| Previous changeset 0:46a582eb1ea9 (2016-05-11) Next changeset 2:2843d0da7f20 (2016-05-11) |
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Commit message:
Uploaded |
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added:
nsaf_scoring.xml |
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| diff -r 46a582eb1ea9 -r e3625c710dd3 nsaf_scoring.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/nsaf_scoring.xml Wed May 11 10:51:03 2016 -0400 |
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| @@ -0,0 +1,38 @@ +<tool id="nsaf_scoring" name="NSAF Scoring Table"> + <description></description> + <command interpreter="python">nsaf_scoring.py $list_file $prey_file $crapome $inter_file $outfile \$INSTALL_RUN_PATH/ </command> + <requirements> + <requirement type="set_environment">INSTALL_RUN_PATH</requirement> + </requirements> + <inputs> + <param format="txt" name="list_file" type="data" label="List File"/> + <param format="txt" name="prey_file" type="data" label="Prey File"/> + <param format="txt" name="crapome" type="data" label="Crapome File" optional="true"/> + <param format="txt" name="inter_file" type="data" label="Inter File" /> + </inputs> + <outputs> + <data format="txt" name="outfile" label="NSAF Scored Table"/> + </outputs> + <stdio> + <regex match="ValueError: 'PreyGene' is not in list" + source="stdout" + level="fatal" + description="Error: Check Input file."/> + <regex match="Error|error" + source="stdout" + level="fatal" + description="Unknown error"/> + <regex match="Error|error" + source="stderr" + level="fatal" + description="Unknown error"/> + </stdio> + <tests> + <test> + <param name="input" value="fa_gc_content_input.fa"/> + <output name="out_file1" file="fa_gc_content_output.txt"/> + </test> + </tests> + <help> + </help> +</tool> \ No newline at end of file |