| Previous changeset 53:d6c77b334379 (2017-01-06) Next changeset 55:942ea15453f7 (2017-01-06) |
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Commit message:
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modified:
tool_dependencies.xml |
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| diff -r d6c77b334379 -r e3e1433812a6 tool_dependencies.xml --- a/tool_dependencies.xml Fri Jan 06 14:18:01 2017 -0500 +++ b/tool_dependencies.xml Fri Jan 06 14:58:22 2017 -0500 |
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| @@ -1,16 +1,15 @@ <tool_dependency > <!-- https://wiki.galaxyproject.org/ToolDependenciesTagSets --> <actions> + <action type="shell_command">echo 'starting tool dependency script'</action> <action type="change_directory">/shed_tools/toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm/*/ngchm/</action> - <action type="chmod"><file mode="755">./NGCHMHeatmap/*</file></action> - <action type="move_directory_files"><source_directory>./NGCHMHeatmap/</source_directory><destination_directory>$GALAXY_ROOT/config/plugins/visualizations</destination_directory></action> + <action type="chmod"><file mode="755">./MDAHeatmap/*</file></action> <!--##### Place MDA software in Tools and Visualization directories ##### --> - <action type="shell_command">mv ./mda_heatmap_viz/ /$GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/ </action> - <action type="shell_command">chmod 777 /$GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/ </action> -<!-- ##### Place MDA test input and output files in ~/test-data directory ##### --> - <action type="shell_command">mv ./ngchm-matrix-functional-test-data/400x400.txt /$GALAXY_ROOT/test-data/</action> - <action type="shell_command">mv ./ngchm-matrix-functional-test-data/400x400-row-covariate.txt /$GALAXY_ROOT/test-data/</action> - <action type="shell_command">mv ./ngchm-matrix-functional-test-data/400x400-column-covariate.txt /$GALAXY_ROOT/test-data/</action> - <action type="shell_command">mv ./ngchm-matrix-functional-test-data/Galaxy400x400-noCovariates.ngchm /$GALAXY_ROOT/test-data/</action> + <action type="shell_command">echo 'Place MD Anderson test input and output files in ~/test-data directory'</action> + <action type="shell_command">mkdir $GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</action> + <action type="move_directory_files"><source_directory>./MDAHeatmap/</source_directory><destination_directory>$GALAXY_ROOT/config/plugins/visualizations/mda_heatmap_viz/</destination_directory></action> +<!-- ##### Place MD Anderson test input and output files in ~/test-data directory ##### --> + <action type="shell_command">echo 'Place MD Anderson software in test data directories'</action> + <action type="move_directory_files"><source_directory>./TestFiles/</source_directory><destination_directory>$GALAXY_ROOT/test-data/</destination_directory></action> </actions> </tool_dependency> |