| Previous changeset 11:1a6fa343b981 (2014-02-07) Next changeset 13:c91d0d09cb0c (2015-02-18) |
|
Commit message:
added comment |
|
modified:
masscomb_dbsearch_converter.xml |
| b |
| diff -r 1a6fa343b981 -r e38e97bc902d masscomb_dbsearch_converter.xml --- a/masscomb_dbsearch_converter.xml Fri Feb 07 15:55:38 2014 +0100 +++ b/masscomb_dbsearch_converter.xml Fri Jan 23 15:45:50 2015 +0100 |
| b |
| @@ -45,7 +45,7 @@ <param name="inputFile" type="data" format="omx" label="MS/MS search results"/> </when> <when value="proteomediscoverer_pepxml"> - <param name="inputFile" type="data" format="pepxml" label="MS/MS search results (pepxml)"/> + <param name="inputFile" type="data" format="any" label="MS/MS search results (pepxml)"/> </when> </conditional> </when> @@ -70,7 +70,11 @@ </conditional> <param name="outputMsMsFragmentationData" type="boolean" checked="false" label="Output MS/MS fragmentation data" - help="NB: this will add to the output also the fragment ions related to each peptide identification"/> + help="NB: this will add to the output also the fragment ions related to each peptide identification. + NB2: Fragment ion annotation data is + inferred based on new calculations triggered by this conversion tool. + This is done because fragment ion annotation information is not present + in X!Tandem file (X!Tandem SLEDGEHAMMER (2013.09.01) and previous)"/> </inputs> <outputs> |