Repository 'mitos'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mitos

Changeset 7:e50a4f4542fc (2024-03-23)
Previous changeset 6:ca1142e5df8b (2024-01-25) Next changeset 8:96c36179210e (2024-05-02)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit a3f57ea5cedcf7ceb70ea815e965325fab6cc90c
modified:
mitos.xml
test-data/NC_012920.seq
test-data/mitos2_NC_012920.seq
b
diff -r ca1142e5df8b -r e50a4f4542fc mitos.xml
--- a/mitos.xml Thu Jan 25 16:47:32 2024 +0000
+++ b/mitos.xml Sat Mar 23 14:08:12 2024 +0000
b
@@ -3,7 +3,7 @@
   <macros>
     <import>macros.xml</import>
     <token name="@MITOS_NAME@">MITOS</token>
-    <token name="@TOOL_VERSION@">1.1.5</token>
+    <token name="@TOOL_VERSION@">1.1.6</token>
     <token name="@VERSION_SUFFIX@">0</token>
   </macros>
   <xrefs>
b
diff -r ca1142e5df8b -r e50a4f4542fc test-data/NC_012920.seq
--- a/test-data/NC_012920.seq Thu Jan 25 16:47:32 2024 +0000
+++ b/test-data/NC_012920.seq Sat Mar 23 14:08:12 2024 +0000
b
@@ -39,7 +39,7 @@
  gene trnC(gca)
 5826 5761 tRNA
  product tRNA-CYS
-5826 5761 gene
+ gene rrnS
 5826 5761 rRNA
  product s-rRNA
 5891 5827 gene
@@ -54,7 +54,7 @@
  gene trnD(gtc)
 7518 7585 tRNA
  product tRNA-ASP
-7518 7585 gene
+ gene rrnL
 7518 7585 rRNA
  product l-rRNA
 8295 8364 gene
@@ -77,7 +77,7 @@
  gene trnL1(tag)
 12266 12336 tRNA
  product tRNA-LEU1
-12817 12770 gene
+ gene rrnS
 12817 12770 rRNA
  product s-rRNA
 14673 14155 gene
b
diff -r ca1142e5df8b -r e50a4f4542fc test-data/mitos2_NC_012920.seq
--- a/test-data/mitos2_NC_012920.seq Thu Jan 25 16:47:32 2024 +0000
+++ b/test-data/mitos2_NC_012920.seq Sat Mar 23 14:08:12 2024 +0000
b
@@ -1,72 +1,72 @@
 >Feature NC_012920
-576 646 gene
+577 647 gene
  gene trnF(gaa)
-576 646 tRNA
+577 647 tRNA
  product tRNA-PHE
-647 1600 gene
-647 1600 rRNA
+ gene rrnS
+648 1601 rRNA
  product s-rRNA
-3229 3303 gene
+3230 3304 gene
  gene trnL2(taa)
-3229 3303 tRNA
+3230 3304 tRNA
  product tRNA-LEU2
-4262 4330 gene
+4263 4331 gene
  gene trnI(gat)
-4262 4330 tRNA
+4263 4331 tRNA
  product tRNA-ILE
-4401 4468 gene
+4402 4469 gene
  gene trnM(cat)
-4401 4468 tRNA
+4402 4469 tRNA
  product tRNA-MET
-5654 5586 gene
+5655 5587 gene
  gene trnA(tgc)
-5654 5586 tRNA
+5655 5587 tRNA
  product tRNA-ALA
-5728 5656 gene
+5729 5657 gene
  gene trnN(gtt)
-5728 5656 tRNA
+5729 5657 tRNA
  product tRNA-ASN
-5890 5825 gene
+5891 5826 gene
  gene trnY(gta)
-5890 5825 tRNA
+5891 5826 tRNA
  product tRNA-TYR
-7513 7445 gene
+7514 7446 gene
  gene trnS2(tga)
-7513 7445 tRNA
+7514 7446 tRNA
  product tRNA-SER2
-7517 7584 gene
+7518 7585 gene
  gene trnD(gtc)
-7517 7584 tRNA
+7518 7585 tRNA
  product tRNA-ASP
-8294 8363 gene
+8295 8364 gene
  gene trnK(ttt)
-8294 8363 tRNA
+8295 8364 tRNA
  product tRNA-LYS
-10404 10468 gene
+10405 10469 gene
  gene trnR(tcg)
-10404 10468 tRNA
+10405 10469 tRNA
  product tRNA-ARG
-12137 12205 gene
+12138 12206 gene
  gene trnH(gtg)
-12137 12205 tRNA
+12138 12206 tRNA
  product tRNA-HIS
-12265 12335 gene
+12266 12336 gene
  gene trnL1(tag)
-12265 12335 tRNA
+12266 12336 tRNA
  product tRNA-LEU1
-14669 14148 gene
+14670 14149 gene
  gene nad6
-14669 14148 CDS
+14670 14149 CDS
  product NADH dehydrogenase subunit 6
-14741 14673 gene
+14742 14674 gene
  gene trnE(ttc)
-14741 14673 tRNA
+14742 14674 tRNA
  product tRNA-GLU
-15887 15952 gene
+15888 15953 gene
  gene trnT(tgt)
-15887 15952 tRNA
+15888 15953 tRNA
  product tRNA-THR
-16022 15955 gene
+16023 15956 gene
  gene trnP(tgg)
-16022 15955 tRNA
+16023 15956 tRNA
  product tRNA-PRO