| Previous changeset 0:bda6012394f7 (2018-09-27) Next changeset 2:1d2a91ab28b7 (2024-03-11) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plasflow commit 174dafdf949ebf6e6d6f7a314db870daca8a46d6 |
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modified:
plasflow.xml test-data/output test-data/output_plasmids.fasta test-data/test.fasta |
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added:
test-data/test.fasta.gz |
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| diff -r bda6012394f7 -r ea270d0ad0e6 plasflow.xml --- a/plasflow.xml Thu Sep 27 06:41:19 2018 -0400 +++ b/plasflow.xml Sat Jan 21 13:49:39 2023 +0000 |
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| @@ -1,17 +1,29 @@ -<tool id="PlasFlow" name="PlasFlow" version="1.0"> +<tool id="PlasFlow" name="PlasFlow" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.01"> <description>Prediction of plasmid sequences in metagenomic contigs</description> + <macros> + <token name="@TOOL_VERSION@">1.1.0</token> + <token name="@VERSION_SUFFIX@">0</token> + </macros> <requirements> - <requirement type="package" version="1.1.0">plasflow</requirement> + <requirement type="package" version="@TOOL_VERSION@">plasflow</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ +## PlasFlow supports gz only partially +## https://github.com/smaegol/PlasFlow/blob/45604ff637c65f709dabff63e665fa60896be241/PlasFlow.py#L444 +#if $readFile.ext == "fasta.gz" + gunzip -c '$readFile' > 'reads.fasta' && +#else + ln -s '$readFile' 'reads.fasta' && +#end if + PlasFlow.py ---input '$readFile' +--input 'reads.fasta' --output 'output' --threshold '$threshold' ]]></command> <inputs> - <param name="readFile" type="data" format="fastq,fasta" optional="true" label="Sequence Reads" /> - <param argument="threshold" type="float" value="0.7" label="Threshold for porbability filtering"/> + <param name="readFile" type="data" format="fasta,fasta.gz" optional="true" label="Contig Sequences" /> + <param argument="threshold" type="float" value="0.7" min="0" max="1" label="Threshold for probability filtering"/> </inputs> <outputs> <data name="probability_table" from_work_dir="output" format="tabular" label="${tool.name} on ${on_string}: Probability table" /> @@ -21,16 +33,29 @@ </outputs> <tests> <test> - <param name="readFile" value="test.fasta"/> + <param name="readFile" value="test.fasta" ftype="fasta"/> <param name="threshold" value="0.7"/> - <output name="probability_table" value="output"/> + <output name="probability_table" value="output" compare="re_match"/> + <output name="chromosomes" value="output_chromosomes.fasta"/> + <output name="plasmids" value="output_plasmids.fasta"/> + <output name="unclassified" value="output_unclassified.fasta"/> + </test> + <test> + <param name="readFile" value="test.fasta.gz" ftype="fasta.gz"/> + <param name="threshold" value="0.7"/> + <output name="probability_table" value="output" compare="re_match"/> <output name="chromosomes" value="output_chromosomes.fasta"/> <output name="plasmids" value="output_plasmids.fasta"/> <output name="unclassified" value="output_unclassified.fasta"/> </test> </tests> <help><![CDATA[ -PlasFlow is a set of scripts used for prediction of plasmid sequences in metagenomic contigs. It relies on the neural network models trained on full genome and plasmid sequences and is able to differentiate between plasmids and chromosomes with accuracy reaching 96%. It outperforms other available solutions for plasmids recovery from metagenomes and incorporates the thresholding which allows for exclusion of incertain predictions. PlasFlow has been published in Nucleic Acids Research +PlasFlow is a set of scripts used for prediction of plasmid sequences in +metagenomic contigs. It relies on the neural network models trained on full +genome and plasmid sequences and is able to differentiate between plasmids and +chromosomes with accuracy reaching 96%. It outperforms other available solutions +for plasmids recovery from metagenomes and incorporates the thresholding which +allows for exclusion of incertain predictions. ]]></help> <citations> <citation type="doi">10.1093/nar/gkx1321</citation> |
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| diff -r bda6012394f7 -r ea270d0ad0e6 test-data/output --- a/test-data/output Thu Sep 27 06:41:19 2018 -0400 +++ b/test-data/output Sat Jan 21 13:49:39 2023 +0000 |
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| @@ -1,3 +1,3 @@ - contig_id contig_name contig_length id label chromosome.Acidobacteria chromosome.Actinobacteria chromosome.Bacteroidetes chromosome.Chlamydiae chromosome.Chlorobi chromosome.Chloroflexi chromosome.Cyanobacteria chromosome.DeinococcusThermus chromosome.Firmicutes chromosome.Fusobacteria chromosome.Nitrospirae chromosome.other chromosome.Planctomycetes chromosome.Proteobacteria chromosome.Spirochaetes chromosome.Tenericutes chromosome.Thermotogae chromosome.Verrucomicrobia plasmid.Actinobacteria plasmid.Bacteroidetes plasmid.Chlamydiae plasmid.Cyanobacteria plasmid.DeinococcusThermus plasmid.Firmicutes plasmid.Fusobacteria plasmid.other plasmid.Proteobacteria plasmid.Spirochaetes -0 0 utg000144c 128167 26 plasmid.Proteobacteria 4.2340263e-05 2.5652807e-06 1.6543838e-08 2.763775e-07 7.6599295e-05 2.1182545e-05 1.3717261e-11 5.7835554e-09 3.862481e-07 4.151875e-09 2.8553375e-05 3.3703511e-06 6.2954365e-07 0.0045834533 5.0251043e-07 5.3336616e-11 1.2319875e-07 4.8782957e-05 2.1365874e-07 1.9146995e-08 1.9732747e-09 7.1462525e-10 5.938618e-10 6.1967924e-09 6.997802e-08 2.2819035e-05 0.99516803 4.5114642e-17 -1 1 utg000145l 155422 26 plasmid.Proteobacteria 1.6108132e-05 2.7688722e-07 4.1766715e-08 3.3604985e-07 7.1190654e-05 1.1054964e-05 9.4237404e-12 4.8270272e-09 3.2669803e-07 5.4633364e-09 2.7493204e-05 2.7898384e-06 3.6858816e-07 0.005415973 7.22352e-07 4.9533527e-11 1.2928074e-07 3.34594e-05 1.4573058e-08 2.7890676e-08 1.9757225e-09 2.9439587e-10 4.3403672e-10 2.3913744e-09 1.0564903e-07 1.6915072e-05 0.9944026 6.196432e-17 + contig_id contig_name contig_length id label chromosome\.Acidobacteria chromosome\.Actinobacteria chromosome\.Bacteroidetes chromosome\.Chlamydiae chromosome\.Chlorobi chromosome\.Chloroflexi chromosome\.Cyanobacteria chromosome\.DeinococcusThermus chromosome\.Firmicutes chromosome\.Fusobacteria chromosome\.Nitrospirae chromosome\.other chromosome\.Planctomycetes chromosome\.Proteobacteria chromosome\.Spirochaetes chromosome\.Tenericutes chromosome\.Thermotogae chromosome\.Verrucomicrobia plasmid\.Actinobacteria plasmid\.Bacteroidetes plasmid\.Chlamydiae plasmid\.Cyanobacteria plasmid\.DeinococcusThermus plasmid\.Firmicutes plasmid\.Fusobacteria plasmid\.other plasmid\.Proteobacteria plasmid\.Spirochaetes +0 0 utg000144c 128167 26 plasmid.Proteobacteria [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ +1 1 utg000145l 155422 26 plasmid.Proteobacteria [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ [0-9.e-]+ |
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| diff -r bda6012394f7 -r ea270d0ad0e6 test-data/output_plasmids.fasta --- a/test-data/output_plasmids.fasta Thu Sep 27 06:41:19 2018 -0400 +++ b/test-data/output_plasmids.fasta Sat Jan 21 13:49:39 2023 +0000 |
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| @@ -1,4 +1,4 @@ ->utg000144c plasmid.Proteobacteria utg000144c LN:i:128167 RC:i:576 XC:f:1.000000 +>utg000144c plasmid.Proteobacteria utg000144c TTTTCCATCGCCTGCACCGCTTTCTGGCTAAACGCCGCAGAGTCATCGGTGATCACCGGA TTAAACGTTGGGTCCATCGTGCCCATTTTTCCTGATGATGTACCGGAATGTCGCACCCGT GGAAAGCGCCGGTGATAAAGAATTGTGCCGTCGCAACGGTGCGTTGCAGACTGTTGGCAT @@ -2136,7 +2136,7 @@ AATCGGCCCAGATCCGCGAAATTTTAATCAACGAGTCAGCTTGGGAAGACATGACCTGCT TATTCGCACCTTCCTAAAGGCGTCTTTGGCTTCGGTCAGCGAACACTGCTGTTTTTCTTT GCAGGAC ->utg000145l plasmid.Proteobacteria utg000145l LN:i:155422 RC:i:766 XC:f:1.000000 +>utg000145l plasmid.Proteobacteria utg000145l ACTGATGTGTGTATTCATCTTCCTTGTCCTTTTTGACTGCTTTACAGCTTTTCGGCTACA AATTAAGACCAAGCAGAGAATCTTGCCCGCTTTCGCGTCGGGAACTACGCCCCAGCTGTC CCGGTCATTACAACCGGGCATTTTGCTTTCCGTCTCCTCTGCCCGCACCGCCTACAGTGT |
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| diff -r bda6012394f7 -r ea270d0ad0e6 test-data/test.fasta --- a/test-data/test.fasta Thu Sep 27 06:41:19 2018 -0400 +++ b/test-data/test.fasta Sat Jan 21 13:49:39 2023 +0000 |
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| b'@@ -1,4 +1,4 @@\n->utg000144c LN:i:128167 RC:i:576 XC:f:1.000000\n+>utg000144c\n TTTTCCATCGCCTGCACCGCTTTCTGGCTAAACGCCGCAGAGTCATCGGTGATCACCGGATTAAACGTTGGGTCCATCGTGCCCATTTTTCCTGATGATGTACCGGAATGTCGCACCCGTGGAAAGCGCCGGTGATAAAGAATTGTGCCGTCGCAACGGTGCGTTGCAGACTGTTGGCATAGGTATATACCGTGTCCGGCGTCGGGCATTCGCCTGACGTGACCATCCCCAGCTCCGCCAGCCATTCTCGCATGTAGTGGCCCATATAAATTTCCAGCACACCGCCTTTCGTGGTGAGCTGCCCGCCGGGCACATCCCACTCCGGCCACTGATTCGGCGTGGACTGCTCCAGCACGCTGCCATTATTGGCCAACGGCGCGCAAGTTGTGTCGGCTCATCATCAACACTTGTTGCAGTTGATAACCTTCCGGCGTTGTCTGCGCTTGCGCGGCGGACGACAATAAACAGCCCTGCCACAGCGGCGGCGAGTATCAATTTTTCATCCCTACAACCTCTTGTTGTTATCAATCCTCATAGAGTGTGACAGAAATATGACATTTTCCGGGAACGGTTTCGCAAAACGGAGATTCCAGAAGATAACCGGCAGGTCAGCGTGTTCCGGTTACTCCGAGATAAAACCTCATACTTAATATTGCGGGCGCAATAAAAGTGCCGTCCGTCAGATACAGTTCACGAAATCGCGTGTTATCAGAGATGTTGTCCAGCAGGGAACGTTCCGTATCGACAAATTCTTTTGCACGCGGTAATGAACGGCGTTCTCCGTTTCAAAAGAGACATATTCCGTGGTGGCGTAGGGCTTATTTTTTTTGATTTCACGTACACGATATATTGCACGGTACTGGCCGTCAGCCCCGTTTTCGCCGCGATCTCTTTGAGACTCAACGTCTCAGAGGCATAAAGCGCCTGAACCTGCGCTATGCGTCGGTGATTATACGCCGTCACCCGAAGGCTCAGTTTCAGCCGATAGGCCATATTCCGCACGGCGGTAATATTAGTGTGAAGCAGTTGCGCTATCTGCTCTGTCGTGAGGATGCCCGCGTTTTCCCGCAGAATCGCAAGGCTTTCGTCGTTCCAGATAAATGCCATTGGGTATCTCTCCGTACGCGTCGTTCATCGCGCCGCCGGAGCGCGCAAACGTGGCCTCTAACTCAGACGGCTTACGCATACCCCGGTGTAGCTCCAGAACGCGTCCTTCGGAGTCAATCAGTACGGAGGTCGGCGTGCCGATCACCTGATAACGTTCCGGGTAATGTTGAGCTGATCGCGCACCACCGGATAGGTTATCTGATGTTTTGCCAGCAGATCGTTGATCCTGACCGTTTCAGGGTCGGTATTGACCGCCACAACCACCACTTTATCGCCCCATTTTTGCTCAGCGCTTCCAGCGTGTCCATTTCCGCTAGGCACCCCGCATCCCGCAGACCCAAAATTCAGGTACACCGCCTTTCCTTGCCAGCGTTCAAGGCCTGACTCGGCCTTGCAGATCAAACGCCGCCAGCGCCGGGGCCGGTGCCCCGACCGCCAGCTTTTCTTCTTTACACCCGCTTATCAGGATCGCCGCCGCGAGTAACAGCACATTATGCCAGCGCATGTTGATTGGCCTCCTCACCCAGATATTTACCGTGTTGCAGCCGCAGAATACGGTCGGCAAACTGCCCAAGCGCAGGGTTGTGCGTCACCATCACAATCGTGCGCCCCTGACGATGCAGATCGGTGAGCAGATCCAGCACCCGCTGCTCATTCTCTTCATCGGGTTGCCCGTCGGTTCATCCGCGAAAATAACCGGCGGTTCGTTGACCAGCGCCCGGGCGATACACACGCTGCTGCTCACCACCGGAAAGCTGGCTCGGCAGGTGCGTCACACGATGCCCAAGCCCTACCTGTTCCAGCACCTTCCTCGCCGCCGCTTCATCCACCACGCTGTGGTAATGCTGGGCGAGCATGATGTTTTCCAGCGCAGTTAAGAACGGGATCAAATGGAACTGCTGAAATACCGGGCCGATTTTCTCGGCGCGAAAGCGACGGCGCCCCTCTTCATCCAGCGCGGCGGCATCGGTGCCATCAAGAAACACCTGCCCTTCCGTCGCCGTATCAAGGCACGTCAGAATATTCATCAGCGTGGTTTTACCAGAACCAGAAGCGCCCATAATGGCGACAATTCACCCTGCGCAATGCGCAGATTAATGTCATCCGGGGCGGTAACGTCACCGAACCGTTTGTATAAGTGGCGGGTTTCGATCGCCACCTGAGGGATATGCGTAACGGACATGGCGCTACTCTCCTTTCAGCACTTTAGCAGGCTCGACGCTTACCGCGCGTCGCACCGGAACAATCGCCGCCAGAATGGCGACCAGTAAAGACAACACCAGAGTAATGGGCAACACCGGCAGACGCAGTGAAATGGCGGCATTAAACACCGTTAATCCCAACAGTTGCGCCAGCAAATATCCCAGCACCCAGCCGCACGCCACCGCCGCCAGCGCGATGATGCTGGTTTCCAGCAGAATTTGCCGCACGATATCGCCGTTGCTGGAACCAAGCGCTTTTGCAGCGCAAACTCGCGCGCCCGCTCGCCGACAATCGCCATCAGCGTGGTATTCACGCACAGCGAAGAGAGCGCCAGAATCACGATCGAGACCAGTCCCATCAGACCTTTAATTTTATCCAGCACCTGCCCTTCGGAAGCAGAGACCTTACGCACCGGACGAATCTCGTGTCAGGATACTGCGCCTGCAACCGGCTGGCATAGTTCTCCACTGGCCGACATCGTTACTGACGCTCAGCAAGCCGTGGCTGATTTTGCCCGGCTGATGCAGCCAGCCTGCGCCACGTCGAGGCTGACGATCAGCATGTTGTCCGTCGCATCGCCAGACTCCACAATGCCTTTAATCTGCAAATTCTTACGCTGATTGTGATCCACCAGCGTGATGCTGTCGCCCGGCTGCACGTTGAGGCGTTCCGCCAGTTTGACGCCGATCATCGCATTACGGTCGTCAAAACTAACGCCAATCCAGCTACCGGTGACCTGCCAGTACGGCACCAGTTTTGCAGCGACTCGAACCACACGCCAACCATCACCACTTTTTCCAGCTCGGTACGCGCCATGCCGTACAACCACGGACTGGCGCCATGCACCAGCCCTGCGGCGCCTGATCGAGAATGCTCTGCAACTCCTGCTGCGGCATACTGGAACCGTGCCCCGGCCCGATGTAAAATTCGCGCCGAAGGTGCGCAGTTCTTCGCTCATTTTGGTGTTAATGTCGAACCAGACGGCAGAAAGCGCCGTCACGATGGTCGCCCCCACCATCAGCGCGGCAAACACCACGCTGACCCGCTGAAAACGCAGACGCAGCGCCCGCCACACCAGCAGCCAGAGCATGGTACGTTTAGCGGCCATACAGCACCTCCACAGGATACAGCCGGGCAATCCGCCGGGCCGGGAACCAGTGCCGATCAACGCAATCAGTACCGCAATCACCAGTACGCACGGCACCACAATCCGGGCAAAATTAAGCGGCGCGTCGAAGAGCATGACGCCAATCGCTTTCGCCAGCCCCACCCGGCAATACATCCCAGCGCACCGCCAGCCAGCCCGCTGGACGCCGCTTCCGTGTAGAACAGCAGCATAATTTGCCACTGTCGCGCACCCAGCGCTTTCATCAAACCGATCTCTTTGGCGCGTTCCATAATGGTGCTGGTCATCAGCGAGGCGATCCCCATTGCGGAAGCCACCAGCGCCGCGACGGTAACGACCGCCATCAGCAACTGAATTTTATCGATCACCACCCCTTCGGACGCCGCGACCTGCCATACCGGGCGCACTTCCGCACCGGAAATCGCCTCTTCCAGCTGATGCGCGATCGACGACACATAGGCCGTGCAATACCAGAGGTCGTACTC'..b'CGTCGGATGGCTGGCGGCCGGTCCGACATCCACGACGTCTGATCCGACTCGCAGCATTTCGATCGCCGCGGTGACAGCGCCGGCGGGGTCTAGCCGCCGGCTCTCATCGAAGAAGAGTCCTCGGTGAGATTCAGAATGCCGACACCGTCACCATGGCGTCGGCCTCCGCAGCGACTTCCACGATGGGGATCGGGCGAGCAAAAAGGCAGCAATTATGGGCCCCATACCTACAAAGCCCCACGCATCAAGCTTTGCCCATGAAGCAACGGGGCAATGGCTGTAATTATGACGACGCCGAGTCCCGACCAGACTGCATAAGCAACACCGACAGGGATGGATTTCAGAACCAGAGAAAGAAAATAAAATGCGATGCCATAACCGATTATGACAACGGCGGAAGGGGCAAGCAGTAAAGCCCTCGCTAGATTTTTTAATGCGGATGTTGCGTTACTTCGCCAACTATTGCGATAACAAGAAAAAGCCAGCCTTTCATGATATATCTCCCAATTTGTGTAAGGCTTATTATACGCTTAAAAAATAATAAAGCAGACTTGACCTGATAGTTTGGCTGTGAGCAATTTATGTGTAGTGCATCTAACGCCGGGTTAAGCCGCGCGCGTAGTATCAGTCTGAACTGAACAGTGTTAGACATCATTTACCAACTGACTTGATGATCTCGCCTTTCACAAAGCGAATAAATTCTTCAAGTGATCTGCGCGTGAGGCCAAGTGATCTTCTTTTTTGTCCCAGATAAGCTTGCTTAGCTTCAAGTAAGAACAGGCTGATACTGGGCAGGTAGGCGTTTTATTGCCCAGTCGGCAGCGACATCCTTCGGCGCGATTTTGCCGGTTATTGCGCTGTACCAAATGCGGGACAACGTAAGCACTACATTTCGCTCATCGCCGGCCCAGTCGGGCTGCGAGTTCCATAACTTCAAGGTTTCCCTCAGCGCCTCGAATGAATCTGTTCAGGAACCGGGTCAAAGAATTCCTCCGCTGCCGGACCTACCAAGGCAACGCTATGTTCTCTTGCTTTTGTAAGCAGGATAGCTAGATCAATGTCGATCATGGCTGGCTCGAAGATACCCGCAAGAATGTCATTGCGCTGCCATTCTCCAAATTGCAGCTCGCGCTTAGCCGGATAACGCCACGGGATGATGTCGTCATGCACGACAAAGGGTGACTTCTATAGCGCGGGCGTCTCGCTCTCGCCGGGGAAAGCCGAAAGCCTCCATAAGATCATTGAGCAATGCTCGCCGCGTCGTTTCATCAAGCTTTACGGCCACAGTAACCAACAAATCAATATCGCTGTATGGCTTCAGGCCGCCATCCACTGCGGAGCCGTACAAATGCACGGCCAGCAACGTTGATTCCAGATGGCGCTCAATGACGCCGCACCTCTGATAGTTGGTTCGAAATTTCGATGGTCACCGCTTCCCTCATGATGTCTAACGGGCGAAGGTAAAGCCGACCGCAGAATGCGGGTCGGCTTGACCGAAATGTTAGAACCAGAAGCCAAAACGGATAGCAGATTTGGCGACGGGCGCTAACCGTGAAAAACGCTGCGCCACCAGGCGGCACAGCACTGCAAAAACGATAGCTGCTTGCGCTTGCTACGCAAGGGCTAGAGGCCAAAAGACTGAAAACCTGCGCAGCCCATGCAGCAGCGAAGCGGAAAAAAAGGCAAAACAGGCACTGAATAACGCCTGAAAAGCTAAATGCCGTTTGAATAAACATGGCTAAATAAAGCTGGGTTTAAGTGGTGCTAACGTTGGACGTAACGAGAGCCGGAGCGCAGCGGAAGGAACCAAATGCGCAGCATTTGGCGTCCGTTGACGGAATGGTTAGCCGTTTCGACGCGCATAAACAGGTGGGTGTACGGAATTACAGCTTGAATGGTTTCGGTTGAGACAAGCTCGAATTCTGTTTCGTTGAAGCATTGGGAAGAAGGCGTCACCCTCGAAGGTTTGATGTACCTCAGATAGAAACACGCCGTGGGCGTGAGTGTAGTGCCAGAGTGTATATCTCAGCTCCGCCCGCGACGCAGAGTTCATTGCCGAGTTCGGATGCCAAAGCGATAGCGTGCGACAGCGTTGAAACAACTACGCAGCCAGTGGCGCGGTAGTTAACGGCGTGAGATTACCAATGTGTGACGGTTCGGTAGAGGCTTGCCGATAGACTCAAAGGTCTTTCGCCCCATGACAACGACTTTCCCCTCAGTGAGTCTGCGAAAAAAAATCTTCTGCTCACCCGGAATTTTCCGGGGATATTAGGACCATTGCCAATAACCCGATTGGCTCCCATCGCAGCAACGAGATAAATGCGTACTGATTCCGAGTTCATATGGCTAACTTTGTTTTAGGGCGACTGCCCTGCTGCATGTATCGTTGCTGCTCCATAACATCAAACATCGACCCACGGCGTAACGCTTGCTGCTTGGATGCCCGAGGCATAGACTGTACAAAAAAAAAAACAGTCATAACAAGCCATGAAAACCGCCACTGCGCCGTTACCACCGCTGCGTTCGGTCAAGGTTCTGGACCAGTTGCGTGAGCGCATACGCTACTTGCATTACAGCTTACCAACCGAACAGGCTTATGTCCACTGGGTTCGTGCCTTCATCCGTTTCCACGGTGTGCGTCACCCAGCAACCTTGGGCAGCAGCGAAGTCGAGGCATTTCTGTCTGGCTGGCGAACGAGCGCAGGTTTCGGTCTCCACGCATCGTCAGGCATTGGCGGCCTTGCTGTTCTTCTACGGCAAGGTGCTTTGTACTGGATCTGCCACGGCTTCAGGAGATCGGAAGACCTCGGCCGTCGCGGCGCTTGCCGGTGGTGCTGACCCCGGATGAAGTGGTTCGCATCCTCGGTTTTCTGGAAGGCGAGCATCGTTTGTTCGCCCAGCTTCTGTATGGAACGGGCATGCGGATCGTGAGGTTTGCAACTGCGGGTCAAGGATCTGGATTTCGATCACGGCACGATCATCGTGCGGGAGGGCAAGGGCTCCAGGATCGGGCCTTGATGTTGCCGGAAGCTTGGCACCCAGCCTGCGCGAGCAGCTGTCGCGTGCACGGGCATGGTGGCTGAAGGACGGGCCGAGGGCCGCAGCGGCGTTGCGCTTCCCGACGCCTTGAGCGGAAGTATCCGCGCGCCGGGCATTCCTGGCCGTGGTTCTGGGTTTGCGCAGCACACGCATTCGACCGATCCACGGGGCGGTGTCGTGCGTCGCCATCACATGTATGACCAGACCTTTCAGCGCGCCTTCAAACGTGCCGTAGAACAAGCAGGCATCACGAAGCCCGCCACACCGCACACCCTCCGCCACTCGTTCGCGACGGCCTTGCTCCGCAGGGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCCTTACATTTCAAAAAAAAACTCTGCTTACCGGGCGCATTTCGCCAGGGGATCACCATAATAAAATGCTGAGGCACGGCCTTTGCGTAGTGCACGCATCACCTCAATACCTTTGATGGTGGCGTAAAGCCGTCTTCATGGATTTAAATCCCAGCGTGGCGCCGATTATCCGTTTCAGTTTGCCATGATCGCATTCAATCACGTTGTTCCGGTACTTAATCTGTCGGTGTTCAACGTCAGACGGGCGCCGGCCTTCGCGTGTTTGAGCAGAGCAAGCGCGACCATAGGCGGGCGCTTTATCCGTGTTGATGAATCGCGGGATCTGCCACTTCTTCACGTTGTTGAGATTTTGCAGAAACCGGTATGCAGCTTTGCTGTTACGACAGGAGGAGAGATAAAATCGACAGTGCAGCCCCGGCTGTCGACGGCCCGGCTACAGATACGCCCAGCGGCCATTGACCTTCACGTAGGTTTCATCCATGTGCCACGGGCAAAGATCGGAAGGGTTACGCCAGTACCAGCGCAGCCGTTTTCCATTTCAGGCGCATAACGCTGAACCCAGCGGTAAATCGTGGAGTGATCGACATTCACTCCGCGTTCAG\n' 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| diff -r bda6012394f7 -r ea270d0ad0e6 test-data/test.fasta.gz |
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| Binary file test-data/test.fasta.gz has changed |