| Previous changeset 1:8e9d604e92f4 (2020-01-21) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gfa_to_fa commit 83aed19c6cdf00f3133eb80a69cba0074ca244cc" |
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modified:
gfa_to_fa.xml |
| b |
| diff -r 8e9d604e92f4 -r e33c82b63727 gfa_to_fa.xml --- a/gfa_to_fa.xml Tue Jan 21 18:55:34 2020 -0500 +++ b/gfa_to_fa.xml Wed Mar 03 17:17:49 2021 +0000 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="gfa_to_fa" name="GFA to FASTA" version="0.1.1"> +<tool id="gfa_to_fa" name="GFA to FASTA" version="0.1.2"> <description>Convert Graphical Fragment Assembly files to FASTA format </description> <command detect_errors="exit_code"><![CDATA[ cat '$in_gfa' | python '$convert' > '$out_fa' @@ -9,13 +9,13 @@ import sys for line in sys.stdin: if line.startswith("S"): - l,h,s,x = line.strip().split() + l,h,s = line.strip().split('\t')[:3] print(">" + h) print(s) ]]></configfile> </configfiles> <inputs> - <param name="in_gfa" type="data" format="tabular" label="Input GFA file" /> + <param name="in_gfa" type="data" format="tabular,gfa1" label="Input GFA file" /> </inputs> <outputs> <data name="out_fa" format="fasta" label="${tool.name} on ${on_string}: Fasta file" /> |