| Next changeset 1:ee143f73fee0 (2016-01-25) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_hmmer_3_1b1 commit 261c6a4ae771a24a27a23cd808a4ae6e5248939b |
|
added:
tool_dependencies.xml |
| b |
| diff -r 000000000000 -r e49dc46333e2 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Oct 01 11:13:06 2015 -0400 |
| b |
| @@ -0,0 +1,39 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="hmmer" version="3.1b1"> + <install version="1.0"> + <actions> + <action type="download_by_url">ftp://selab.janelia.org/pub/software/hmmer3/3.1b1/hmmer-3.1b1.tar.gz</action> + <action type="autoconf" /> + <action type="change_directory">easel/miniapps/</action> + <action type="make_install" /> + <action type="set_environment"> + <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable> + <environment_variable name="C_INCLUDE_PATH" action="prepend_to">$INSTALL_DIR/include</environment_variable> + <environment_variable name="CPLUS_INCLUDE_PATH" action="prepend_to">$INSTALL_DIR/include</environment_variable> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> +HMMER is used for searching sequence databases for homologs of protein +sequences, and for making protein sequence alignments. It implements methods +using probabilistic models called profile hidden Markov models (profile HMMs). + +Compared to BLAST, FASTA, and other sequence alignment and database search +tools based on older scoring methodology, HMMER aims to be significantly more +accurate and more able to detect remote homologs because of the strength of its +underlying mathematical models. In the past, this strength came at significant +computational expense, but in the new HMMER3 project, HMMER is now essentially +as fast as BLAST. + +As part of this evolution in the HMMER software, we are committed to making the +software available to as many scientists as possible. Earlier releases of HMMER +were restricted to command line use. To make the software more accessible to +the wide scientific community, we now provide servers that allow sequence +searches to be performed interactively via the Web. + +http://hmmer.janelia.org/ + </readme> + </package> +</tool_dependency> |