| Previous changeset 1:1e2fc34b1f20 (2018-01-25) Next changeset 3:ff1148892ce3 (2018-01-26) |
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Commit message:
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/flashlfq commit 38eecdb36b6b505afcdd99de7351eed9c3729843 |
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modified:
flashlfq.xml |
| b |
| diff -r 1e2fc34b1f20 -r e70198847b2a flashlfq.xml --- a/flashlfq.xml Thu Jan 25 18:02:19 2018 -0500 +++ b/flashlfq.xml Thu Jan 25 20:37:09 2018 -0500 |
| [ |
| @@ -31,7 +31,8 @@ && cp *_FlashLFQ_QuantifiedBaseSequences.tsv '$quantifiedBaseSequences' && cp *_FlashLFQ_QuantifiedModifiedSequences.tsv '$quantifiedModifiedSequences' && cp *_FlashLFQ_QuantifiedPeaks.tsv '$quantifiedPeaks' - && cp *_FlashLFQ_QuantifiedProteins.tsv '$quantifiedProteins' + ## create issue for FlashLFQ to name column headers correctly + && grep -v '^test$' *_FlashLFQ_QuantifiedProteins.tsv > '$quantifiedProteins' ]]></command> <inputs> <param name="idt" type="data" format="tabular" label="identification file" @@ -76,7 +77,7 @@ <data name="quantifiedProteins" format="tabular" label="${tool.name} on ${on_string}: QuantifiedProteins.tsv"> <actions> <action name="column_names" type="metadata" - default="Protein"/> + default="Protein,${','.join([i.name for i in $peak_lists])}"/> </actions> </data> </outputs> |