| Previous changeset 1:52a9ee230029 (2017-09-19) Next changeset 3:661290df739f (2018-08-06) |
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Commit message:
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 81a83f06b49db32928ba0cd44e5b6d0431868d27 |
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modified:
README.rst feature_sync.xml macros.xml tripal.py |
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| diff -r 52a9ee230029 -r e621d1187d73 README.rst --- a/README.rst Tue Sep 19 12:26:23 2017 -0400 +++ b/README.rst Thu Jun 21 08:47:13 2018 -0400 |
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| @@ -1,7 +1,7 @@ Galaxy-tripal ============= -Galaxy tools to interface with Tripal using pyhon-tripal +Galaxy tools to interface with Tripal using python-tripal Dependencies ------------ @@ -42,5 +42,4 @@ License ------- -All python scripts, wrappers, and the webapollo.py are licensed under -MIT license. +All python scripts and wrappers are licensed under MIT license. |
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| diff -r 52a9ee230029 -r e621d1187d73 feature_sync.xml --- a/feature_sync.xml Tue Sep 19 12:26:23 2017 -0400 +++ b/feature_sync.xml Thu Jun 21 08:47:13 2018 -0400 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="feature_sync" profile="16.04" name="Synchronize features" version="@WRAPPER_VERSION@.0"> +<tool id="feature_sync" profile="16.04" name="Synchronize features" version="@WRAPPER_VERSION@.1"> <description>from Chado to Tripal</description> <macros> <import>macros.xml</import> @@ -50,6 +50,7 @@ label="Feature to synchronize" help="Name of a feature to be synced (e.g. 'gene0001')" /> </repeat> + <expand macro="wait_for"/> </inputs> <outputs> <data format="txt" name="results" label="Synchronize features into Tripal" /> |
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| diff -r 52a9ee230029 -r e621d1187d73 macros.xml --- a/macros.xml Tue Sep 19 12:26:23 2017 -0400 +++ b/macros.xml Thu Jun 21 08:47:13 2018 -0400 |
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| @@ -50,6 +50,15 @@ TRIPAILLE_GLOBAL_CONFIG_PATH='.auth.yml' ]]></token> + <xml name="wait_for"> + <param name="wait_for" + type="data" + format="data" + optional="true" + label="Run this only after the following dataset is ready" + help="Use this if you want to delay the job execution until some data is already loaded. The selected dataset will not be used for anything else."/> + </xml> + <xml name="test_result"> <assert_stderr> <has_text text="MissingSchema" /> |
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| diff -r 52a9ee230029 -r e621d1187d73 tripal.py --- a/tripal.py Tue Sep 19 12:26:23 2017 -0400 +++ b/tripal.py Thu Jun 21 08:47:13 2018 -0400 |
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| @@ -1,7 +1,6 @@ import collections import os import time - from abc import abstractmethod import tripal |