| Previous changeset 8:2a8bb8223a45 (2017-11-15) Next changeset 10:46cccc52be5f (2018-01-14) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit 4fb528145289ad4db04e4589c02e9ddaa1194138 |
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modified:
featurecounts.xml |
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| diff -r 2a8bb8223a45 -r e6a2a912677a featurecounts.xml --- a/featurecounts.xml Wed Nov 15 15:53:25 2017 -0500 +++ b/featurecounts.xml Fri Nov 17 06:02:56 2017 -0500 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="featurecounts" name="featureCounts" version="1.6.0" profile="16.04"> +<tool id="featurecounts" name="featureCounts" version="1.6.0.1" profile="16.04"> <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description> <requirements> <requirement type="package" version="1.6.0">subread</requirement> @@ -384,7 +384,7 @@ label="${tool.name} on ${on_string}"> <filter>format == "tabdel_medium"</filter> <actions> - <action name="column_names" type="metadata" default="Geneid,${alignment.name},Length" /> + <action name="column_names" type="metadata" default="Geneid,${alignment.element_identifier},Length" /> </actions> </data> @@ -393,7 +393,7 @@ label="${tool.name} on ${on_string}"> <filter>format == "tabdel_short"</filter> <actions> - <action name="column_names" type="metadata" default="Geneid,${alignment.name}" /> + <action name="column_names" type="metadata" default="Geneid,${alignment.element_identifier}" /> </actions> </data> @@ -402,7 +402,7 @@ label="${tool.name} on ${on_string}: count table"> <filter>format == "tabdel_full"</filter> <actions> - <action name="column_names" type="metadata" default="Geneid,Chr,Start,End,Strand,Length,${alignment.name}" /> + <action name="column_names" type="metadata" default="Geneid,Chr,Start,End,Strand,Length,${alignment.element_identifier}" /> </actions> </data> @@ -411,7 +411,7 @@ hidden="true" label="${tool.name} on ${on_string}: summary"> <actions> - <action name="column_names" type="metadata" default="Status,${alignment.name}" /> + <action name="column_names" type="metadata" default="Status,${alignment.element_identifier}" /> </actions> </data> @@ -428,7 +428,7 @@ label="${tool.name} on ${on_string}: junction counts"> <filter>extended_parameters['exon_exon_junction_read_counting_enabled']['count_exon_exon_junction_reads']</filter> <actions> - <action name="column_names" type="metadata" default="PrimaryGene,SecondaryGene,Site1_chr,Site1_location,Site1_strand,Site2_chr,Site2_location,Site2_strand,${alignment.name}" /> + <action name="column_names" type="metadata" default="PrimaryGene,SecondaryGene,Site1_chr,Site1_location,Site1_strand,Site2_chr,Site2_location,Site2_strand,${alignment.element_identifier}" /> </actions> </data> </outputs> |