| Previous changeset 7:52eae2bb8a4d (2015-01-21) Next changeset 9:031f77d360ea (2015-01-21) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml |
| b |
| diff -r 52eae2bb8a4d -r e6fbfcc95901 tool_dependencies.xml --- a/tool_dependencies.xml Wed Jan 21 15:08:12 2015 -0500 +++ b/tool_dependencies.xml Wed Jan 21 17:25:59 2015 -0500 |
| b |
| @@ -2,7 +2,7 @@ <tool_dependency> <package name="cmake" version="3.1.0"> - <repository changeset_revision="a18ccb33a785" name="package_cmake_3_1_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="782e014e71f9" name="package_cmake_3_1_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="samtools" version="0.1.18"> @@ -14,7 +14,7 @@ <actions> <action type="set_environment_for_install"> - <repository changeset_revision="a18ccb33a785" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="782e014e71f9" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="cmake" version="3.1.0" /> </repository> </action> @@ -26,11 +26,17 @@ </action> <action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action> + <action type="shell_command">pwd > ~/whereami</action> <action type="shell_command">mkdir build</action> + <action type="shell_command">pwd > ~/whereami2</action> <action type="change_directory">build</action> + <action type="shell_command">pwd > ~/whereami3</action> <action type="shell_command">cmake ..</action> + <action type="shell_command">pwd > ~/whereami4</action> <action type="shell_command">make</action> + <action type="shell_command">pwd > ~/whereami5</action> <action type="change_directory">..</action> + <action type="shell_command">pwd > ~/whereami6</action> <action type="move_directory_files"> <source_directory>./</source_directory> |