| Previous changeset 6:d0bb240d7525 (2016-07-13) Next changeset 8:3437d5a5041c (2016-09-23) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 15099b938e3ef54150ebf6b67969c27928c763c0 |
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modified:
stringtie.xml |
| b |
| diff -r d0bb240d7525 -r e3f369973054 stringtie.xml --- a/stringtie.xml Wed Jul 13 14:48:26 2016 -0400 +++ b/stringtie.xml Mon Jul 18 06:50:04 2016 -0400 |
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| @@ -79,25 +79,25 @@ <outputs> <data format="gtf" label="${tool.name} on ${on_string}: Assembled transcripts" name="output_gtf" /> <data format="gtf" label="${tool.name} on ${on_string}: Gene abundance estimates" name="gene_abundance_estimation"> - <filter>option_set['abundance_estimation']</filter> + <filter>option_set['options'] == 'advanced' and option_set['abundance_estimation']</filter> </data> <data format="gff3" label="${tool.name} on ${on_string}: Coverage" name="coverage"> - <filter>guide['use_guide'] == "yes"</filter> + <filter>guide['use_guide'] == 'yes'</filter> </data> <data format="tabular" from_work_dir="e_data.ctab" label="${tool.name} on ${on_string}: exon-level expression measurements" name="exon_expression"> - <filter>guide['output_ballgown']</filter> + <filter>guide['use_guide'] == 'yes' and guide['output_ballgown']</filter> </data> <data format="tabular" from_work_dir="i_data.ctab" label="${tool.name} on ${on_string}: intron-level expression measurements" name="intron_expression"> - <filter>guide['output_ballgown']</filter> + <filter>guide['use_guide'] == 'yes' and guide['output_ballgown']</filter> </data> <data format="tabular" from_work_dir="t_data.ctab" label="${tool.name} on ${on_string}: transcript-level expression measurements" name="transcript_expression"> - <filter>guide['output_ballgown']</filter> + <filter>guide['use_guide'] == 'yes' and guide['output_ballgown']</filter> </data> <data format="tabular" from_work_dir="e2t.ctab" label="${tool.name} on ${on_string}: exon to transcript mapping" name="exon_transcript_mapping"> - <filter>guide['output_ballgown']</filter> + <filter>guide['use_guide'] == 'yes' and guide['output_ballgown']</filter> </data> <data format="tabular" from_work_dir="i2t.ctab" label="${tool.name} on ${on_string}: intron to transcript mapping" name="intron_transcript_mapping"> - <filter>guide['output_ballgown']</filter> + <filter>guide['use_guide'] == 'yes' and guide['output_ballgown']</filter> </data> </outputs> <tests> @@ -204,4 +204,3 @@ </help> <expand macro="citations" /> </tool> - \ No newline at end of file |