| Previous changeset 0:7621d36a4e9c (2018-04-30) Next changeset 2:ba62b6bab010 (2018-04-30) |
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Commit message:
planemo upload for repository https://toolshed.g2.bx.psu.edu/view/yqiancolumbia/ctk/7621d36a4e9c commit 81ece2551cea27cbd0e718ef5b7a2fe8d4abd071-dirty |
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added:
tool_sheds_conf.xml |
| b |
| diff -r 7621d36a4e9c -r e7d962da0397 tool_sheds_conf.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_sheds_conf.xml Mon Apr 30 05:00:08 2018 -0400 |
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| @@ -0,0 +1,50 @@ +<?xml version='1.0' encoding='utf-8'?> +<toolbox> + <section id="ctk" name="CTK"> + <tool file="ctk/fastqFilter.xml" /> + <tool file="ctk/trimming3.xml" /> + <tool file="../shed_tools/toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/01d94df2e32a/cutadapt/cutadapt.xml" guid="toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.6"> + <tool_shed>toolshed.g2.bx.psu.edu</tool_shed> + <repository_name>cutadapt</repository_name> + <repository_owner>lparsons</repository_owner> + <installed_changeset_revision>01d94df2e32a</installed_changeset_revision> + <id>toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.6</id> + <version>1.6</version> + </tool> + <tool file="ctk/fastq2collapse.xml" /> + <tool file="ctk/stripBarcode.xml" /> + <tool file="../shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/bwa/4d82cf59895e/bwa/bwa.xml" guid="toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.16.2"> + <tool_shed>toolshed.g2.bx.psu.edu</tool_shed> + <repository_name>bwa</repository_name> + <repository_owner>devteam</repository_owner> + <installed_changeset_revision>4d82cf59895e</installed_changeset_revision> + <id>toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.16.2</id> + <version>0.7.16.2</version> + </tool> + <tool file="../shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/af7c50162f0b/bam_to_sam/bam_to_sam.xml" guid="toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0"> + <tool_shed>toolshed.g2.bx.psu.edu</tool_shed> + <repository_name>bam_to_sam</repository_name> + <repository_owner>devteam</repository_owner> + <installed_changeset_revision>af7c50162f0b</installed_changeset_revision> + <id>toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0</id> + <version>2.0</version> + </tool> + <tool file="ctk/parseAlignment.xml" /> + <tool file="ctk/removeRNA.xml" /> + <tool file="ctk/tag2collapse.xml" /> + <!-- <tool file="ctk/selectRow.xml" /> --> + <tool file="filters/compare.xml" /> + <tool file="ctk/getMutationType.xml" /> + <tool file="ctk/T2C.xml" /> + <tool file="ctk/bed2rgb.xml" /> + <tool file="filters/catWrapper.xml" /> + <!-- <tool file="ctk/reverseComplement.xml" /> --> + <tool file="ctk/bed2annotation.xml" /> + <tool file="ctk/tag2peak.xml" /> + <tool file="filters/cutWrapper.xml" /> + <tool file="ctk/tag2profile.xml" /> + <tool file="ctk/getMutationType.xml" /> + <tool file="ctk/CIMS.xml" /> + <tool file="ctk/CITS.xml" /> +</section> +</toolbox> |