| Previous changeset 42:bf05cda04e1f (2016-07-08) Next changeset 44:f8cfca91827a (2016-07-08) |
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Commit message:
planemo upload |
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modified:
data_manager_gene_annotation/data_manager/data_manager.py data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml data_manager_gene_annotation/data_manager_conf.xml |
| b |
| diff -r bf05cda04e1f -r e42284a13168 data_manager_gene_annotation/data_manager/data_manager.py --- a/data_manager_gene_annotation/data_manager/data_manager.py Fri Jul 08 14:33:30 2016 -0400 +++ b/data_manager_gene_annotation/data_manager/data_manager.py Fri Jul 08 14:45:18 2016 -0400 |
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| @@ -65,7 +65,7 @@ 'value': gene_annotation_file_name.split(".")[0], 'dbkey': gene_annotation_file_name.split(".")[0], 'name': name, - 'path': os.path.join(work_dir, gene_annotation_file_name) + 'path': gene_annotation_file_name } } } |
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| diff -r bf05cda04e1f -r e42284a13168 data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml --- a/data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml Fri Jul 08 14:33:30 2016 -0400 +++ b/data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml Fri Jul 08 14:45:18 2016 -0400 |
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| @@ -17,9 +17,9 @@ </command> <inputs> <param - help="Enter a unique identifier for the Data Table column to be created, or leave blank for an auto-generated uuid" label="Identifier for this DataTable entry" name="database_name" type="text" optional="True" /> + help="Enter a descriptive name to be used in the tool drop-down menus" label="Identifier for this DataTable entry" name="database_name" type="text" optional="True" /> <param - label="Enter URL pointing to a remote .gtf file" name="gene_annotation_url" type="text" optional="False"/> + label="Enter URL pointing to a remote GTF/GFF file" name="gene_annotation_url" type="text" optional="False"/> </inputs> <outputs> <data format="data_manager_json" name="out_file" /> |
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| diff -r bf05cda04e1f -r e42284a13168 data_manager_gene_annotation/data_manager_conf.xml --- a/data_manager_gene_annotation/data_manager_conf.xml Fri Jul 08 14:33:30 2016 -0400 +++ b/data_manager_gene_annotation/data_manager_conf.xml Fri Jul 08 14:45:18 2016 -0400 |
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| @@ -10,9 +10,10 @@ <column name="path" output_ref="out_file"> <move type="file"> <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gene_annotations/${name}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}"> + gene_annotations/${path}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gene_annotations/${name}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gene_annotations/${path}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> |