| Previous changeset 0:ac7d8e55bb67 (2015-10-21) Next changeset 2:ebfc73c72652 (2016-02-03) |
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Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 450d1b3d954cc7d96e53652d468811546951f995 |
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modified:
readmap.xml tool_dependencies.xml |
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added:
smRtools.pyc |
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| diff -r ac7d8e55bb67 -r e4874d1ae69d readmap.xml --- a/readmap.xml Wed Oct 21 11:13:18 2015 -0400 +++ b/readmap.xml Thu Nov 26 11:56:07 2015 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.0.4"> +<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.0.5"> <description>from sRbowtie aligment</description> <requirements> <requirement type="package" version="0.12.7">bowtie</requirement> @@ -157,8 +157,10 @@ ## GRAPHS if (n_genes > 7) {page_height_simple = 11.69; page_height_combi=11.69; rows_per_page=${rows_per_page}; extrarow=0 } else { - rows_per_page= n_genes; page_height_simple = 11.69/n_genes/4; page_height_combi=11.69/(n_genes*2); extrarow=1 } - if (n_samples > 4) {page_width = 8.2677*n_samples/4} else {page_width = 8.2677*n_samples/3} # to test + rows_per_page= 8; page_height_simple = 11.69; page_height_combi=11.69; extrarow=0 } + ## rows_per_page= 8; page_height_simple = 11.69/7*n_genes; page_height_combi=11.69/9*(n_genes*2); extrarow=0 } + ## rows_per_page= n_genes; page_height_simple = 11.69/n_genes/4; page_height_combi=11.69/(n_genes*2); extrarow=1 } + if (n_samples > 4) {page_width = 8.2677*n_samples/4} else {page_width = 8.2677*n_samples/3} # to test pdf(file="${readmap_PDF}", paper="special", height=page_height_simple, width=page_width) for (i in seq(1,n_genes,rows_per_page)) { |
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| diff -r ac7d8e55bb67 -r e4874d1ae69d smRtools.pyc |
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| Binary file smRtools.pyc has changed |
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| diff -r ac7d8e55bb67 -r e4874d1ae69d tool_dependencies.xml --- a/tool_dependencies.xml Wed Oct 21 11:13:18 2015 -0400 +++ b/tool_dependencies.xml Thu Nov 26 11:56:07 2015 -0500 |
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| @@ -10,7 +10,7 @@ <repository changeset_revision="9cc1138e5e3e" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="R" version="3.1.2"> - <repository changeset_revision="9f2fddb9d6e2" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c987143177d4" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="biocbasics" version="2.14"> <repository changeset_revision="f0ef1a7b157e" name="package_biocbasics_2_14" owner="mvdbeek" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |