| Previous changeset 3:a6d1f83c46b4 (2021-01-19) Next changeset 5:b768cc4cca40 (2022-08-18) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chromeister commit bf4cb96e27bcbdac59321f00669f4efd6013ee44" |
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modified:
chromeister.xml |
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added:
test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.csv test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.events.txt test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.filt.png test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.scr.txt |
| b |
| diff -r a6d1f83c46b4 -r e483be1014b6 chromeister.xml --- a/chromeister.xml Tue Jan 19 11:14:38 2021 +0000 +++ b/chromeister.xml Wed Apr 14 06:07:06 2021 +0000 |
| b |
| @@ -68,7 +68,7 @@ <tests> <!-- test run w defaults (and non default for dimension) --> - <test expect_num_outputs="5"> + <test expect_num_outputs="6"> <param name="query" value="mycoplasma-232.fasta"/> <param name="db" value="mycoplasma-7422.fasta"/> <param name="dimension" value="500"/> @@ -85,7 +85,7 @@ </assert_command> </test> <!-- test run w non defaults (and default for dimension) --> - <test expect_num_outputs="5"> + <test expect_num_outputs="6"> <param name="query" value="mycoplasma-232.fasta"/> <param name="db" value="mycoplasma-7422.fasta"/> <param name="kmer" value="16"/> @@ -124,7 +124,7 @@ </assert_command> </test> <!-- test to check grid --> - <test expect_num_outputs="5"> + <test expect_num_outputs="6"> <param name="query" value="mycoplasma-232.fasta"/> <param name="db" value="mycoplasma-7422.fasta"/> <param name="dimension" value="500"/> @@ -149,11 +149,6 @@ <param name="dimension" value="1000"/> <param name="grid" value=""/> <param name="pngevents" value="pngevents"/> - <output name="output"/> - <output name="output_imagen"/> - <output name="output_csv"/> - <output name="output_events"/> - <output name="output_score"/> <output name="output_events_png"> <assert_contents> <has_text text="PNG"/> |
| b |
| diff -r a6d1f83c46b4 -r e483be1014b6 test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat Wed Apr 14 06:07:06 2021 +0000 |
| b |
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| b |
| diff -r a6d1f83c46b4 -r e483be1014b6 test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.csv Wed Apr 14 06:07:06 2021 +0000 |
| b |
| @@ -0,0 +1,8 @@ +mycoplasma-7422.fasta (Y-Axis) +ID,header_name,length (bp),accumulated_length +1,gi|525903163|ref|NC_021831.1|,898495,898495 +# +mycoplasma-232.fasta (X-Axis) +ID,header_name,length (bp),accumulated_length +1,gi|54019969|ref|NC_006360.1|,892758,892758 +# |
| b |
| diff -r a6d1f83c46b4 -r e483be1014b6 test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.events.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.events.txt Wed Apr 14 06:07:06 2021 +0000 |
| b |
| @@ -0,0 +1,17 @@ +xStart,yStart,xEnd,yEnd,strand,approximate length,description +471376,646916,614217,503157,f,142841,transposition +760629,803254,796340,767314,f,35711,conserved block +0,21563,21426,0,f,21426,conserved block +105345,217435,244615,357601,r,139270,inverted transposition +389242,425886,408883,406119,f,19641,transposition +728490,761923,757058,733171,f,28568,conserved block +685638,742156,730276,697232,f,44638,conserved block +789198,896698,890972,794269,f,101774,conserved block +232117,154541,308894,231811,r,76777,inverted transposition +10713,100631,101774,8984,f,91061,conserved block +307108,104225,335677,132977,r,28569,inverted transposition +376743,411510,396384,391743,f,19641,conserved block +396384,501360,482089,415104,f,85705,transposition +616003,690044,657069,648713,f,41066,transposition +326749,102428,341033,116804,r,14284,inverted transposition +346390,382758,367816,362991,f,21426,transposition |
| b |
| diff -r a6d1f83c46b4 -r e483be1014b6 test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.filt.png |
| b |
| Binary file test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.filt.png has changed |
| b |
| diff -r a6d1f83c46b4 -r e483be1014b6 test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.scr.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mycoplasma-232.fasta-mycoplasma-7422.fasta.scr.txt Wed Apr 14 06:07:06 2021 +0000 |
| b |
| @@ -0,0 +1,1 @@ +0.048 |
