| Previous changeset 2:0fba45ac3987 (2017-01-13) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasta_nucleotide_color_plot commit ea2c53b2c83e61350bf471981d850fa061bf5512 |
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modified:
fasta_nucleotide_color_plot.xml |
| b |
| diff -r 0fba45ac3987 -r e4b5401adcec fasta_nucleotide_color_plot.xml --- a/fasta_nucleotide_color_plot.xml Fri Jan 13 10:19:56 2017 -0500 +++ b/fasta_nucleotide_color_plot.xml Fri Jun 16 11:58:18 2017 -0400 |
| [ |
| @@ -6,40 +6,38 @@ <macros> <import>macros.xml</import> </macros> - <command> - <![CDATA[ - java -jar $__tool_directory__/FourColorPlot.jar - -f "$input" - -h $pixel_height - -w $pixel_width - #if str($a_select_color_cond.a_select_color) == "a_rgb": - -A "$a_select_color_cond.a_rgb" - #else: - -A $a_select_color_cond.color_a - #end if - #if str($t_select_color_cond.t_select_color) == "t_rgb": - -T "$t_select_color_cond.t_rgb" - #else - -T $t_select_color_cond.color_t - #end if - #if str($g_select_color_cond.g_select_color) == "g_rgb": - -G "$g_select_color_cond.g_rgb" - #else - -G $g_select_color_cond.color_g - #end if - #if str($c_select_color_cond.c_select_color) == "c_rgb": - -C "$c_select_color_cond.c_rgb" - #else - -C $c_select_color_cond.color_c - #end if - #if str($n_select_color_cond.n_select_color) == "n_rgb": - -N "$n_select_color_cond.n_rgb" - #else - -N $n_select_color_cond.color_n - #end if - -o "$output" 1>/dev/null - ]]> - </command> + <command detect_errors="exit_code"><![CDATA[ +java -jar '$__tool_directory__/FourColorPlot.jar' +-f '$input' +-h $pixel_height +-w $pixel_width +#if str($a_select_color_cond.a_select_color) == "a_rgb": + -A '$a_select_color_cond.a_rgb' +#else: + -A $a_select_color_cond.color_a +#end if +#if str($t_select_color_cond.t_select_color) == "t_rgb": + -T '$t_select_color_cond.t_rgb' +#else + -T $t_select_color_cond.color_t +#end if +#if str($g_select_color_cond.g_select_color) == "g_rgb": + -G '$g_select_color_cond.g_rgb' +#else + -G $g_select_color_cond.color_g +#end if +#if str($c_select_color_cond.c_select_color) == "c_rgb": + -C '$c_select_color_cond.c_rgb' +#else + -C $c_select_color_cond.color_c +#end if +#if str($n_select_color_cond.n_select_color) == "n_rgb": + -N '$n_select_color_cond.n_rgb' +#else + -N $n_select_color_cond.color_n +#end if +-o '$output' 1>/dev/null + ]]></command> <inputs> <param name="input" type="data" format="fasta" label="FASTA file" /> <param name="pixel_height" type="integer" value="2" min="1" label="Pixel height per nucleotide" /> |