| Previous changeset 5:befc9dad4ca8 (2021-11-27) Next changeset 7:ddb22028b552 (2023-01-13) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/bamtools/bamtools commit 29fe5251fcc37a22a1ce479d7a39f5007a4f02ec |
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modified:
bamtools.xml macros.xml |
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| diff -r befc9dad4ca8 -r e4490b16f0d7 bamtools.xml --- a/bamtools.xml Sat Nov 27 10:02:03 2021 +0000 +++ b/bamtools.xml Wed Jan 11 08:14:24 2023 +0000 |
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| @@ -4,9 +4,10 @@ <macros> <import>macros.xml</import> </macros> - <expand macro="requirements" /> - <command detect_errors="exit_code"> - <![CDATA[ + <expand macro="requirements"> + <requirement type="package" version="1.16.1">samtools</requirement> + </expand> + <command detect_errors="exit_code"><![CDATA[ ##set up input files ln -s '${input_bams}' localbam.bam && ln -s '${input_bams.metadata.bam_index}' localbam.bam.bai && @@ -60,8 +61,7 @@ -out '$out_file1' #end if -in localbam.bam - ]]> - </command> + ]]></command> <inputs> <param name="input_bams" type="data" format="bam" label="BAM dataset(s) to filter" /> <conditional name="analysis_type"> |
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| diff -r befc9dad4ca8 -r e4490b16f0d7 macros.xml --- a/macros.xml Sat Nov 27 10:02:03 2021 +0000 +++ b/macros.xml Wed Jan 11 08:14:24 2023 +0000 |
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| @@ -1,11 +1,11 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">2.5.1</token> + <token name="@TOOL_VERSION@">2.5.2</token> <token name="@VERSION_SUFFIX@">0</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">bamtools</requirement> - <requirement type="package" version="1.4.1">samtools</requirement> + <yield /> </requirements> </xml> <xml name="citations"> @@ -13,4 +13,4 @@ <citation type="doi">10.1093/bioinformatics/btr174</citation> </citations> </xml> -</macros> \ No newline at end of file +</macros> |