| Previous changeset 3:f47ed6c69f5d (2024-02-01) Next changeset 5:37e37518cad1 (2024-06-03) |
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Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 389df0134cd0763dcf02aac6e623fc15f8861c1e |
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modified:
qiime2_core__tools__export.xml |
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removed:
test-data/YY/YY_S49_R1_001.fastq.gz test-data/YY/YY_S49_R2_001.fastq.gz |
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| diff -r f47ed6c69f5d -r e96704fc516d qiime2_core__tools__export.xml --- a/qiime2_core__tools__export.xml Thu Feb 01 21:22:13 2024 +0000 +++ b/qiime2_core__tools__export.xml Thu Apr 25 21:28:08 2024 +0000 |
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| b'@@ -1,21 +1,21 @@\n <?xml version=\'1.0\' encoding=\'utf-8\'?>\n <!--\n-Copyright (c) 2023, QIIME 2 development team.\n+Copyright (c) 2024, QIIME 2 development team.\n \n Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)\n -->\n <!--\n This tool was automatically generated by:\n- q2galaxy (version: 2023.5.0)\n+ q2galaxy (version: 2024.2.1)\n for:\n- qiime2 (version: 2023.5.1)\n+ qiime2 (version: 2024.2.0)\n -->\n-<tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2023.5.0+dist.h193f7cc9.2" profile="22.05" license="BSD-3-Clause">\n+<tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2024.2.1+dist.he188c3c2" profile="22.05" license="BSD-3-Clause">\n <description>Export data from a QIIME 2 artifact</description>\n <requirements>\n- <container type="docker">quay.io/qiime2/core:2023.5</container>\n+ <container type="docker">quay.io/qiime2/amplicon:2024.2</container>\n </requirements>\n- <command detect_errors="exit_code">q2galaxy run tools export \'$inputs\'</command>\n+ <command>q2galaxy run tools export \'$inputs\'</command>\n <configfiles>\n <inputs name="inputs" data_style="paths"/>\n </configfiles>\n@@ -34,6 +34,7 @@\n <conditional name="fmt_finder">\n <param name="type" type="select" label="To change the format, select the type indicated above:">\n <option value="None" selected="true">export as is (no conversion)</option>\n+ <option value="BLASTDB">BLASTDB</option>\n <option value="Bowtie2Index">Bowtie2Index</option>\n <option value="DeblurStats">DeblurStats</option>\n <option value="DistanceMatrix">DistanceMatrix</option>\n@@ -52,8 +53,11 @@\n <option value="FeatureData__ob__PairedEndSequence__cb__">FeatureData[PairedEndSequence]</option>\n <option value="FeatureData__ob__ProteinSequence__cb__">FeatureData[ProteinSequence]</option>\n <option value="FeatureData__ob__RNASequence__cb__">FeatureData[RNASequence]</option>\n+ <option value="FeatureData__ob__SILVATaxidMap__cb__">FeatureData[SILVATaxidMap]</option>\n+ <option value="FeatureData__ob__SILVATaxonomy__cb__">FeatureData[SILVATaxonomy]</option>\n <option value="FeatureData__ob__Sequence__cb__">FeatureData[Sequence]</option>\n <option value="FeatureData__ob__Taxonomy__cb__">FeatureData[Taxonomy]</option>\n+ <option value="FeatureMap__ob__MAGtoContigs__cb__">FeatureMap[MAGtoContigs]</option>\n <option value="FeatureTable__ob__Balance__cb__">FeatureTable[Balance]</option>\n <option value="FeatureTable__ob__Composition__cb__">FeatureTable[Composition]</option>\n <option value="FeatureTable__ob__Design__cb__">FeatureTable[Design]</option>\n@@ -61,6 +65,10 @@\n <option value="FeatureTable__ob__PercentileNormalized__cb__">FeatureTable[PercentileNormalized]</option>\n <option value="FeatureTable__ob__PresenceAbsence__cb__">FeatureTable[PresenceAbsence]</option>\n <option value="FeatureTable__ob__RelativeFrequency__cb__">FeatureTable[RelativeFrequency]</option>\n+ <option value="GenomeData__ob__BLAST6__cb__">GenomeData[BLAST6]</option>\n+ <option value="GenomeData__ob__Genes__cb__">GenomeData[Genes]</option>\n+ <option value="GenomeData__ob__Loci__cb__">GenomeData[Loci]</option>\n+ <option value="GenomeData__ob__Proteins__cb__">GenomeData[Proteins]</option>\n <option value="Hierarchy">Hierarchy</option>\n <option value="ImmutableMetadata">ImmutableMetadata</option>\n <option value="MultiplexedPairedEndBarcodeInSequence">MultiplexedPairedEndBarcodeInSequence</option>\n@@ -72,18 +80,25 @@\n <option value="ProcrustesStatistics">ProcrustesStatistics</option>\n <option v'..b'atsDirFmt\n+ - BAMDirFmt\n+ - TaxonomicClassiferTemporaryPickleDirFmt\n+ - ProbabilitiesDirectoryFormat\n+ - BooleanSeriesFormat\n+ - ErrorCorrectionDetailsDirFmt\n+ - AlignedRNASequencesDirectoryFormat\n+ - ProcrustesStatisticsDirFmt\n+ - DifferentialDirectoryFormat\n+ - SampleEstimatorDirFmt\n+ - PlacementsDirFmt\n+ - SILVATaxidMapDirectoryFormat\n+ - BIOMV210DirFmt\n+ - MultiBAMDirFmt\n+ - QualityFilterStatsDirFmt\n - TrueTargetsDirectoryFormat\n- - UchimeStatsFmt\n- - BLAST6Format\n+ - MAGtoContigsFormat\n+ - ArtificialGroupingDirectoryFormat\n+ - BooleanSeriesDirectoryFormat\n+ - PlacementsFormat\n+ - PredictionsFormat\n+ - MultiplexedPairedEndBarcodeInSequenceDirFmt\n+ - DeblurStatsDirFmt\n+ - SingleLanePerSampleSingleEndFastqDirFmt\n+ - AlignedProteinFASTAFormat\n - PairedDNASequencesDirectoryFormat\n- - QIIME1DemuxDirFmt\n+ - UchimeStatsDirFmt\n+ - DataLoafPackageDirFmt\n+ - ArtificialGroupingFormat\n+ - PredictionsDirectoryFormat\n+ - SILVATaxonomyDirectoryFormat\n+ - DNAFASTAFormat\n+ - EMPSingleEndDirFmt\n+ - SingleLanePerSamplePairedEndFastqDirFmt\n+ - AlignedProteinSequencesDirectoryFormat\n+ - PairedRNASequencesDirectoryFormat\n+ - SeppReferenceDirFmt\n+ - MAGtoContigsDirFmt\n+ - DifferentialFormat\n+ - UchimeStatsFmt\n+ - SILVATaxonomyFormat\n+ - FirstDifferencesDirectoryFormat\n+ - DNASequencesDirectoryFormat\n+ - GenesDirectoryFormat\n+ - EMPPairedEndDirFmt\n+ - AlignedDNAFASTAFormat\n+ - SILVATaxidMapFormat\n+ - ProteinsDirectoryFormat\n+ - MultiMAGSequencesDirFmt\n - QualityFilterStatsFmt\n+ - AlignedDNASequencesDirectoryFormat\n+ - LSMatFormat\n+ - ImmutableMetadataFormat\n+ - DeblurStatsFmt\n+ - AlphaDiversityFormat\n+ - MultiBowtie2IndexDirFmt\n+ - ImportanceFormat\n+ - FirstDifferencesFormat\n - DADA2StatsFormat\n- - AlignedProteinFASTAFormat\n- - PlacementsFormat\n- - NewickFormat\n- - ProbabilitiesDirectoryFormat\n- - ErrorCorrectionDetailsDirFmt\n+ - DistanceMatrixDirectoryFormat\n+ - ImmutableMetadataDirectoryFormat\n+ - OrdinationFormat\n+ - DecontamScoreDirFmt\n+ - CasavaOneEightSingleLanePerSampleDirFmt\n+ - MultiplexedSingleEndBarcodeInSequenceDirFmt\n+ - AlphaDiversityDirectoryFormat\n - ProteinFASTAFormat\n - RNAFASTAFormat\n- - MultiplexedSingleEndBarcodeInSequenceDirFmt\n- - BooleanSeriesFormat\n- - LSMatFormat\n+ - ContigSequencesDirFmt\n - ImportanceDirectoryFormat\n- - DeblurStatsFmt\n- - AlignedRNASequencesDirectoryFormat\n- - QualityFilterStatsDirFmt\n- - TaxonomicClassiferTemporaryPickleDirFmt\n- - BooleanSeriesDirectoryFormat\n- - DifferentialDirectoryFormat\n- - DNAFASTAFormat\n- - ProcrustesStatisticsFmt\n- - PlacementsDirFmt\n- - EMPSingleEndDirFmt\n- - DecontamScoreFormat\n- - BIOMV210DirFmt\n- - ImmutableMetadataDirectoryFormat\n- - AlignedDNASequencesDirectoryFormat\n+ - DADA2StatsDirFmt\n+ - NewickFormat\n+ - OrdinationDirectoryFormat\n - TSVTaxonomyDirectoryFormat\n- - OrdinationFormat\n- - FirstDifferencesDirectoryFormat\n- - Bowtie2IndexDirFmt\n- - BIOMV210Format\n- - SingleLanePerSampleSingleEndFastqDirFmt\n- - SampleEstimatorDirFmt\n- - PairedRNASequencesDirectoryFormat\n- - CasavaOneEightSingleLanePerSampleDirFmt\n- - AlignedProteinSequencesDirectoryFormat\n- - UchimeStatsDirFmt\n- - NewickDirectoryFormat\n- - SingleLanePerSamplePairedEndFastqDirFmt\n- - DifferentialFormat\n+ - BLAST6Format\n+ - LociDirectoryFormat\n - ProteinSequencesDirectoryFormat\n - RNASequencesDirectoryFormat\n- - MultiplexedPairedEndBarcodeInSequenceDirFmt\n- - AlphaDiversityFormat\n- - DistanceMatrixDirectoryFormat\n- - ArtificialGroupingFormat\n- - ArtificialGroupingDirectoryFormat\n+ - BIOMV210Format\n - ProbabilitiesFormat\n- - DeblurStatsDirFmt\n- - SeppReferenceDirFmt\n- - ImportanceFormat\n+ - BLASTDBDirFmtV5\n+ - DecontamScoreFormat\n+ - AlignedRNAFASTAFormat\n+ - NewickDirectoryFormat\n+ - ProcrustesStatisticsFmt\n - BLAST6DirectoryFormat\n- - AlignedRNAFASTAFormat\n- - DNASequencesDirectoryFormat\n- - ProcrustesStatisticsDirFmt\n- - PredictionsFormat\n+ - SeedOrthologDirFmt\n+ - QIIME1DemuxDirFmt\n+ - Bowtie2IndexDirFmt\n </help>\n <citations>\n <citation type="doi">10.1038/s41587-019-0209-9</citation>\n' |
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