGACTTGGTACGGATAGACAGGTACTTTTAAATCAGGAACGCATACCTCTTATCTTGAACAACCAGCGTTTACGTCTGAAATAGACCTTTCCAACTACTGAATGATTCTTCAGCAGTGACAATGCTCCATGCCATGTCGGTAGATACCAACACAAAATTTAACGACCTAATCTGGATGAACTCTCCGTGCAAAAGCCCAGACCCAATACTTCGCTGAAAACGCCTGGGCTTTGCTGAAAACCAAACGAACCACTGATGTAAAACAGAAACGAGAGTGAGCCAGCCATTGAAAGAGTGGAGATCTGGTCCAACGACATTAGAATCTGTGCCAACATGGTGGTAAGGTCACTGCACCAAAAAGACTTCAAGCCAGTTAGTTGATGCCAAAGGTGAAAAGTTGCAAAACATTAGTATTGTATTTATATAAAATAAAGAAATTCTTATGTTGAAATAGATGTTAAGCTGAAATTTACTAAATTAAGTTGAGGAAAATACTTTAAGGCAATAAACATGTGAAAATACTATTGACAACTTGCATGCATATTTTCTTTGCTTAAGCTTTGTACTATGAACCGTTATCTTTCGTATTTCTTTTCGACTACCTTCTACCATAGATCAAGCTAAGCGATAAGAACTATCTCTGACAAATCGGACTACAACAAGAAGAAATATAACAAAAGAAGTTGAAGTTGCATCATGTGCGTTGTGAAAGTAATTTTGACCACCTCTGCATATGTTGCAGTGAGCACTGGTGCGAAGTCTTAAATGTACTGATGAGAAATCAAACGCTACTGTTGGCATTTTGTTGTGACTTTTGGTGTTTTAAGCGCCGCAATTCAGAATGGCGTGGTCAAGTATTTTGAGATTCGCATGGCTGATTCAGTAGTCATGTGGAGATTTAAAAGAAAATAAAACAATGTCACATTTCAACTTGACAACGCCAAACAAGGTAAAAAGGATTGCAACTATGATAAACTCTACAAGAGTCCGCCCCTTGCTCCAGAATTCTCAAAGAAAATTTTGGAAAACTAACGCAGAAGAGCATCAAAGTGTCGATGAGCAAATAATTGCATTCAAAGGTACGTTTTTAATTTTCTTTAAATTAGCTTTATTTTAATAATTGCTTTTGTTGCAGGTCGATCCACGCTTAGGGCATATAATCCAAACCTCATAAATGGGGTCTTAAAATGTTTACGCGGGCTGGAATATCTGGATTAGTTTATGATTTTACGCTATATGTTGAGAAGGCACTTCTCCTTCTTATGGCTTGGGAATATCATCTTATGTTGTCTTATATTTGGCAGAAAGTCTTCCCAAAGACAAAATTTTAAACTGTATTTGATAATTGGTTTACGTCTGTAATCCTCTGATTTCGTTGAAGGAAATAGGAATCTTGCAACAGGTACTGTACGATGATAAAGTTGAACATTGGGTAGTTTTTGGAGAAAGAGGACGTTGCAGACTGTGAAAATTGCAACACCGATGACCAAATGCTACATGCAAGTCCATCTGTGCTGCAATAACAATAAAACTGTTTTTGTCATACTCATACTTAAATTGTCATTATAAAGAAAAATATTTCATATTCTGTGATTTATAAAAACAATGCTTACAATCACTACTGCCCGACGTTGCTCATAAGAAAATCCTTATACTGCCCAAACTAATGGGCATGCTAAAATTTACTAAATTTTTCTAAAATAAATCAAAAACATTAATGATAAAACAAAATTTCACGGGTAAAAGTTACGCGAAAGGGTTAAAGACTCGTAGCATACTTTGGAATCCTGAATCTCACATGAATAATGGAAAGTTTTGATCTAAGCTCAGATCATTCTCAATAATAGTGACATGGTACAGTAGCTCATATATTGCAAATACAGATATCAATGCATTTTAAAGTTATCTGGAACAGCTATCAGCCTGGATATCTCTAAAATCAGAGAGGAGAGCTACTGTGGAGCTACTCACAAACAAGATCCATAGCAAGCTATATGTACGAAGCTACAGCCAGAAACTCACAATCAAATCAGCTCTATCTCTCAGCTGAAATCCGACAACAAATACAACACAAGAGAAATTTGCTGTAAGAGATGGCAAGAAACTCTCTACCCTGCCGACAAAAGATCGTATACCAAGGCTGCATCTGATCGCAGAAAATCACTGTCAACTTTAAGAAATTAATCTCTCGCTGAATATCTTAGAAATCTAGATCCACATTCTTGTAACCACGAACATAATTTATGGAGAGTAACCAAATATCTCAAGGACCTGCAAAAGAAACACAGTAGTCCGAAACTCTAATGGCGAATGGCGTAGATCTGATGATGAATCGCCAAAGCATTTGTTTAACACCTGCACTCTGTATTTCAGCCAAATGATATTGATAACCCGCAAACAGAAAGGGAAGTAGATAACTTTTCGAGTCACCGCCAAATGAGCTTACCCATTCGTAAAATCAGCATTAATGAAGTTTCATCAGAAATGGCTAAAAGTAAAAGGCTCCAGATTGGGACAAAATAGATGGCATAGCCTTGAAAAAATGGTGGTTAGAGTTGACCACTTCCCAAGCCAATGGAAATGTGCAGAATTATAGAATCCTTAAACCAAACAAGGCAGAAAATGAAGTGACATTGTACCGTCCCATTAGTTTGTTGTCAATCATTTTCTAAAGTATTTAAAAATAATTTAAAGAGAATGTTGTCACTCTTGAAGAATTGCATATCATACCCAAACACCAGTTTGATTCGAAGAGCCACGGAAACCCTGAGCAATGTCACAGGATTAAAATGAAATTTCGTCAGCATTTGAGAGCAAAAATACTGCACTGCTAAATTTTTGACGTTTAACAAGCGTTTGATCGAGTCTGGCATGATGGCTATCATATAAAACCATTTTATATTCTGTATGCTCCATACATCCCGGTAAGGGATTGCGAGAAATTTGAAATCCATTAACACCTTCCAGAAGGTAGCGATCATTTTGAGAACTTTGCTTATGACATAGGGTCCTTTATGCTTTGGAATTAACTTCTTAGCTATGCCTGTTGTTGAGTCAAAATTTTTAACCATGACGTAGTCGCCTTTTGTGAACACTCCTGATCGTTTTCGTTTTTTGTCAACATATTCTTTATTGTATGCTTGTGCTATTTTCTGACTTGCCTCGCCTTTATTTCTAATACTTTCTAAATCTCTTTCTTCAATCGTTTCTCCAATTTCCTCAATTTTTTCTTTTAACTCATCCATAATTTGTCCTTTTTGTTGTAAACCAAATAACATTATGCTAGGATACTGTTTAATGCTGCGGTGTTGTGCATTGTTCAGGGGTATATTCGACCTTTTCGAAGACTAAGTCCCAGTGTAGACCTTGATCAGGTTCAATTAACTTGCTAATCATTGGACCAAGACTTCGGCTTATACGTTCAACTTGACCGTTGGCTTGTGGCGATCCTGTTGCAATTTTTATGTGTTTAACATTGCATTCTTTCAAAAATGAGTCAAAATCGCCAGACGTGAAACATGCTCCTCTATCTGATATGATACACTTAGGCCAACTGTATGCTCGACTTCTTTTAACGACTTCTTTTGTGTTCGTAGTTTTTGTTGCGTATAGTCTGACAAACTTTGTGAATGCATCTACTATCACTAGAATATGTTTCTTCGGTCTACCCAAGTCTACTGGACCATAATGGTCAATATGGATGATTTCAAAGGTTTGTTTCCCTTAGGTATGTTGTGTAGAAATCCTTCTGTTTTTCCTGTTTTGGGACTGAATAAAATACATTTTAAACAGTTGCTGATATGTGTGCTACA'..b'ACCCGTTTTCAGGATTAGCGCCTCAGGTTTTTTGCGCAGGCGCTTGGGCTTCACCTTAGCCCATTCCTCGTCCTTGTTAGCGTCCTTGGCGACAGACGCATAACTTTCCGGTTTGGAGTCAGCCGTCGTGGGTAACGCCTTACCGGTGGATTTCGCGGCAGATCGATGGTTGTCCGTTTTGCGGACCTGCACATTCGGTAATGCCTGTCTGGGTAGCGCCACCTGGCTGCGCTTTGTTTTTTCTGCCTCAGTCTGTGTGGCGAGTACTCGGTGGGGGGGCTTCTTGTTGATACCCTCCTGTAACTCAATCGCTCTGTTATTGAGCGCCGATAGGTCCACTAGCACGCCCCTATCCTCGCTGGTTACGTGACGCCTAGTCTCGAACGAGGATAGAATGGCGGTGATCTTGGCTTTCATCATGTCCAGGATGCCCTGCAGGTCCTCATTCTGGAGCGTCGTGGTCAGTTCTGGCGAGCGATGCGGCGATCCTGATGGGACTTCGCTCCCGCCCTTTGGGCCGGCACGCTGATGAAATCCATTGTCTTCAGGCTTGTGGCTGTCGTGGAGACTGTAGTGGCCAGAGTCTCCACCTCCACAGCTGCACTGCAGTCGCTAGCTTTCGGCGGCGGGGGGGCCTGCTTGCTCACCTCCCACTCCCTGGATTGGGGTTCCGACTCCTCTTATGGGGATCTCGATAGCCTACCACTCCTCCTAAACGGGTCGTTGGGGTCGGGGCACTGCCCCTGTGCTGTCCATCAGATATAAAGGGGGGACTTTGGCTTGTTGGTCCCCAGCGCTCCGTGGGAAATAGAACTAGCTTCAGTTCTTAGGTTATATTTAAAATTTTTGTTCAACTAATTAGTTCAAATTTGAATTTGAATTCGAATTTCGCGCCCAACGAGCGCGCGGCCGAATGACGATCGCACCGCTGATCTGGCAACGCCAGTCTTACCAGCTCGTCGACTGCGAAGGTTGGCAATGCTATCAGCTGTATTGTCTGATGCAGCTGATCTGATTTATTACCAGTTTACTGGATCACTCGTGAATTCGGAACGACACCGTGACGCTCAGAAACGCGGCGCAAACCCCAGAGTGGATTTGCGGGTTTATGTTGCAGTTTACGGCTGACCGGACTCGTATATGACGAAATTCGCGCAGCGCAGCAAAAGACGTGCGAAATACGCGGGAACTCGATTCACTATCATGCCATAATGTGTGTTGGTATTAGTGTGTGTGTGGAGTGAAGTAAGTCTCCAAAGTGTGTTTGATTGCGGGTAGACTGGGTTCTACGCATTATTGCAACGTTCGTTCTGCACATTAAGTTTTGATCGCCGAAGAAGACAGACATGCCTCGCTCCCGAATTAAACGCGTCAGAAAACGTTACGACGACGGGTGAGAGTGATGCTGAGTATAAAAGTGATTCAGATCCCACATACTTAATGCAAATAAGTTTATTTTCAACTTTTTCTATTGTAAAATGATATTTTATGTCTATGTGCTTAATTCTCTTGTGGCAAGTTGGGTTATTTGCAATACTAATGCAACCTGGACCTTTTAATTCTAGTTTAATTTCTACCAATAAAAACTTGAGCCATAAGGCTTCTCTAAAACCTTCAAATAAGGCCATGTAATCTGTCTTCGGTGGATGAAGCTGCAACTGATTTTTGCTTCATTGTGTTCCATGAAATTAAACAACTTTCAAACAGTTTAAATAAATATCCAGTAGTACTTCGTCTGTCTGTCTCATTTCCTGCCCAATCAGAATCAGCATGTCCAATAAGAATAATACTAAACTGTACACTTTTTCAATCTCAAATCAACAGTTCCTTTTAAATGCCTTAAAACTCTTTTAAGGCATAGCCATAATTCCTTATTGTTGTTATTCGAATATCGACTTAAAATACTTATTGATCAAGTTTCTACATGGTGCCTCACATGATTCTACAGATTGTAGAGCCTCATAGTTTAGTTTGCTTGGAAGAGGTGTACTAACTGCATTACAGTCTTCCATATTAAACTTTTCAACACATTCTTTATATATGCAGATTAACTGAGACATATCTGACTTTTATTTCTATCAATTTTAATTCCGATAAAATATCGAACTTCCTTCAAATAAGTCATTTTAAATTTATTTAGAAGGTATGATTTAAATTTAGACCTAGTTTCGGATTTACTAAGTGGCAATTATTACATCGTCCACATATAACAAAATATAGATATTATCTAAGAATTTTCCTTTATCTAATATAAATTAGATTTTCAAATACAACATCTTTTCGCACATTTTCAAAACTTCAAACCAGCATCTTGCAGCTTGTTTACTGCATATTTTGCTTTATTAAGCTTTGCATTCTGCATTCTCATCGCAATATGGCAACCCTTTTGGAACCTTCATGTAGATTTCATCTTGCTCCAAGAATGCTGTTCTCACATCCATACGATGGACTTGTAAATTTTATTGATTTGAAAGAGCCAAAAAACCGAAACTGGAAATTCGTGCAGCTGGTGCAAATGTCTCATCATAATCAGTCACATATTCTTGTGTAAACCTCGTGCTACTAGCCGTGCTTTATGCTACTAAGTTTCCAAACTCATCTTGTTAGTGCTACTAAAAACCCATTTACAATCTACTATGCTTTTATTATTAGGCTTCTGCACCAAACTCCACGTTTTATTTTCTGAATGTGAACCAAGTTCATCTTGTATAGCTTTTCCCAAAAGATCTGTCATCCACGAAATTCAATTTCATCAAATCTATTGGGAATATCAATATCTATCGATAGTTTAGGTTTATCTTTGTCCAAGTTACGGGGTTGGACTGTCACCGCTCTCCGCTCCCTTTACGCTCTCCGCTCTTCACCACAGAGTCTCCAAGGAGTCTCCGCTGCGCTTGGAAGAGCCTAACTAGATAGAATAAGCACCAGTGTCAAAACTCATTTCGCAGAATAAATATACGCCCGGTCGCGCAATCTACGAAAGTCTAGTGTTCGCTTTTCTTCGAGAGTTTCTTTTCAGCATATTTGGAAAATTCCAGGACAGCACCCTACAACCCATCATTTTTTATTTCTTTCACTGCGTCTGATTTCTTACTCACTTTTGCTATCATTTATTTCATCACCAGTTTCTTTAACTGGATCGGCATTCTTTAGACATGTGGAATTTTACTATGTTGTACATTTTTCTAGAATCAACAGATTCATCATTTTCCACCATTGGAAAATCGAGCTCTACATTATCTTTATTAAAAGAATCATAAATACTTTTATGTTGAACCTTCGAGTCTTCTTCATGTTTTAATTCGTTTGTCATCTCGATCACCGAATCGTATCTCGCTTTCAAGCCTCATCTCTTTTAGACGCTGCTCATTTCTTAAGAACTGAGCCAACTGCGAAACAGACCTAGAATGCCTAGCCCGGAACCGATATGTTCGGGGTCGCTTGAAAAGGCAGAGTAACGACATATTTGCTGCACTCGTTTCTCGTGAGTCGTTGAGAGAATTCTTCTCGCACGAGATCGGATTCTTTTGCAGCTTTGTTGGTATATGTCCTCGCAGATTTCTGCTGAGGAGTTTGTCCAGTGAATTATCGTACGCGTGGGAGATCTGCGTCGAAAGAGAAATTCTACTTGGGCTGGGCTGACACTGGCCCAGTTAGTACCCAGCGAAAGTATGGTCTCTTGCCCGCCCCAAGAGAGAGCGCAGATGTTGGTTTTGCTAACCCTCCAGAGCACCGGAGAGGAGGATGTCGGCTCCGATAAGTACATCTATTTGTGCGCTCTCATAGAATTTTGGATCCGCCAGTGGAAAATCGGGAAGATCCCGAAGGGAAGAGGAAGGTAGGAAGACGCTTCCGGCGCTGGTTGAGGGGAGGACGCAGGCCGTCGTCTCCAACTGCAACGCAGGCTAGTCGGAGATCCGGATGAACTTCACAGAGCTTCTTGGACTGAGCAGCTACTGTTTGCTTTAAAGCCCGGAAGCAATGTGGCAC\tdp:i:32\n' |
| b |
| diff -r 8d4f03b5fe9d -r e27815e82dd4 test-data/result4_assembly_info.txt --- a/test-data/result4_assembly_info.txt Mon Jun 21 08:37:37 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,2 +0,0 @@ -#seq_name length cov. circ. repeat mult. graph_path -contig_1 35685 36 - - 1 *,1,* |