| Previous changeset 40:cd852f3e04ab (2013-05-30) Next changeset 42:2abc37c27164 (2013-09-18) |
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Commit message:
Uploaded |
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modified:
SMART/Java/Python/cleaning/GffCleaner.py |
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| diff -r cd852f3e04ab -r e57682cd6997 SMART/Java/Python/cleaning/GffCleaner.py --- a/SMART/Java/Python/cleaning/GffCleaner.py Thu May 30 03:03:34 2013 -0400 +++ b/SMART/Java/Python/cleaning/GffCleaner.py Thu May 30 03:04:47 2013 -0400 |
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| @@ -127,6 +127,11 @@ if line[0] == ">": break parsedLine = ParsedLine(line, cpt) if self.acceptedTypes == None or parsedLine.type in self.acceptedTypes: + if parsedLine.id in self.lines: + cpt = 1 + while "%s-%d" % (parsedLine.id, cpt) in self.lines: + cpt += 1 + parsedLine.id = "%s-%d" % (parsedLine.id, cpt) self.lines[parsedLine.id] = parsedLine progress.inc() progress.done() |