Repository 'apollo_create_account'
hg clone https://toolshed.g2.bx.psu.edu/repos/gga/apollo_create_account

Changeset 8:e80d29fd2a33 (2019-04-10)
Previous changeset 7:0d9cb9e56ca0 (2019-03-15) Next changeset 9:0c3a940da13d (2019-07-29)
Commit message:
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 2488ac4ea447c45886ce5c7b102fb28c5839d26b
modified:
create_or_update_organism.py
b
diff -r 0d9cb9e56ca0 -r e80d29fd2a33 create_or_update_organism.py
--- a/create_or_update_organism.py Fri Mar 15 06:05:10 2019 -0400
+++ b/create_or_update_organism.py Wed Apr 10 14:06:00 2019 -0400
b
@@ -47,7 +47,7 @@
     if(os.path.exists(args.jbrowse)):
         shutil.rmtree(args.jbrowse)
     # Copy files
-    shutil.copytree(args.jbrowse_src, args.jbrowse)
+    shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True)
 
     path_fasta = args.jbrowse + '/seq/genome.fasta'
     path_2bit = args.jbrowse + '/seq/genome.2bit'