| Previous changeset 6:266800d51605 (2021-06-10) |
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Commit message:
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c |
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modified:
GeneSeqToFamily.ga |
| b |
| diff -r 266800d51605 -r e732a731f778 GeneSeqToFamily.ga --- a/GeneSeqToFamily.ga Thu Jun 10 16:18:59 2021 +0000 +++ b/GeneSeqToFamily.ga Thu Sep 01 11:32:32 2022 +0000 |
| [ |
| b'@@ -1,954 +1,1126 @@\n {\n- "a_galaxy_workflow": "true", \n- "annotation": "", \n- "format-version": "0.1", \n- "name": "GeneSeqToFamily", \n+ "a_galaxy_workflow": "true",\n+ "annotation": "",\n+ "format-version": "0.1",\n+ "name": "GeneSeqToFamily",\n "steps": {\n "0": {\n- "annotation": "", \n- "content_id": null, \n- "errors": null, \n- "id": 0, \n- "input_connections": {}, \n+ "annotation": "",\n+ "content_id": null,\n+ "errors": null,\n+ "id": 0,\n+ "input_connections": {},\n "inputs": [\n {\n- "description": "", \n+ "description": "",\n "name": "CDS"\n }\n- ], \n- "label": "CDS", \n- "name": "Input dataset", \n- "outputs": [], \n+ ],\n+ "label": "CDS",\n+ "name": "Input dataset",\n+ "outputs": [],\n "position": {\n- "left": 225.984375, \n- "top": 532.5\n- }, \n- "tool_id": null, \n- "tool_state": "{\\"name\\": \\"CDS\\"}", \n- "tool_version": null, \n- "type": "data_input", \n- "uuid": "d2777a78-6429-47f6-9567-cb15140ace8d", \n- "workflow_outputs": [\n- {\n- "label": null, \n- "output_name": "output", \n- "uuid": "7eedd485-b41e-4b55-9359-9f7e56d84f54"\n- }\n- ]\n- }, \n+ "bottom": 4.8000030517578125,\n+ "height": 61.80000305175781,\n+ "left": 178.98333740234375,\n+ "right": 378.98333740234375,\n+ "top": -57,\n+ "width": 200,\n+ "x": 178.98333740234375,\n+ "y": -57\n+ },\n+ "tool_id": null,\n+ "tool_state": "{\\"optional\\": false}",\n+ "tool_version": null,\n+ "type": "data_input",\n+ "uuid": "d2777a78-6429-47f6-9567-cb15140ace8d",\n+ "workflow_outputs": []\n+ },\n "1": {\n- "annotation": "", \n- "content_id": null, \n- "errors": null, \n- "id": 1, \n- "input_connections": {}, \n+ "annotation": "",\n+ "content_id": null,\n+ "errors": null,\n+ "id": 1,\n+ "input_connections": {},\n "inputs": [\n {\n- "description": "", \n+ "description": "",\n "name": "Species tree"\n }\n- ], \n- "label": "Species tree", \n- "name": "Input dataset", \n- "outputs": [], \n+ ],\n+ "label": "Species tree",\n+ "name": "Input dataset",\n+ "outputs": [],\n "position": {\n- "left": 244.875, \n- "top": 947.578125\n- }, \n- "tool_id": null, \n- "tool_state": "{\\"name\\": \\"Species tree\\"}", \n- "tool_version": null, \n- "type": "data_input", \n- "uuid": "1f2ca308-faad-44fa-ba48-fff5aeecbbd3", \n- "workflow_outputs": [\n- {\n- "label": null, \n- "output_name": "output", \n- "uuid": "50734600-41fa-437a-9b2b-6572fd8763a2"\n- }\n- ]\n- }, \n+ "bottom": 419.88331604003906,\n+ "height": 61.80000305175781,\n+ "left": 197.88333129882812,\n+ "right": 397.8833312988281,\n+ "top": 358.08331298828125,\n+ "width": 200,\n+ "x": 197.88333129882812,\n+ "y": 358.08331298828125\n+ },\n+ "tool_id": null,\n+ "tool_state": "{\\"optional\\": false}",\n+ "tool_versio'..b'+ "owner": "earlhaminst",\n "tool_shed": "toolshed.g2.bx.psu.edu"\n- }, \n- "tool_state": "{\\"__page__\\": null, \\"__rerun_remap_job_id__\\": null, \\"genetreeFile\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"ConnectedValue\\\\\\"}\\", \\"format_type\\": \\"{\\\\\\"__current_case__\\\\\\": 0, \\\\\\"homologies\\\\\\": [\\\\\\"one-to-one\\\\\\", \\\\\\"one-to-many\\\\\\", \\\\\\"many-to-one\\\\\\", \\\\\\"many-to-many\\\\\\", \\\\\\"paralogs\\\\\\"], \\\\\\"out_format\\\\\\": \\\\\\"tabular\\\\\\"}\\"}", \n- "tool_version": "3.1.1", \n- "type": "tool", \n- "uuid": "427c5e21-0ed7-41b9-8e2b-447ea99e5c29", \n+ },\n+ "tool_state": "{\\"format_type\\": {\\"out_format\\": \\"tabular\\", \\"__current_case__\\": 0, \\"homologies\\": [\\"one-to-one\\", \\"one-to-many\\", \\"many-to-one\\", \\"many-to-many\\", \\"paralogs\\"]}, \\"genetreeFile\\": {\\"__class__\\": \\"ConnectedValue\\"}, \\"__page__\\": null, \\"__rerun_remap_job_id__\\": null}",\n+ "tool_version": "3.1.1",\n+ "type": "tool",\n+ "uuid": "427c5e21-0ed7-41b9-8e2b-447ea99e5c29",\n "workflow_outputs": [\n {\n- "label": null, \n- "output_name": "homology", \n- "uuid": "d20dba82-b0c5-41d7-9f2e-f67240548967"\n+ "label": null,\n+ "output_name": "homology",\n+ "uuid": "470f9126-778c-40bd-93ea-2d0ebfd985d2"\n+ }\n+ ]\n+ },\n+ "21": {\n+ "annotation": "",\n+ "content_id": "toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete_gene_csv_finder/3.1.2",\n+ "errors": null,\n+ "id": 21,\n+ "input_connections": {\n+ "genetreeFile": {\n+ "id": 19,\n+ "output_name": "output"\n+ }\n+ },\n+ "inputs": [\n+ {\n+ "description": "runtime parameter for tool Gene Copy Number Finder",\n+ "name": "genetreeFile"\n+ },\n+ {\n+ "description": "runtime parameter for tool Gene Copy Number Finder",\n+ "name": "speciesorder"\n+ }\n+ ],\n+ "label": null,\n+ "name": "Gene Copy Number Finder",\n+ "outputs": [\n+ {\n+ "name": "genes",\n+ "type": "tabular"\n+ }\n+ ],\n+ "position": {\n+ "bottom": 918.3999938964844,\n+ "height": 154.39999389648438,\n+ "left": 2312,\n+ "right": 2512,\n+ "top": 764,\n+ "width": 200,\n+ "x": 2312,\n+ "y": 764\n+ },\n+ "post_job_actions": {},\n+ "tool_id": "toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/ete_gene_csv_finder/3.1.2",\n+ "tool_shed_repository": {\n+ "changeset_revision": "dc32007a6b36",\n+ "name": "ete",\n+ "owner": "earlhaminst",\n+ "tool_shed": "toolshed.g2.bx.psu.edu"\n+ },\n+ "tool_state": "{\\"genetreeFile\\": {\\"__class__\\": \\"RuntimeValue\\"}, \\"speciesorder\\": {\\"__class__\\": \\"RuntimeValue\\"}, \\"__page__\\": null, \\"__rerun_remap_job_id__\\": null}",\n+ "tool_version": "3.1.2",\n+ "type": "tool",\n+ "uuid": "437d0eeb-8391-49db-99d8-d4e41ee5d9ee",\n+ "workflow_outputs": [\n+ {\n+ "label": "Gene Copy Number Finder on input dataset(s)",\n+ "output_name": "genes",\n+ "uuid": "96311b11-c446-49c4-8220-b0dacabd2b00"\n }\n ]\n }\n- }, \n- "tags": [], \n- "uuid": "45eedb69-98b5-4ea2-9f17-791fa54ef823", \n- "version": 20\n-}\n\\ No newline at end of file\n+ },\n+ "tags": [],\n+ "uuid": "c3ff9db2-1e29-4b92-8633-b06eb0973eb4",\n+ "version": 1\n+}\n' |