| Next changeset 1:09faf0ae581b (2014-05-22) |
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Commit message:
Uploaded |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r e9407b729a69 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu May 22 05:58:18 2014 -0400 |
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| @@ -0,0 +1,52 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="openssl" version="1.0.1g"> + <repository changeset_revision="e459a9ce3fce" name="package_openssl" owner="jankanis" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + + <package name="python3" version="3.4.1"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://www.python.org/ftp/python/3.4.1/Python-3.4.1.tgz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="e459a9ce3fce" name="package_openssl" owner="jankanis" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="openssl" version="1.0.1g" /> + </repository> + </action> + <action type="autoconf">--prefix=$INSTALL_DIR</action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <!-- empty PYTHONPATH, otherwise we will get Galaxy's Python 2 libraries in the Python 3 path--> + <environment_variable action="set_to" name="PYTHONPATH" /> + <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + + <readme> + Python 3.4.1. Configured with the default settings, using --prefix=$INSTALL_DIR. + + Python as of version 3.3 includes a built-in virtual environment manager. To create a python 3 virtual env, include the following actions in your tool_dependencies.xml: + + <action type="set_environment_for_install"> + <repository name="python3" owner="jankanis"> + <package name="python3" version="3.4.1" /> + </repository> + </action> + <action type="shell_command"> + # Unset any saved environment settings from parent virtual + # environments, e.g. for python 2 or if Galaxy itself is running + # from within a virtual environment. + unset _OLD_VIRTUAL_PATH; unset _OLD_VIRTUAL_PYTHONHOME + pyvenv {{$MY_PACKAGE_NAME}} + . {{$MY_PACKAGE_NAME}}/bin/activate + pip install {{$PYTHON-PACKAGE}} + </action> + <action type="set_environment"> + <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python3.4/site-packages:$INSTALL_DIR/lib64/python3.4/iste-packages</environment_variable> + </action> + + </readme> + + </package> +</tool_dependency> |