| Previous changeset 43:6ad492ebdc38 (2019-02-22) Next changeset 45:cd90b21abc3c (2019-02-22) |
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Commit message:
Uploaded |
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added:
test-data/Differentially_Methylated_Positions.interval |
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| diff -r 6ad492ebdc38 -r e5a229b83461 test-data/Differentially_Methylated_Positions.interval --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Differentially_Methylated_Positions.interval Fri Feb 22 11:05:44 2019 -0500 |
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| b'@@ -0,0 +1,464887 @@\n+chr16\t53468112\t53468112\tcg00000029\t577\t+\tCDS\t0.146616219518542\t2.23570684334389\t0.273485175006601\t0.239609190206712\n+chr3\t37459206\t37459206\tcg00000108\t913\t+\tCDS\t0.913408320422272\t0.330853147064202\t0.623243998636913\t0.39258989981719\n+chr3\t171916037\t171916037\tcg00000109\t870\t+\tCDS\t0.806947181725601\t2.86612738127862\t0.232539543925332\t0.216244969633372\n+chr1\t91194675\t91194675\tcg00000165\t123\t-\tCDS\t0.811001765717347\t2.60270497768313\t0.248020671814953\t0.225232373436069\n+chr8\t42263295\t42263295\tcg00000236\t849\t-\tCDS\t0.866892503648627\t2.90879000227847\t0.230215862279736\t0.214851543324713\n+chr14\t69341139\t69341139\tcg00000289\t373\t+\tCDS\t0.556989408543452\t2.30426799342076\t0.268327315390556\t0.236767279985354\n+chr16\t28890100\t28890100\tcg00000292\t798\t+\tCDS\t0.622818939674419\t169.815500888348\t0.0058372332805385\t0.0220344081686113\n+chr8\t41167803\t41167803\tcg00000321\t453\t-\tCDS\t0.754347015404755\t0.812611784563142\t0.462489859333497\t0.330321758498426\n+chr1\t230560793\t230560793\tcg00000363\t390\t+\tCDS\t0.875886938606169\t24.4566365014425\t0.0385403800900198\t0.0665130564433205\n+chr15\t23034447\t23034447\tcg00000622\t30\t+\tCDS\t0.0172152912497438\t4.05653261085168\t0.18160031067637\t0.184482262176173\n+chr9\t139997925\t139997925\tcg00000658\t753\t-\tCDS\t0.785862313507243\t0.314318477567938\t0.631469535337436\t0.395501230069459\n+chr19\t54695678\t54695678\tcg00000714\t250\t+\tCDS\t0.0710608158341284\t0.0198952566230394\t0.900754608784965\t0.479055422423338\n+chr6\t25282780\t25282780\tcg00000721\t822\t-\tCDS\t0.923224070912103\t20.450118486728\t0.0455820567003055\t0.0741735576910669\n+chr3\t128902377\t128902377\tcg00000734\t72\t+\tCDS\t0.0539387109740093\t0.00309807496315895\t0.96067263451929\t0.494732871296244\n+chr12\t124086477\t124086477\tcg00000769\t44\t+\tCDS\t0.0433747469722818\t0.0203555618789371\t0.899624518031061\t0.478732527820523\n+chr4\t154609858\t154609858\tcg00000884\t757\t-\tCDS\t0.850180525394433\t0.0175147445534689\t0.906826256415091\t0.480736216615489\n+chr15\t59785307\t59785307\tcg00000905\t132\t-\tCDS\t0.0918032407134537\t0.183863780347087\t0.709841485040243\t0.422009978640979\n+chr11\t2720463\t2720463\tcg00000924\t385\t+\tCDS\t0.336995460500604\t0.00892008662376462\t0.933364876748632\t0.487711474670278\n+chr8\t49890609\t49890609\tcg00000948\t580\t+\tCDS\t0.892109114119658\t0.000925445400721792\t0.978493984862549\t0.499333411033054\n+chr1\t5937253\t5937253\tcg00000957\t865\t+\tCDS\t0.80102238265572\t15.3872337636538\t0.0592699234314915\t0.0881400020336562\n+chr8\t87081553\t87081553\tcg00001099\t445\t+\tCDS\t0.898909515938203\t2.29142836616786\t0.269277956580276\t0.237308413102509\n+chr3\t15106711\t15106711\tcg00001245\t16\t-\tCDS\t0.0360939720485201\t0.159008666673404\t0.728616646274826\t0.428116835020146\n+chr14\t60389786\t60389786\tcg00001249\t476\t+\tCDS\t0.881250795322887\t4.78618395735067\t0.160188380275175\t0.169981775579059\n+chr16\t3463964\t3463964\tcg00001261\t671\t+\tCDS\t0.197977835183864\t15.1167402292329\t0.0602365606021472\t0.089082666824091\n+chr20\t48959005\t48959005\tcg00001269\t61\t-\tCDS\t0.871576253520442\t52.2693145620755\t0.0185995917225724\t0.0419275290139671\n+chr1\t166958440\t166958440\tcg00001349\t842\t-\tCDS\t0.836625297530796\t473.157773434804\t0.00210678338535948\t0.0145319619679991\n+chr1\t214170377\t214170377\tcg00001364\t811\t-\tCDS\t0.850574013254354\t2.13221572533756\t0.281669878488749\t0.244056526948174\n+chr1\t43831042\t43831042\tcg00001446\t845\t-\tCDS\t0.867527546175485\t121.483027791223\t0.00813133824320487\t0.0261085946594264\n+chr19\t54746946\t54746946\tcg00001510\t414\t-\tCDS\t0.375558034672624\t0.0334541534554271\t0.871735099155926\t0.470986350866867\n+chr1\t51034866\t51034866\tcg00001534\t895\t-\tCDS\t0.347308772684299\t0.00690654753800394\t0.941336640837796\t0.489841381999451\n+chr10\t80828703\t80828703\tcg00001582\t61\t-\tCDS\t0.0458994891015416\t0.684160952660413\t0.495135464109364\t0.343901384447645\n+chr1\t200011787\t200011787\tcg00001583\t396\t-\tCDS\t0.707584053696534\t5361.47584724241\t0.000186463642048131\t0.00907721359047842\n+chr2\t11484705\t11484705\tcg00001594\t30\t+\tCDS\t0.0562717351226987\t0.0474423712330156\t0.847778025682726\t0.464401674520496\n+chr16\t89761661\t89761661\tcg00001687\t982\t+\tCDS\t0.975320266611556\t0.185368416916'..b'r5\t167126706\t167126706\tcg27664687\t71\t-\tCDS\t0.273148250172969\t257.954861245815\t0.00385424931403696\t0.018239553962232\n+chr2\t152830665\t152830665\tcg27664689\t321\t+\tCDS\t0.77058194108999\t10.1353003695849\t0.0861118483961435\t0.11277403024455\n+chr7\t128693986\t128693986\tcg27664783\t147\t+\tCDS\t0.24743816928857\t7.8604590255331\t0.107156404495293\t0.130394302764243\n+chr2\t119532487\t119532487\tcg27664844\t426\t-\tCDS\t0.0568797785296971\t2.64556666234577\t0.245359678581411\t0.223719352871042\n+chr5\t179234150\t179234150\tcg27664881\t36\t-\tCDS\t0.0472714473425885\t0.00420242045542344\t0.954209123170012\t0.49308602934066\n+chr5\t35622295\t35622295\tcg27664901\t197\t+\tCDS\t0.844014221637301\t1.54156847856613\t0.340243634758163\t0.274453236070168\n+chr7\t47698707\t47698707\tcg27665018\t554\t+\tCDS\t0.838269683563293\t84958.2893262818\t1.17702740080276e-05\t0.00776590710285016\n+chr12\t12618834\t12618834\tcg27665123\t907\t-\tCDS\t0.930646561120777\t0.215863509186128\t0.687882504306869\t0.414700927237671\n+chr19\t50102212\t50102212\tcg27665130\t827\t+\tCDS\t0.82135795771635\t0.702650727494836\t0.490112003559203\t0.341801340913372\n+chr15\t51369926\t51369926\tcg27665146\t188\t+\tCDS\t0.61986406352078\t14.17348694519\t0.0638692248157794\t0.0925982070023493\n+chr15\t38857079\t38857079\tcg27665171\t23\t+\tCDS\t0.0173273900790929\t0.167548926774916\t0.72197338605895\t0.426040593799695\n+chr16\t70720150\t70720150\tcg27665181\t241\t-\tCDS\t0.034772142477195\t7.28357048189065\t0.114242896143708\t0.136002471150743\n+chr6\t168168454\t168168454\tcg27665188\t474\t-\tCDS\t0.852622134987393\t208.193553551122\t0.0047688909946671\t0.0200424680189996\n+chr15\t80866134\t80866134\tcg27665327\t543\t+\tCDS\t0.887818945321934\t43.0484868137634\t0.0224503121460271\t0.0471063614018397\n+chr2\t120770691\t120770691\tcg27665377\t14\t-\tCDS\t0.00741458487768398\t159.582189465261\t0.00620807097517499\t0.0227031785365282\n+chr2\t3262407\t3262407\tcg27665397\t809\t-\tCDS\t0.821381689447233\t0.0917824282726769\t0.790530152484959\t0.447560073805347\n+chr2\t71204401\t71204401\tcg27665449\t226\t+\tCDS\t0.194133972909855\t73.5455680660337\t0.0133258327974226\t0.0343575064490366\n+chrX\t51075531\t51075531\tcg27665489\t447\t-\tCDS\t0.0160878029258305\t9.13338232443005\t0.0942626915466662\t0.119757964256038\n+chr16\t70624354\t70624354\tcg27665571\t511\t+\tCDS\t0.364048183366884\t48.8563527978675\t0.0198604454610085\t0.043643008809442\n+chr5\t1065466\t1065466\tcg27665580\t589\t-\tCDS\t0.771023994134789\t10.1175374785876\t0.0862440348986026\t0.112884464261826\n+chr22\t30112404\t30112404\tcg27665648\t585\t-\tCDS\t0.409444750444663\t592.885735640415\t0.00168241034106321\t0.0135448679503258\n+chr7\t100797596\t100797596\tcg27665659\t44\t-\tCDS\t0.0373783867090367\t0.417701974949797\t0.584346078991672\t0.378506691242143\n+chr16\t562977\t562977\tcg27665715\t957\t+\tCDS\t0.963220758905414\t0.464638898713433\t0.565808683755868\t0.371560825409313\n+chr6\t30740117\t30740117\tcg27665754\t787\t+\tCDS\t0.783739948830409\t3.67756184218508\t0.195179452569979\t0.193212324935199\n+chr5\t140764485\t140764485\tcg27665767\t385\t+\tCDS\t0.736685364447016\t32.3107855540492\t0.0295829291099367\t0.0560871447063137\n+chr4\t2757761\t2757761\tcg27665769\t487\t+\tCDS\t0.469963247433018\t4.17048957614606\t0.177882849041852\t0.182039911106554\n+chr2\t232055230\t232055230\tcg27665808\t531\t-\tCDS\t0.876721239797901\t228.795972558759\t0.00434225884607847\t0.019201058500285\n+chr16\t460516\t460516\tcg27665823\t708\t+\tCDS\t0.846338075034046\t5.26867479269594\t0.148620718970358\t0.161955931003592\n+chr4\t20698773\t20698773\tcg27665829\t714\t-\tCDS\t0.848160519748609\t1.15906282420775\t0.394276592448795\t0.300134258028209\n+chr11\t68970673\t68970673\tcg27665860\t786\t+\tCDS\t0.801351654856398\t0.00395453811778742\t0.955577402360681\t0.493447533161249\n+chr19\t12098906\t12098906\tcg27665925\t29\t+\tCDS\t0.023752645861026\t2.41728909066238\t0.260247596853584\t0.232230250278869\n+chr15\t66116728\t66116728\tcg27665985\t109\t-\tCDS\t0.282784948820483\t207.161872844573\t0.00479246995199277\t0.020080550136482\n+chr17\t80279077\t80279077\tcg27666046\t583\t+\tCDS\t0.120217747301837\t1.27624347999782\t0.375864790319015\t0.291535231589006\n+chr5\t126988030\t126988030\tcg27666123\t107\t-\tCDS\t0.838667732779253\t9.09609147454477\t0.0945960279891915\t0.120041937916321\n' 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