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Changeset 0:e46a7803f17b (2015-09-21)

Next changeset 1:fae49a02a848 (2015-11-04)

Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_2_1 commit 1ddb71f5953e86441c06326980abd33168087e50

added:
tool_dependencies.xml

diff -r 000000000000 -r e46a7803f17b tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Mon Sep 21 10:22:04 2015 -0400

b'@@ -0,0 +1,115 @@\n+<?xml version="1.0"?>\n+<tool_dependency>\n+ <package name="R" version="3.2.1">\n+ <install version="1.0">\n+ <actions_group>\n+ <actions architecture="x86_64" os="linux">\n+ <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/R/R-3.2.1-Linux-x86_64.tar.gz</action>\n+ <action type="move_directory_files">\n+ <source_directory>.</source_directory>\n+ <destination_directory>$INSTALL_DIR</destination_directory>\n+ </action>\n+ <action type="set_environment">\n+ <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable>\n+ <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable>\n+ </action>\n+ </actions>\n+ <actions>\n+ <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz</action>\n+ <package name="atlas" version="3.10.2">\n+ <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+ </package>\n+ <package name="readline" version="6.3">\n+ <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+ </package>\n+ <package name="libpng" version="1.6.7">\n+ <repository changeset_revision="05df724aefbb" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+ </package>\n+ <package name="cairo" version="1.12.14">\n+ <repository changeset_revision="84c45dea6b9e" name="package_cairo_1_12_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+ </package>\n+ <package name="pixman" version="0.32.6">\n+ <repository changeset_revision="b67e27ea8bd3" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+ </package>\n+ <package name="freetype" version="2.5.2">\n+ <repository changeset_revision="831c84793e0f" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+ </package>\n+ <package name="ncurses" version="6.0">\n+ <repository changeset_revision="c921f7ce9ca7" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+ </package>\n+ <package name="fontconfig" version="2.11.1">\n+ <repository changeset_revision="b20e4c53891e" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />\n+ </package>\n+ <action type="set_environment_for_install">\n+ <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">\n+ <package name="readline" version="6.3" />\n+ </repository>\n+ <repository changeset_revision="05df724aefbb" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">\n+ <packag'..b' export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" && \n+ export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" &&\n+ export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" &&\n+ export LDFLAGS="$LDFLAGS -Wl,-rpath,$LIBPNG_LIB_PATH" &&\n+ export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" &&\n+ export LDFLAGS="$LDFLAGS -Wl,-rpath,$FONTCONFIG_LIB_PATH" &&\n+ export LDFLAGS="$LDFLAGS -Wl,-rpath,$CAIRO_LIB_PATH" &&\n+ export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" &&\n+ export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" &&\n+ export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" &&\n+ ./configure --with-tcltk \\\n+ --with-blas \\\n+ --with-lapack \\\n+ --with-readline \\\n+ --with-cairo \\\n+ --with-libpng \\\n+ --without-x \\\n+ --enable-R-shlib \\\n+ --disable-R-framework \\\n+ --libdir=$INSTALL_DIR/lib \\\n+ --prefix=$INSTALL_DIR \n+ </action>\n+ <action type="make_install" />\n+ <action type="shell_command">sed -i.bak -e \'s;$INSTALL_DIR;\\${R_ROOT_DIR};g\' $INSTALL_DIR/bin/R</action>\n+ <action type="shell_command">sed -i.bak -e \'s;$INSTALL_DIR;\\${R_ROOT_DIR};g\' $INSTALL_DIR/lib/R/bin/R</action>\n+ </actions>\n+ <action type="set_environment">\n+ <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable>\n+ <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable>\n+ <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable>\n+ <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable>\n+ <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable>\n+ <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>\n+ <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>\n+ <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>\n+ <environment_variable action="set_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>\n+ <environment_variable action="set_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>\n+ <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>\n+ </action>\n+ </actions_group>\n+ </install>\n+ <readme>\n+ The precompiled versions of this package were built 2015-07-27.\n+ R is a free software environment for statistical computing and graphics.\n+ NOTE: See custom compilation options above.\n+ </readme>\n+ </package>\n+</tool_dependency>\n'