| Previous changeset 0:e3aee4ba49c6 (2017-10-15) Next changeset 2:321cad0eb507 (2021-03-16) |
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Commit message:
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit f527add7e7bace30b8bc67524ff1da1bf920ec29" |
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modified:
cherry_pick_fasta.py cherry_pick_fasta.xml test-data/input.fa |
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added:
test-data/output_termlist.fa test-data/output_termlist_without.fa test-data/output_without.fa test-data/termlist.txt |
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| diff -r e3aee4ba49c6 -r ea8fde9c6f82 cherry_pick_fasta.py --- a/cherry_pick_fasta.py Sun Oct 15 13:26:45 2017 -0400 +++ b/cherry_pick_fasta.py Wed Oct 09 18:48:17 2019 -0400 |
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| @@ -12,27 +12,78 @@ description="Cherry pick fasta sequences") the_parser.add_argument('--input', action="store", type=str, help="input fasta file") + the_parser.add_argument('--searchfor', action="store", type=str, + help="with, without, or withlist, withoutlist") the_parser.add_argument('--query-string', dest="query_string", action="store", type=str, - help="header containing the string will be\ - extracted as well as the corresponding\ - sequence") + help="headers containing the string will be \ + extracted or excluded as well as the \ + corresponding sequence") + the_parser.add_argument('--query-file', dest="query_file", + action="store", type=str, + help="headers containing any of the strings provided in the \ + text file (1 string per line) will be \ + extracted or excluded as well as the \ + corresponding sequence") + the_parser.add_argument( '--output', action="store", type=str, help="output fasta file") args = the_parser.parse_args() return args +def parse_fasta_with(query, FastaListe): + if not isinstance(query, list): + query = [query] + accumulator = [] + for sequence in FastaListe: + for string in query: + if string in sequence: + accumulator.append(sequence) + continue + return accumulator + + +def complement_fasta(fullfasta, subfasta): + return list(set(fullfasta) - set(subfasta)) + + +def getquerylist(file): + querylist = [] + for line in open(file, 'r'): + querylist.append(line.rstrip()) + return querylist + + def __main__(): """ main function """ args = Parser() - search_term = args.query_string + searchterm = args.query_string CrudeFasta = open(args.input, "r").read() Output = open(args.output, "w") - FastaListe = CrudeFasta.split(">") - for sequence in FastaListe: - if search_term in sequence: - Output.write(">%s\n" % sequence.rstrip()) + FastaListe = CrudeFasta.split(">")[1:] + if args.query_string: + if args.searchfor == 'with': + contList = parse_fasta_with(searchterm, FastaListe) + contFasta = ">%s" % ">".join(contList) + Output.write(contFasta) + elif args.searchfor == 'without': + notcontList = complement_fasta(FastaListe, + parse_fasta_with(searchterm, + FastaListe)) + notcontFasta = ">%s" % ">".join(notcontList) + Output.write(notcontFasta) + if args.query_file: + searchlist = getquerylist(args.query_file) + if args.searchfor == 'with': + contList = parse_fasta_with(searchlist, FastaListe) + contFasta = ">%s" % ">".join(contList) + Output.write(contFasta) + elif args.searchfor == 'without': + notcontList = complement_fasta(FastaListe, parse_fasta_with( + searchlist, FastaListe)) + notcontFasta = ">%s" % ">".join(notcontList) + Output.write(notcontFasta) Output.close() |
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| diff -r e3aee4ba49c6 -r ea8fde9c6f82 cherry_pick_fasta.xml --- a/cherry_pick_fasta.xml Sun Oct 15 13:26:45 2017 -0400 +++ b/cherry_pick_fasta.xml Wed Oct 09 18:48:17 2019 -0400 |
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| @@ -1,44 +1,94 @@ -<tool id="cherry_pick_fasta" name="Pick Fasta sequences" version="1.0.0"> - <description>with header satisfying a query string</description> +<tool id="cherry_pick_fasta" name="Pick Fasta sequences" version="2.0.0"> + <description>with header satisfying a string query</description> <command interpreter="python">cherry_pick_fasta.py --input $input - --query-string "$query" + --searchfor '$search.searchfor' + #if $search.options_selector == 'single': + --query-string '$search.query' + #else: + --query-file '$search.query' + #end if --output $output </command> <inputs> - <param name="query" type="text" size="30" value="" label="Select sequences with this string in their header" help="exemple: gi|40557596"> - <sanitizer> - <valid initial="string.printable"> - <remove value="""/> - <remove value="\"/> - </valid> - <mapping initial="none"> - <add source=""" target="\""/> - <add source="\" target="\\"/> - </mapping> - </sanitizer> - </param> - <param format="fasta" label="Source file" name="input" type="data" /> + <param name="input" type="data" format="fasta" label="Source file" help="Fasta file to parse" /> + + <conditional name="search"> + <param name="options_selector" type="select" display="radio" label="by single term or file of terms"> + <option value="single" selected="True">single term</option> + <option value="textdataset">terms in a text dataset</option> + </param> + <when value="single"> + <param name="query" type="text" size="30" value="" label="Search string" help="exemple: gi|40557596"> + <sanitizer> + <valid initial="string.printable"> + <remove value="""/> + <remove value="\"/> + </valid> + <mapping initial="none"> + <add source=""" target="\""/> + <add source="\" target="\\"/> + </mapping> + </sanitizer> + </param> + <param name="searchfor" type="select" label="retrieve sequences whose headers contain or do not contain the search string"> + <option value="with" selected="true">contain</option> + <option value="without">do not contain</option> + </param> + </when> + <when value="textdataset"> + <param name="query" type="data" format="txt" label="term dataset" help="a list of term to search for, one term per line" /> + <param name="searchfor" type="select" label="retrieve sequences whose headers contain or do not contain the search list"> + <option value="with" selected="true">contain</option> + <option value="without">do not contain</option> + </param> + </when> + </conditional> </inputs> <outputs> - <data name="output" format="fasta" label="${tool.name} on ${on_string} including '${query.value}' in header" /> + <data name="output" format="fasta" label="Fasta sequences ${search.searchfor.value} ${search.options_selector} term(s) in header" /> </outputs> <tests> <test> <param ftype="fasta" name="input" value="input.fa" /> + <!-- <param name="options_selector" value="textdataset" /> --> <param name="query" value="gi|81971654" /> + <param name="searchfor" value="with" /> <output name="output" ftype="fasta" file="output.fa" /> </test> + <test> + <param ftype="fasta" name="input" value="input.fa" /> + <!-- <param name="options_selector" value="textdataset" /> --> + <param name="query" value="RNA" /> + <param name="searchfor" value="without" /> + <output name="output" ftype="fasta" file="output_without.fa" /> + </test> + <test> + <param ftype="fasta" name="input" value="input.fa" /> + <param name="options_selector" value="textdataset" /> + <param name="query" ftype="txt" value="termlist.txt" /> + <param name="searchfor" value="without" /> + <output name="output" ftype="fasta" file="output_termlist.fa" /> + </test> + <test> + <param ftype="fasta" name="input" value="input.fa" /> + <param name="options_selector" value="textdataset" /> + <param name="query" ftype="txt" value="termlist.txt" /> + <param name="searchfor" value="without" /> + <output name="output" ftype="fasta" file="output_termlist_without.fa" /> + </test> </tests> + <help> **What it does** -This tool retrieves nucleotide/peptide sequences from a fasta file whose headers match a given query string. +This tool retrieves nucleotide/peptide sequences from a fasta file whose headers match +or do not match a given string. -It is Copyright © 2015 `CNRS and University Pierre et Marie Curie`_ and is released under the `MIT license`_. +It is Copyright © 2019 `CNRS and Sorbonne-Université`_ and is released under the `MIT license`_. -.. _CNRS and University Pierre et Marie Curie: http://www.upmc.fr/en/index.html +.. _CNRS and Sorbonne-Université: http://www.sorbonne-universite.fr/en .. _MIT license: http://opensource.org/licenses/MIT </help> |
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| diff -r e3aee4ba49c6 -r ea8fde9c6f82 test-data/input.fa --- a/test-data/input.fa Sun Oct 15 13:26:45 2017 -0400 +++ b/test-data/input.fa Wed Oct 09 18:48:17 2019 -0400 |
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| b'@@ -107,7 +107,6 @@\n ACTGTGCGTCCAAAAGAGGCTTATCGTCTAGTCGAAGAAGGATCAACCGGCAATAAGCAG\n TATCGTTTGGACAAAACGAAAACCAAAGGAGCTATCGATCTCGATGTGTACGAATTCGTG\n CGC\n-\n >gi|21321709|ref|NP_647481.1|_nonstructural_polyprotein__Cricket_paralysis_virus--Locus_65_Transcript_2/2_Confidence_0.333_Length_1324_hit1_IdMatch=43.5,AligLength=446,E-val=1e-119\n CTTGAGGATACTTTACCAGGTATGGTCGAGCACGTTACGCTCGTAGCACAAAATACATCC\n GCGTCAGCCAAGGTGTTATCTGACGAGTTGATCAAATCAATGCTTTGCATTGTTTTGATT\n@@ -217,7 +216,6 @@\n GGAGATTGTGGTGCCTTGCTGGTAGCACAAAATCATGCAATTGTGAGGAAAATATTTGCA\n ATGCATATAGCAGGTGCGGAAGAAAATGGCTATGCTTGTCCAATCAATCAGGAAATGTTA\n G\n-\n >gi|8895507|gb|AAF80998.1|_nonstructural_polyprotein__cricket_paralysis_virus--Locus_65_Transcript_2/2_Confidence_0.333_Length_1324_hit1_IdMatch=43.5,AligLength=446,E-val=1e-119\n CTTGAGGATACTTTACCAGGTATGGTCGAGCACGTTACGCTCGTAGCACAAAATACATCC\n GCGTCAGCCAAGGTGTTATCTGACGAGTTGATCAAATCAATGCTTTGCATTGTTTTGATT\n@@ -327,7 +325,6 @@\n GGAGATTGTGGTGCCTTGCTGGTAGCACAAAATCATGCAATTGTGAGGAAAATATTTGCA\n ATGCATATAGCAGGTGCGGAAGAAAATGGCTATGCTTGTCCAATCAATCAGGAAATGTTA\n G\n-\n >gi|798547303|gb|AKA63265.1|_nonstructural_polyprotein__Cricket_paralysis_virus--Locus_63_Transcript_2/2_Confidence_0.333_Length_343_hit1_IdMatch=53.45,AligLength=116,E-val=4e-32\n ACACAGTCCACAGTCCGAAGACCAAAGCGTTGGATAGGACACGAATACACAGATGAAACG\n AAAACAGGCGAGGCTGCGCCCTATCGGACATTGGAAGAAGTCCGTTTCCTTAAAAGAGGG\n@@ -385,21931 +382,117 @@\n TGGAAGAAGTCCGTTTCCTTAAAAGAGGGTTCAGAATGGATCACCTCTTGTGTCGGTGGG\n TAGCTCCTTTGAAGAAGGATGTCATCTACGAAATGCTTAATTGGACGCGCAAAGGGATTA\n ACCCAGATGATGTGACGATGATGATCATTGATACAGCATTTAGGGAGATCTCTTATCACG\n-GAAGGGAAGCTTTCGAGAAGCTGCGAGGGCAGATACTTGAGCAGCGGGATGTGTTGGTTG\n-AATATCCTCAA\n->gi|798547303|gb|AKA63265.1|_nonstructural_polyprotein__Cricket_paralysis_virus--Locus_50_Transcript_1/1_Confidence_0.000_Length_1442_hit1_IdMatch=25.51,AligLength=537,E-val=1e-49\n-GAATTCGTGCGCATGCAAAGAATAAATGACCACCCTTCGGGTTGGAAAGCTACGGATGAA\n-GTATATGGCTATGCAGAGTTCTCGAAACTAATGTGTGCTGAATGGAAGAGAAGGAAGACA\n-GAACATCAGAATACTGTTGACTTCCTTAAGAAGTATGCAGAGCGACCCTTCGAGACCAAC\n-CCCGGACCAGTGGAGGATATCCCAATAAGACACGATGATGTCGAGCAGGGGGTAGAAGCG\n-CAGATGGGTCGAGATGCAGATTGGTTTAACAATGACATAGCGGAACGTATAGCGCGTGGA\n-CAGGATATTACTGATATCTTGTATGAGTATGCTGAAGATGACGAGTTGCATGAGGATTAC\n-ATGGCTTACAAGAAACAGCAGGCCCAGCCTAGTAAGTGGGACAAATACGCGCGCCGTCTC\n-GAAAGTGCAATTACGGAAGGAAAGAATTTCCTTGCCCGTGTGGTTTCAAAAATAGCCAGC\n-GTCATTCGGGAGAACCCATATTTGACCATGATGGCAACTGTGGGGAGCGTTCTCGCTCTG\n-TATGGAGCTATGCGTTGGTTTTCGAAAGGAGTAACGGAGACTTTTGACGCTGAAGAAGTT\n-ACTATTCCCAACGAAACCAAGGTAGAGAACGTTGTGCGTACGGAGGGTTTTGAATCTTAC\n-GACCATCGGACTCCGCGCGCTCATCGAGCCAACAGGCAATATGTGCGAGCTGAGGCGATG\n-ATAGATGAAACAGGGTACCTGGTAGCCAACAACAAAGTCACTGGCAACACGTATCGAATG\n-TGTATCAAGAGGGATCCTGATGATTTGGTCGTTGGAAACGCTGTGTTTATCACAGGGTGG\n-ACGCTCCTCATACCGTACCACTTCGTTTGTGGACTGGCGGGACGGAGAATAGCTGCTGAT\n-TCCATCGTGACTTTGTCAAAGCCAGGCTTGGATAAGATTATTGAATTCCCGTTGTCACGA\n-ATCTTCCGATACGATACCTCACCAGATGGTTTTACCACTAGTGAGTATTGTGCTCGAATG\n-GAACATGAAGATGGAGAATTGGTTGATGCCATCCTGGTAAACCTGCATGGTTTGGGAGTG\n-CGAATCCATCCTGACCTCCGGGGAAAAATTGTGACGGTACGAGACCAAGCGCACCTGAGT\n-ACGACATTTCATGCGATTCTCACAACGATGTCCAGGAAGCCACCACTAACAACGTCACAA\n-CAAGTGGTAAAAGGGGTCAAGCCAATGGATAAAATCCTGCACATCAATTTACCAGTTGGG\n-GACAAAACAACGCAATACACCCAACGTGACTGTTACAAGTATTATTCCGTAACGGTCGTT\n-GGAGATTGTGGTGCCTTGCTGGTAGCACAAAATCATGCAATTGTGAGGAAAATATTTGCA\n-ATGCATATAGCAGGTGCGGAAGAAAATGGCTATGCTTGTCCAATCAATCAGGAAATGTTA\n-G\n->gi|798547303|gb|AKA63265.1|_nonstructural_polyprotein__Cricket_paralysis_virus--Locus_65_Transcript_1/2_Confidence_0.667_Length_1344_hit1_IdMatch=43.68,AligLength=451,E-val=2e-123\n-TAGATAAGGTTTGCTCATTTCTTGAGGATGCTTTACCAGGTATGGTCGAGCACGTTACGC\n-TCGTAGCACAAAATACATCCGCGTCAGCCAAGGTGTTATCTGACGAGTTGATCAAATCAA\n-TGCTTTGCATTGTTTTGATTTGCTTGTTGATTGAAACCAAGTTCTATAAGACCGCTTTCG\n-CGGTACTTATAGTGGTTGCTCTACGTGTTTTCGGGTACAGTGAGCAAATAATTGAGACAG\n-CTATGGACATGTATCGCGTAATTAGGGCTCCAAAGGCTCAAGGTAATATGGAAGATGTCG\n-TTTTCCATCCGTGGTTGAACACGTGTGGAAAGTTGATTTTCCTACTTATCGCTGTCCTGT\n-GTCTCAAGAAATTACCAGGAAAGAACGACGTAGACACTTTCATGCGCAGGCTCGACAGCT\n-TACCCAAAGCTGTTAAGGGTGCGACACAACTACATGAATGGGTGTCAAAATACTTCGATC\n'..b'AAAACATCTGCAGTATTATCGA\n+AATCAAGACGAGGTTTGGAAGCGCTTGAAGCATCTGAATATAGAAGCATCAATCGTGTTG\n+AACGAGCGTTAGAGATGGTACTCAAATTAGTTCAAAGACAACAAAATGATAGAAGACAAC\n+GAGCGATAGCAGGCGAACCAAATTCCATTCTATTACTGACCCTTGTTTATTATGTTATCT\n+TATCGGCTATGTACGCCATGTCGACAGATGCAGCTCAAGGTAAACAGGTTGGTAATTCAA\n+TGGACCTTCAAGACTTGTTATTCGCGACAACTCAGACGGACACGCTTGTGTCATCAATTG\n+ATATTGTAGGTATGGATGCTTCTGTGCAGTCAATAACTACTGAGTTGTCAAATATTATCT\n+GTCTTGAAGTGACGCGTGGTTTACCTGAATCACAAATTGGACCATTTACAGGCGGTATGA\n+AGCGTCTTCTGCAACTAAGTGATGAACCTGGTGGAGCGTGGAAGCAGGTTGAGATGTATG\n+TATCAGGTACACTTGAGGCCGTGGTATTCGAAGGTAGTCATGCACTAACATCAACTACTT\n+ACGAGAGTAAGATTTTTGGAAGTGTTAAGAACTATGCGGGTACGTATCCCTCAGGTAGAG\n+CTGACACGTCGTCACATCACACTAAGGTTTTGGAAGGTGCGACCCGTGGTAATGAAATGC\n+GAAGAAGAACGGATGAGCGAATCGTGCACCATGCGTCGACGATTGTAATGTCACGTAATA\n+TGGGTGATGATAAGTCAGACGTATACACAGGATCATTTCCAAATGTTATATCACAATTAG\n+TGAGCGATAAAGATGTACTCGCACAATTGGGTTTTAAGACAGATGCAGATCTCTCGAGTC\n+ACAACGGAGAATTCTTGCAACAACATGTATGTAGAGGAAGGCTAGTCGGAAAACCATCAC\n+GTATATCAATAGGCACAGTAGAGCATCGTAAAGAGAAGGTTCGGATGCATGAAGCATGTC\n+AAGAACTTCTATCTATTATGGATGACCTAATTGTGCGTATTAGAGATACCGAGGGCTTGA\n+AGATGATGATCTTCTCGTTTGCTATACATTGCATTAATAGTATTGTATTAAACATTGCGA\n+AAGTTGATCTTGCCGCTATAATATCGAAATTGACTTCAAATAATTTGCGTACATATGTAT\n+ATCCTACGAAAGATGAACATGCTTTTCAGCTCGTTAGATTGTATTTTCCATTGATGTGGT\n+TCTTTATGCATAAAGGTGGTGAATTACCAGCTTATCCAATTGAACGGGTTGATGGTACTT\n+ATACAGATGACGAGTCGGTGTACACTGTGCGAGGTGAATACAAACGAAGATTGATGTTTG\n+ATATTATAGGTATTGATAAAATTGAGAAATTTGGTGACGCCATTTTCAGAAATAATCACT\n+GCTTTGATATCGGTTTGAACGCTGCTGATGCCATCATTAAGCTGAAGATAACGGATCTAC\n+CGAAGGAAATGAGAAGTGAAACGCTCGAGCATGGTATCATATCAAATCTAGCGAAAAATT\n+TAGAGTCATTCGGCAATGCTATGTCTAAGGAAGCTTCACTTCAAGCGAAACTCAGGATTG\n+AAAATGAACTTGCAGGTGTTAGGAGCGTAACTCAGACAAATGAAGTTGTCGTTGGAAGAG\n+GAAAGATAGCAAAAGTCCCAAAAAGTATTGTATACGCACATCGAACTGAAGCACAACTTG\n+AACAGATATTAATGACAAGAGAGTCGGATAATGAAGAGCGACCAATGATATCAAAGCGAA\n+TGCTTGATCACATCGCTTCACTATCGTTTCATCATGTTGTTAATGTCAAGACAACGGATA\n+AGTTACACTTGTATTACTTCTATCCTAGTGGCGATGCCCTAGTTTACGGTAATCATGCAA\n+AATACACTGAACATTTCGAATTAGCTCCACCTATGTGGTATTTGTCACCTTCATGGCGTT\n+TATATGGCCTATTAGGTACAGCGTCACAGACACGTGGTGACTTACTTCGACAAATTAATT\n+GGCTAAAAGGTAAATATGGAACGTTTAAGCTTGATGACGAGAAGATCCGTTATGGATATG\n+ATGTTATCTGGCGAAAGAACAGACATCTGCTTAATGACTACATGACAATGATCGGAGCAT\n+CACCACATCTTGAAAACTTGCTTAAGAGCATCTTTCGTTTGATGGATAGATGGGGTACTT\n+ATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTATCTCAGACAATCCATTAG\n+TCGCTGAACAGAACATTATCTTCGCTGCAGATGGTGACGAGATAACTAGGCCCTTACAGG\n+TAATTGTCGGCTATCTACATATACTTGCGCAT\n+>gi|722158941|ref|YP_009104379.1|_RNA-dependent_RNA_polymerase__Fako_virus--Locus_27_Transcript_6/7_Confidence_0.333_Length_1626_hit1_IdMatch=21.78,AligLength=473,E-val=8e-19\n+CTCGCTCATGTCAAGAACTTCTATCTATTATGGATGACCTAATTGTGCGTATTAGAGATA\n+CCGAGGGCTTGAAGATGATGATCTTCTCGTTTGCTATACATTGCATTAATAGTATTGTAT\n+TAAACATTGCGAAAGTTGATCTTGCCGCTATAATATCGAAATTGACTTCAAATAATTTGC\n+GTACATATGTATATCCTACGAAAGATGAACATGCTTTTCAGCTCGTTAGATTGTATTTTC\n+CATTGATGTGGTTCTTTATGCATAAAGGTGGTGAATTACCAGCTTATCCAATTGAACGGG\n+TTGATGGTACTTATACAGATGACGAGTCGGTGTACACTGTGCGAGGTGAATACAAACGAA\n+GATTGATGTTTGATATTATAGGTATTGATAAAATTGAGAAATTTGGTGACGCCATTTTCA\n+GAAATAATCACTGCTTTGATATCGGTTTGAACGCTGCTGATGCCATCATTAAGCTGAAGA\n+TAACGGATCTACCGAAGGAAATGAGAAGTGAAACGCTCGAGCATGGTATCATATCAAATC\n+TAGCGAAAAATTTAGAGTCATTCGGCAATGCTATGTCTAAGGAAGCTTCACTTCAAGCGA\n+AACTCAGGATTGAAAATGAACTTGCAGGTGTTAGGAGCGTAACTCAGACAAATGAAGTTG\n+TCGTTGGAAGAGGAAAGATAGCAAAAGTCCCAAAAAGTATTGTATACGCACATCGAACTG\n+AAGCACAACTTGAACAGATATTAATGACAAGAGAGTCGGATAATGAAGAGCGACCAATGA\n+TATCAAAGCGAATGCTTGATCACATCGCTTCACTATCGTTTCATCATGTTGTTAATGTCA\n+AGACAACGGATAAGTTACACTTGTATTACTTCTATCCTAGTGGCGATGCCCTAGTTTACG\n+GTAATCATGCAAAATACACTGAACATTTCGAATTAGCTCCACCTATGTGGTATTTGTCAC\n+CTTCATGGCGTTTATATGGCCTATTAGGTACAGCGTCACAGACACGTGGTGACTTACTTC\n+GACAAATTAATTGGCTAAAAGGTAAATATGGAACGTTTAAGCTTGATGACGAGAAGATCC\n+GTTATGGATATGATGTTATCTGGCGAAAGAACAGACATCTGCTTAATGACTACATGACAA\n+TGATCGGAGCATCACCACATCTTGAAAACTTGCTTAAGAGCATCTTTCGTTTGATGGATA\n+GATGGGGTACTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTATCTCAG\n+ACAATCCATTAGTCGCTGAACAGAACATTATCTTCGCTGCAGATGGTGACGAGATAACTA\n+GGCCCTTACAGGTAATTGTCGGCTATCTACATATACTTGCGCAT\n' 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| diff -r e3aee4ba49c6 -r ea8fde9c6f82 test-data/output_termlist.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output_termlist.fa Wed Oct 09 18:48:17 2019 -0400 |
| b |
| b'@@ -0,0 +1,5187 @@\n+>gi|157065140|gb|ABV04399.1|_p3__Heliothis_armigera_cypovirus_5--Locus_27_Transcript_6/7_Confidence_0.333_Length_1626_hit1_IdMatch=24.9,AligLength=494,E-val=2e-33\n+CTCCTCGCTCATGTCAAGAACTTCTATCTATTATGGATGACCTAATTGTGCGTATTAGAG\n+ATACCGAGGGCTTGAAGATGATGATCTTCTCGTTTGCTATACATTGCATTAATAGTATTG\n+TATTAAACATTGCGAAAGTTGATCTTGCCGCTATAATATCGAAATTGACTTCAAATAATT\n+TGCGTACATATGTATATCCTACGAAAGATGAACATGCTTTTCAGCTCGTTAGATTGTATT\n+TTCCATTGATGTGGTTCTTTATGCATAAAGGTGGTGAATTACCAGCTTATCCAATTGAAC\n+GGGTTGATGGTACTTATACAGATGACGAGTCGGTGTACACTGTGCGAGGTGAATACAAAC\n+GAAGATTGATGTTTGATATTATAGGTATTGATAAAATTGAGAAATTTGGTGACGCCATTT\n+TCAGAAATAATCACTGCTTTGATATCGGTTTGAACGCTGCTGATGCCATCATTAAGCTGA\n+AGATAACGGATCTACCGAAGGAAATGAGAAGTGAAACGCTCGAGCATGGTATCATATCAA\n+ATCTAGCGAAAAATTTAGAGTCATTCGGCAATGCTATGTCTAAGGAAGCTTCACTTCAAG\n+CGAAACTCAGGATTGAAAATGAACTTGCAGGTGTTAGGAGCGTAACTCAGACAAATGAAG\n+TTGTCGTTGGAAGAGGAAAGATAGCAAAAGTCCCAAAAAGTATTGTATACGCACATCGAA\n+CTGAAGCACAACTTGAACAGATATTAATGACAAGAGAGTCGGATAATGAAGAGCGACCAA\n+TGATATCAAAGCGAATGCTTGATCACATCGCTTCACTATCGTTTCATCATGTTGTTAATG\n+TCAAGACAACGGATAAGTTACACTTGTATTACTTCTATCCTAGTGGCGATGCCCTAGTTT\n+ACGGTAATCATGCAAAATACACTGAACATTTCGAATTAGCTCCACCTATGTGGTATTTGT\n+CACCTTCATGGCGTTTATATGGCCTATTAGGTACAGCGTCACAGACACGTGGTGACTTAC\n+TTCGACAAATTAATTGGCTAAAAGGTAAATATGGAACGTTTAAGCTTGATGACGAGAAGA\n+TCCGTTATGGATATGATGTTATCTGGCGAAAGAACAGACATCTGCTTAATGACTACATGA\n+CAATGATCGGAGCATCACCACATCTTGAAAACTTGCTTAAGAGCATCTTTCGTTTGATGG\n+ATAGATGGGGTACTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTATCT\n+CAGACAATCCATTAGTCGCTGAACAGAACATTATCTTCGCTGCAGATGGTGACGAGATAA\n+CTAGGCCCTTACAGGTAATTGTCGGCTATCTACATATACTTGCGCATATTAATACGATTT\n+TTACACGACCACAAGTAAAGTTAACTGAGCATCTTATTGAATATATGCATCAGCGAGCTG\n+TACATACAGGAAGGTCG\n+>gi|584614105|gb|AHJ14783.1|_VP3__Orgyia_pseudotsugata_cypovirus_5--Locus_27_Transcript_1/7_Confidence_0.444_Length_3872_hit1_IdMatch=28.76,AligLength=1217,E-val=4e-139\n+GTGGTATAGCTCTCAGCGCTACGGTTATAGTACCTCAGAGTATTTTGAAGCCACCACCTT\n+TCAACGAGAAAGACTGGCCTTTGAATGAAGACGAGAGTATGTTCAGTGCCTCGCGCAAGT\n+ATAATTACATGATAAATACTAGTACGTTGAGCCTTTATGGTTCGAGGGAAAGTTTAGTCG\n+GTAAAGCAATATACGGTTTATATACTGATGAGCAATCACAGTCACGCTTCAGGACAGTAT\n+GGCATCAAATAATGGCAAGTGTCTACGCACTAGACGATTATCTAGGTCATACTAACCATC\n+CAGTTCGTGCAGTGTTGGCACAGTTAAACTTAGACAAAGGATTACCATTCAAGGAAACTG\n+CTGAAGGTATTGACTTAACAGAGGCGGTTGAAAAAGGAATTGATTCGAGTACATTACTAC\n+CATCAATATTATATATGTTGATCTCAGTATCGTGCGATATCTGTTTCGGAATTTCAACTG\n+AAGTTGAAGGTGCCTTTACGATCAATCATTATCTTAATCTAGCACAGCATGATTACGCGG\n+ATGAGAAGTTACGAATTAAGTCGGCATGTCGTAATTGGTTTGCACAAGCATTGAGTAAAC\n+TAGACGTCATAGCTTACCCAGTTTATAACAATCAGCTCGAGATCATCGACCTAAAGTATG\n+TACATGGTAAAGAGCCAAAGTATGTAAGCACATTACATGAAAAAGTTGCCGAATCACGTC\n+AACGTAAGCTGTCAAAATACCCATACTTACTGGAATATATTGATAGGTCACGTAAAGCGA\n+AAACGGTGGAGGAATTAATCCATAGACTTTTAGTGATGAATGCACTTTCAAACGACCGCT\n+CTTTCTATAAAACACGGACGGAATTATCATTAGACGCGGCGGTAAAATCAGAGGTGCGAG\n+AGCACTTAGTTAGTGCTCCGGTCGCTAAATTGATTGACCCTCAGTCTAATCGAATCTATC\n+AGAAGTACTTTATTAGAGAAAGGAATGAAGCAATGTACTATGCTCAACAGTACTTATTAA\n+GCTTTGTCCCAGCATTGATCCAACAACTGAGCAAAACCAACTTTGATGAGGAATGGTTAC\n+GATTTTTAACCACATCTTCACCTGGAGTCAAATTACCTCAAGAAACGCTAGACAGCCTGA\n+GTAAAACATCTGCAGTATTATCGAAATCAAGACGAGGTTTGGAAGCGCTTGAAGCATCTG\n+AATATAGAAGCATCAATCGTGTTGAACGAGCGTTAGAGATGGTACTCAAATTAGTTCAAA\n+GACAACAAAATGATAGAAGACAACGAGCGATAGCAGGCGAACCAAATTCCATTCTATTAC\n+TGACCCTTGTTTATTATGTTATCTTATCGGCTATGTACGCCATGTCGACAGATGCAGCTC\n+AAGGTAAACAGGTTGGTAATTCAATGGACCTTCAAGACTTGTTATTCGCGACAACTCAGA\n+CGGACACGCTTGTGTCATCAATTGATATTGTAGGTATGGATGCTTCTGTGCAGTCAATAA\n+CTACTGAGTTGTCAAATATTATCTGTCTTGAAGTGACGCGTGGTTTACCTGAATCACAAA\n+TTGGACCATTTACAGGCGGTATGAAGCGTCTTCTGCAACTAAGTGATGAACCTGGTGGAG\n+CGTGGAAGCAGGTTGAGATGTATGTATCAGGTACACTTGAGGCCGTGGTATTCGAAGGTA\n+GTCATGCACTAACATCAACTACTTACGAGAGTAAGATTTTTGGAAGTGTTAAGAACTATG\n+CGGGTACGTATCCCTCAGGTAGAGCTGACACGTCGTCACATCACACTAAGGTTTTGGAAG\n+GTGCGACCCGTGGTAATGAAATGCGAAGAAGAACGGATGAGCGAATCGTGCACCATGCGT\n+CGACGATTGTAATGTCACGTAATATGGGTGATGATAAGTCAGACGTATACACAGGATCAT\n+TTCCAAATGTTATATCACAATTAGTGAGCGATAAAGATGTACTCGCACAATTGGGTTTTA\n+AGACAGATGCAGATCTCTCGAGTCACAACGGAGAATTCTTGCAACAACATGTATGTAGAG\n+GAAGGCTAGTCGGAAAACCATCACGTATAT'..b'TTTCGTTTGATGGATAGATGGG\n+GTACTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTATCTCAGACAATC\n+CATTAGTCGCTGAACAGAACATTATCTTCGCTGCAGATGGTGACGAGATAACTAGGCCCT\n+TACAGGTAATTGTCGGCTATCTACATATACTTGCGCATATTAATACGATTTTTACACGAC\n+CACAAGTAAAGTTAACTGAGCATCTTATTGAATATATGCATCAGCGAGCTGTACAT\n+>gi|330688232|gb|AEC32894.1|_RNA-dependent_RNA_polymerase__Rice_ragged_stunt_virus--Locus_27_Transcript_2/7_Confidence_0.333_Length_3860_hit1_IdMatch=24.94,AligLength=1199,E-val=1e-81\n+GGTTACTCACGACTATGCCACCATTGGTGACAGAATTCGCTGGAGTAGACTGTTGTGGTA\n+TAGCTCTCAGCGCTACGGTTATAGTACCTCAGAGTATTTTGAAGCCACCACCTTTCAACG\n+AGAAAGACTGGCCTTTGAATGAAGACGAGAGTATGTTCAGTGCCTCGCGCAAGTATAATT\n+ACATGATAAATACTAGTACGTTGAGCCTTTATGGTTCGAGGGAAAGTTTAGTCGGTAAAG\n+CAATATACGGTTTATATACTGATGAGCAATCACAGTCACGCTTCAGGACAGTATGGCATC\n+AAATAATGGCAAGTGTCTACGCACTAGACGATTATCTAGGTCATACTAACCATCCAGTTC\n+GTGCAGTGTTGGCACAGTTAAACTTAGACAAAGGATTACCATTCAAGGAAACTGCTGAAG\n+GTATTGACTTAACAGAGGCGGTTGAAAAAGGAATTGATTCGAGTACATTACTACCATCAA\n+TATTATATATGTTGATCTCAGTATCGTGCGATATCTGTTTCGGAATTTCAACTGAAGTTG\n+AAGGTGCCTTTACGATCAATCATTATCTTAATCTAGCACAGCATGATTACGCGGATGAGA\n+AGTTACGAATTAAGTCGGCATGTCGTAATTGGTTTGCACAAGCATTGAGTAAACTAGACG\n+TCATAGCTTACCCAGTTTATAACAATCAGCTCGAGATCATCGACCTAAAGTATGTACATG\n+GTAAAGAGCCAAAGTATGTAAGCACATTACATGAAAAAGTTGCCGAATCACGTCAACGTA\n+AGCTGTCAAAATACCCATACTTACTGGAATATATTGATAGGTCACGTAAAGCGAAAACGG\n+TGGAGGAATTAATCCATAGACTTTTAGTGATGAATGCACTTTCAAACGACCGCTCTTTCT\n+ATAAAACACGGACGGAATTATCATTAGACGCGGCGGTAAAATCAGAGGTGCGAGAGCACT\n+TAGTTAGTGCTCCGGTCGCTAAATTGATTGACCCTCAGTCTAATCGAATCTATCAGAAGT\n+ACTTTATTAGAGAAAGGAATGAAGCAATGTACTATGCTCAACAGTACTTATTAAGCTTTG\n+TCCCAGCATTGATCCAACAACTGAGCAAAACCAACTTTGATGAGGAATGGTTACGATTTT\n+TAACCACATCTTCACCTGGAGTCAAATTACCTCAAGAAACGCTAGACAGCCTGAGTAAAA\n+CATCTGCAGTATTATCGAAATCAAGACGAGGTTTGGAAGCGCTTGAAGCATCTGAATATA\n+GAAGCATCAATCGTGTTGAACGAGCGTTAGAGATGGTACTCAAATTAGTTCAAAGACAAC\n+AAAATGATAGAAGACAACGAGCGATAGCAGGCGAACCAAATTCCATTCTATTACTGACCC\n+TTGTTTATTATGTTATCTTATCGGCTATGTACGCCATGTCGACAGATGCAGCTCAAGGTA\n+AACAGGTTGGTAATTCAATGGACCTTCAAGACTTGTTATTCGCGACAACTCAGACGGACA\n+CGCTTGTGTCATCAATTGATATTGTAGGTATGGATGCTTCTGTGCAGTCAATAACTACTG\n+AGTTGTCAAATATTATCTGTCTTGAAGTGACGCGTGGTTTACCTGAATCACAAATTGGAC\n+CATTTACAGGCGGTATGAAGCGTCTTCTGCAACTAAGTGATGAACCTGGTGGAGCGTGGA\n+AGCAGGTTGAGATGTATGTATCAGGTACACTTGAGGCCGTGGTATTCGAAGGTAGTCATG\n+CACTAACATCAACTACTTACGAGAGTAAGATTTTTGGAAGTGTTAAGAACTATGCGGGTA\n+CGTATCCCTCAGGTAGAGCTGACACGTCGTCACATCACACTAAGGTTTTGGAAGGTGCGA\n+CCCGTGGTAATGAAATGCGAAGAAGAACGGATGAGCGAATCGTGCACCATGCGTCGACGA\n+TTGTAATGTCACGTAATATGGGTGATGATAAGTCAGACGTATACACAGGATCATTTCCAA\n+ATGTTATATCACAATTAGTGAGCGATAAAGATGTACTCGCACAATTGGGTTTTAAGACAG\n+ATGCAGATCTCTCGAGTCACAACGGAGAATTCTTGCAACAACATGTATGTAGAGGAAGGC\n+TAGTCGGAAAACCATCACGTATATCAATAGGCACAGTAGAGCATCGTAAAGAGAAGGTTC\n+GGATGCATGAAGCATGTCAAGAACTTCTATCTATTATGGATGACCTAATTGTGCGTATTA\n+GAGATACCGAGGGCTTGAAGATGATGATCTTCTCGTTTGCTATACATTGCATTAATAGTA\n+TTGTATTAAACATTGCGAAAGTTGATCTTGCCGCTATAATATCGAAATTGACTTCAAATA\n+ATTTGCGTACATATGTATATCCTACGAAAGATGAACATGCTTTTCAGCTCGTTAGATTGT\n+ATTTTCCATTGATGTGGTTCTTTATGCATAAAGGTGGTGAATTACCAGCTTATCCAATTG\n+AACGGGTTGATGGTACTTATACAGATGACGAGTCGGTGTACACTGTGCGAGGTGAATACA\n+AACGAAGATTGATGTTTGATATTATAGGTATTGATAAAATTGAGAAATTTGGTGACGCCA\n+TTTTCAGAAATAATCACTGCTTTGATATCGGTTTGAACGCTGCTGATGCCATCATTAAGC\n+TGAAGATAACGGATCTACCGAAGGAAATGAGAAGTGAAACGCTCGAGCATGGTATCATAT\n+CAAATCTAGCGAAAAATTTAGAGTCATTCGGCAATGCTATGTCTAAGGAAGCTTCACTTC\n+AAGCGAAACTCAGGATTGAAAATGAACTTGCAGGTGTTAGGAGCGTAACTCAGACAAATG\n+AAGTTGTCGTTGGAAGAGGAAAGATAGCAAAAGTCCCAAAAAGTATTGTATACGCACATC\n+GAACTGAAGCACAACTTGAACAGATATTAATGACAAGAGAGTCGGATAATGAAGAGCGAC\n+CAATGATATCAAAGCGAATGCTTGATCACATCGCTTCACTATCGTTTCATCATGTTGTTA\n+ATGTCAAGACAACGGATAAGTTACACTTGTATTACTTCTATCCTAGTGGCGATGCCCTAG\n+TTTACGGTAATCATGCAAAATACACTGAACATTTCGAATTAGCTCCACCTATGTGGTATT\n+TGTCACCTTCATGGCGTTTATATGGCCTATTAGGTACAGCGTCACAGACACGTGGTGACT\n+TACTTCGACAAATTAATTGGCTAAAAGGTAAATATGGAACGTTTAAGCTTGATGACGAGA\n+AGATCCGTTATGGATATGATGTTATCTGGCGAAAGAACAGACATCTGCTTAATGACTACA\n+TGACAATGATCGGAGCATCACCACATCTTGAAAACTTGCTTAAGAGCATCTTTCGTTTGA\n+TGGATAGATGGGGTACTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTA\n+TCTCAGACAAT\n' |
| b |
| diff -r e3aee4ba49c6 -r ea8fde9c6f82 test-data/output_termlist_without.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output_termlist_without.fa Wed Oct 09 18:48:17 2019 -0400 |
| b |
| b'@@ -0,0 +1,5187 @@\n+>gi|157065140|gb|ABV04399.1|_p3__Heliothis_armigera_cypovirus_5--Locus_27_Transcript_6/7_Confidence_0.333_Length_1626_hit1_IdMatch=24.9,AligLength=494,E-val=2e-33\n+CTCCTCGCTCATGTCAAGAACTTCTATCTATTATGGATGACCTAATTGTGCGTATTAGAG\n+ATACCGAGGGCTTGAAGATGATGATCTTCTCGTTTGCTATACATTGCATTAATAGTATTG\n+TATTAAACATTGCGAAAGTTGATCTTGCCGCTATAATATCGAAATTGACTTCAAATAATT\n+TGCGTACATATGTATATCCTACGAAAGATGAACATGCTTTTCAGCTCGTTAGATTGTATT\n+TTCCATTGATGTGGTTCTTTATGCATAAAGGTGGTGAATTACCAGCTTATCCAATTGAAC\n+GGGTTGATGGTACTTATACAGATGACGAGTCGGTGTACACTGTGCGAGGTGAATACAAAC\n+GAAGATTGATGTTTGATATTATAGGTATTGATAAAATTGAGAAATTTGGTGACGCCATTT\n+TCAGAAATAATCACTGCTTTGATATCGGTTTGAACGCTGCTGATGCCATCATTAAGCTGA\n+AGATAACGGATCTACCGAAGGAAATGAGAAGTGAAACGCTCGAGCATGGTATCATATCAA\n+ATCTAGCGAAAAATTTAGAGTCATTCGGCAATGCTATGTCTAAGGAAGCTTCACTTCAAG\n+CGAAACTCAGGATTGAAAATGAACTTGCAGGTGTTAGGAGCGTAACTCAGACAAATGAAG\n+TTGTCGTTGGAAGAGGAAAGATAGCAAAAGTCCCAAAAAGTATTGTATACGCACATCGAA\n+CTGAAGCACAACTTGAACAGATATTAATGACAAGAGAGTCGGATAATGAAGAGCGACCAA\n+TGATATCAAAGCGAATGCTTGATCACATCGCTTCACTATCGTTTCATCATGTTGTTAATG\n+TCAAGACAACGGATAAGTTACACTTGTATTACTTCTATCCTAGTGGCGATGCCCTAGTTT\n+ACGGTAATCATGCAAAATACACTGAACATTTCGAATTAGCTCCACCTATGTGGTATTTGT\n+CACCTTCATGGCGTTTATATGGCCTATTAGGTACAGCGTCACAGACACGTGGTGACTTAC\n+TTCGACAAATTAATTGGCTAAAAGGTAAATATGGAACGTTTAAGCTTGATGACGAGAAGA\n+TCCGTTATGGATATGATGTTATCTGGCGAAAGAACAGACATCTGCTTAATGACTACATGA\n+CAATGATCGGAGCATCACCACATCTTGAAAACTTGCTTAAGAGCATCTTTCGTTTGATGG\n+ATAGATGGGGTACTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTATCT\n+CAGACAATCCATTAGTCGCTGAACAGAACATTATCTTCGCTGCAGATGGTGACGAGATAA\n+CTAGGCCCTTACAGGTAATTGTCGGCTATCTACATATACTTGCGCATATTAATACGATTT\n+TTACACGACCACAAGTAAAGTTAACTGAGCATCTTATTGAATATATGCATCAGCGAGCTG\n+TACATACAGGAAGGTCG\n+>gi|584614105|gb|AHJ14783.1|_VP3__Orgyia_pseudotsugata_cypovirus_5--Locus_27_Transcript_1/7_Confidence_0.444_Length_3872_hit1_IdMatch=28.76,AligLength=1217,E-val=4e-139\n+GTGGTATAGCTCTCAGCGCTACGGTTATAGTACCTCAGAGTATTTTGAAGCCACCACCTT\n+TCAACGAGAAAGACTGGCCTTTGAATGAAGACGAGAGTATGTTCAGTGCCTCGCGCAAGT\n+ATAATTACATGATAAATACTAGTACGTTGAGCCTTTATGGTTCGAGGGAAAGTTTAGTCG\n+GTAAAGCAATATACGGTTTATATACTGATGAGCAATCACAGTCACGCTTCAGGACAGTAT\n+GGCATCAAATAATGGCAAGTGTCTACGCACTAGACGATTATCTAGGTCATACTAACCATC\n+CAGTTCGTGCAGTGTTGGCACAGTTAAACTTAGACAAAGGATTACCATTCAAGGAAACTG\n+CTGAAGGTATTGACTTAACAGAGGCGGTTGAAAAAGGAATTGATTCGAGTACATTACTAC\n+CATCAATATTATATATGTTGATCTCAGTATCGTGCGATATCTGTTTCGGAATTTCAACTG\n+AAGTTGAAGGTGCCTTTACGATCAATCATTATCTTAATCTAGCACAGCATGATTACGCGG\n+ATGAGAAGTTACGAATTAAGTCGGCATGTCGTAATTGGTTTGCACAAGCATTGAGTAAAC\n+TAGACGTCATAGCTTACCCAGTTTATAACAATCAGCTCGAGATCATCGACCTAAAGTATG\n+TACATGGTAAAGAGCCAAAGTATGTAAGCACATTACATGAAAAAGTTGCCGAATCACGTC\n+AACGTAAGCTGTCAAAATACCCATACTTACTGGAATATATTGATAGGTCACGTAAAGCGA\n+AAACGGTGGAGGAATTAATCCATAGACTTTTAGTGATGAATGCACTTTCAAACGACCGCT\n+CTTTCTATAAAACACGGACGGAATTATCATTAGACGCGGCGGTAAAATCAGAGGTGCGAG\n+AGCACTTAGTTAGTGCTCCGGTCGCTAAATTGATTGACCCTCAGTCTAATCGAATCTATC\n+AGAAGTACTTTATTAGAGAAAGGAATGAAGCAATGTACTATGCTCAACAGTACTTATTAA\n+GCTTTGTCCCAGCATTGATCCAACAACTGAGCAAAACCAACTTTGATGAGGAATGGTTAC\n+GATTTTTAACCACATCTTCACCTGGAGTCAAATTACCTCAAGAAACGCTAGACAGCCTGA\n+GTAAAACATCTGCAGTATTATCGAAATCAAGACGAGGTTTGGAAGCGCTTGAAGCATCTG\n+AATATAGAAGCATCAATCGTGTTGAACGAGCGTTAGAGATGGTACTCAAATTAGTTCAAA\n+GACAACAAAATGATAGAAGACAACGAGCGATAGCAGGCGAACCAAATTCCATTCTATTAC\n+TGACCCTTGTTTATTATGTTATCTTATCGGCTATGTACGCCATGTCGACAGATGCAGCTC\n+AAGGTAAACAGGTTGGTAATTCAATGGACCTTCAAGACTTGTTATTCGCGACAACTCAGA\n+CGGACACGCTTGTGTCATCAATTGATATTGTAGGTATGGATGCTTCTGTGCAGTCAATAA\n+CTACTGAGTTGTCAAATATTATCTGTCTTGAAGTGACGCGTGGTTTACCTGAATCACAAA\n+TTGGACCATTTACAGGCGGTATGAAGCGTCTTCTGCAACTAAGTGATGAACCTGGTGGAG\n+CGTGGAAGCAGGTTGAGATGTATGTATCAGGTACACTTGAGGCCGTGGTATTCGAAGGTA\n+GTCATGCACTAACATCAACTACTTACGAGAGTAAGATTTTTGGAAGTGTTAAGAACTATG\n+CGGGTACGTATCCCTCAGGTAGAGCTGACACGTCGTCACATCACACTAAGGTTTTGGAAG\n+GTGCGACCCGTGGTAATGAAATGCGAAGAAGAACGGATGAGCGAATCGTGCACCATGCGT\n+CGACGATTGTAATGTCACGTAATATGGGTGATGATAAGTCAGACGTATACACAGGATCAT\n+TTCCAAATGTTATATCACAATTAGTGAGCGATAAAGATGTACTCGCACAATTGGGTTTTA\n+AGACAGATGCAGATCTCTCGAGTCACAACGGAGAATTCTTGCAACAACATGTATGTAGAG\n+GAAGGCTAGTCGGAAAACCATCACGTATAT'..b'TTTCGTTTGATGGATAGATGGG\n+GTACTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTATCTCAGACAATC\n+CATTAGTCGCTGAACAGAACATTATCTTCGCTGCAGATGGTGACGAGATAACTAGGCCCT\n+TACAGGTAATTGTCGGCTATCTACATATACTTGCGCATATTAATACGATTTTTACACGAC\n+CACAAGTAAAGTTAACTGAGCATCTTATTGAATATATGCATCAGCGAGCTGTACAT\n+>gi|330688232|gb|AEC32894.1|_RNA-dependent_RNA_polymerase__Rice_ragged_stunt_virus--Locus_27_Transcript_2/7_Confidence_0.333_Length_3860_hit1_IdMatch=24.94,AligLength=1199,E-val=1e-81\n+GGTTACTCACGACTATGCCACCATTGGTGACAGAATTCGCTGGAGTAGACTGTTGTGGTA\n+TAGCTCTCAGCGCTACGGTTATAGTACCTCAGAGTATTTTGAAGCCACCACCTTTCAACG\n+AGAAAGACTGGCCTTTGAATGAAGACGAGAGTATGTTCAGTGCCTCGCGCAAGTATAATT\n+ACATGATAAATACTAGTACGTTGAGCCTTTATGGTTCGAGGGAAAGTTTAGTCGGTAAAG\n+CAATATACGGTTTATATACTGATGAGCAATCACAGTCACGCTTCAGGACAGTATGGCATC\n+AAATAATGGCAAGTGTCTACGCACTAGACGATTATCTAGGTCATACTAACCATCCAGTTC\n+GTGCAGTGTTGGCACAGTTAAACTTAGACAAAGGATTACCATTCAAGGAAACTGCTGAAG\n+GTATTGACTTAACAGAGGCGGTTGAAAAAGGAATTGATTCGAGTACATTACTACCATCAA\n+TATTATATATGTTGATCTCAGTATCGTGCGATATCTGTTTCGGAATTTCAACTGAAGTTG\n+AAGGTGCCTTTACGATCAATCATTATCTTAATCTAGCACAGCATGATTACGCGGATGAGA\n+AGTTACGAATTAAGTCGGCATGTCGTAATTGGTTTGCACAAGCATTGAGTAAACTAGACG\n+TCATAGCTTACCCAGTTTATAACAATCAGCTCGAGATCATCGACCTAAAGTATGTACATG\n+GTAAAGAGCCAAAGTATGTAAGCACATTACATGAAAAAGTTGCCGAATCACGTCAACGTA\n+AGCTGTCAAAATACCCATACTTACTGGAATATATTGATAGGTCACGTAAAGCGAAAACGG\n+TGGAGGAATTAATCCATAGACTTTTAGTGATGAATGCACTTTCAAACGACCGCTCTTTCT\n+ATAAAACACGGACGGAATTATCATTAGACGCGGCGGTAAAATCAGAGGTGCGAGAGCACT\n+TAGTTAGTGCTCCGGTCGCTAAATTGATTGACCCTCAGTCTAATCGAATCTATCAGAAGT\n+ACTTTATTAGAGAAAGGAATGAAGCAATGTACTATGCTCAACAGTACTTATTAAGCTTTG\n+TCCCAGCATTGATCCAACAACTGAGCAAAACCAACTTTGATGAGGAATGGTTACGATTTT\n+TAACCACATCTTCACCTGGAGTCAAATTACCTCAAGAAACGCTAGACAGCCTGAGTAAAA\n+CATCTGCAGTATTATCGAAATCAAGACGAGGTTTGGAAGCGCTTGAAGCATCTGAATATA\n+GAAGCATCAATCGTGTTGAACGAGCGTTAGAGATGGTACTCAAATTAGTTCAAAGACAAC\n+AAAATGATAGAAGACAACGAGCGATAGCAGGCGAACCAAATTCCATTCTATTACTGACCC\n+TTGTTTATTATGTTATCTTATCGGCTATGTACGCCATGTCGACAGATGCAGCTCAAGGTA\n+AACAGGTTGGTAATTCAATGGACCTTCAAGACTTGTTATTCGCGACAACTCAGACGGACA\n+CGCTTGTGTCATCAATTGATATTGTAGGTATGGATGCTTCTGTGCAGTCAATAACTACTG\n+AGTTGTCAAATATTATCTGTCTTGAAGTGACGCGTGGTTTACCTGAATCACAAATTGGAC\n+CATTTACAGGCGGTATGAAGCGTCTTCTGCAACTAAGTGATGAACCTGGTGGAGCGTGGA\n+AGCAGGTTGAGATGTATGTATCAGGTACACTTGAGGCCGTGGTATTCGAAGGTAGTCATG\n+CACTAACATCAACTACTTACGAGAGTAAGATTTTTGGAAGTGTTAAGAACTATGCGGGTA\n+CGTATCCCTCAGGTAGAGCTGACACGTCGTCACATCACACTAAGGTTTTGGAAGGTGCGA\n+CCCGTGGTAATGAAATGCGAAGAAGAACGGATGAGCGAATCGTGCACCATGCGTCGACGA\n+TTGTAATGTCACGTAATATGGGTGATGATAAGTCAGACGTATACACAGGATCATTTCCAA\n+ATGTTATATCACAATTAGTGAGCGATAAAGATGTACTCGCACAATTGGGTTTTAAGACAG\n+ATGCAGATCTCTCGAGTCACAACGGAGAATTCTTGCAACAACATGTATGTAGAGGAAGGC\n+TAGTCGGAAAACCATCACGTATATCAATAGGCACAGTAGAGCATCGTAAAGAGAAGGTTC\n+GGATGCATGAAGCATGTCAAGAACTTCTATCTATTATGGATGACCTAATTGTGCGTATTA\n+GAGATACCGAGGGCTTGAAGATGATGATCTTCTCGTTTGCTATACATTGCATTAATAGTA\n+TTGTATTAAACATTGCGAAAGTTGATCTTGCCGCTATAATATCGAAATTGACTTCAAATA\n+ATTTGCGTACATATGTATATCCTACGAAAGATGAACATGCTTTTCAGCTCGTTAGATTGT\n+ATTTTCCATTGATGTGGTTCTTTATGCATAAAGGTGGTGAATTACCAGCTTATCCAATTG\n+AACGGGTTGATGGTACTTATACAGATGACGAGTCGGTGTACACTGTGCGAGGTGAATACA\n+AACGAAGATTGATGTTTGATATTATAGGTATTGATAAAATTGAGAAATTTGGTGACGCCA\n+TTTTCAGAAATAATCACTGCTTTGATATCGGTTTGAACGCTGCTGATGCCATCATTAAGC\n+TGAAGATAACGGATCTACCGAAGGAAATGAGAAGTGAAACGCTCGAGCATGGTATCATAT\n+CAAATCTAGCGAAAAATTTAGAGTCATTCGGCAATGCTATGTCTAAGGAAGCTTCACTTC\n+AAGCGAAACTCAGGATTGAAAATGAACTTGCAGGTGTTAGGAGCGTAACTCAGACAAATG\n+AAGTTGTCGTTGGAAGAGGAAAGATAGCAAAAGTCCCAAAAAGTATTGTATACGCACATC\n+GAACTGAAGCACAACTTGAACAGATATTAATGACAAGAGAGTCGGATAATGAAGAGCGAC\n+CAATGATATCAAAGCGAATGCTTGATCACATCGCTTCACTATCGTTTCATCATGTTGTTA\n+ATGTCAAGACAACGGATAAGTTACACTTGTATTACTTCTATCCTAGTGGCGATGCCCTAG\n+TTTACGGTAATCATGCAAAATACACTGAACATTTCGAATTAGCTCCACCTATGTGGTATT\n+TGTCACCTTCATGGCGTTTATATGGCCTATTAGGTACAGCGTCACAGACACGTGGTGACT\n+TACTTCGACAAATTAATTGGCTAAAAGGTAAATATGGAACGTTTAAGCTTGATGACGAGA\n+AGATCCGTTATGGATATGATGTTATCTGGCGAAAGAACAGACATCTGCTTAATGACTACA\n+TGACAATGATCGGAGCATCACCACATCTTGAAAACTTGCTTAAGAGCATCTTTCGTTTGA\n+TGGATAGATGGGGTACTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTA\n+TCTCAGACAAT\n' |
| b |
| diff -r e3aee4ba49c6 -r ea8fde9c6f82 test-data/output_without.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output_without.fa Wed Oct 09 18:48:17 2019 -0400 |
| b |
| b'@@ -0,0 +1,2310 @@\n+>gi|157065140|gb|ABV04399.1|_p3__Heliothis_armigera_cypovirus_5--Locus_27_Transcript_6/7_Confidence_0.333_Length_1626_hit1_IdMatch=24.9,AligLength=494,E-val=2e-33\n+CTCCTCGCTCATGTCAAGAACTTCTATCTATTATGGATGACCTAATTGTGCGTATTAGAG\n+ATACCGAGGGCTTGAAGATGATGATCTTCTCGTTTGCTATACATTGCATTAATAGTATTG\n+TATTAAACATTGCGAAAGTTGATCTTGCCGCTATAATATCGAAATTGACTTCAAATAATT\n+TGCGTACATATGTATATCCTACGAAAGATGAACATGCTTTTCAGCTCGTTAGATTGTATT\n+TTCCATTGATGTGGTTCTTTATGCATAAAGGTGGTGAATTACCAGCTTATCCAATTGAAC\n+GGGTTGATGGTACTTATACAGATGACGAGTCGGTGTACACTGTGCGAGGTGAATACAAAC\n+GAAGATTGATGTTTGATATTATAGGTATTGATAAAATTGAGAAATTTGGTGACGCCATTT\n+TCAGAAATAATCACTGCTTTGATATCGGTTTGAACGCTGCTGATGCCATCATTAAGCTGA\n+AGATAACGGATCTACCGAAGGAAATGAGAAGTGAAACGCTCGAGCATGGTATCATATCAA\n+ATCTAGCGAAAAATTTAGAGTCATTCGGCAATGCTATGTCTAAGGAAGCTTCACTTCAAG\n+CGAAACTCAGGATTGAAAATGAACTTGCAGGTGTTAGGAGCGTAACTCAGACAAATGAAG\n+TTGTCGTTGGAAGAGGAAAGATAGCAAAAGTCCCAAAAAGTATTGTATACGCACATCGAA\n+CTGAAGCACAACTTGAACAGATATTAATGACAAGAGAGTCGGATAATGAAGAGCGACCAA\n+TGATATCAAAGCGAATGCTTGATCACATCGCTTCACTATCGTTTCATCATGTTGTTAATG\n+TCAAGACAACGGATAAGTTACACTTGTATTACTTCTATCCTAGTGGCGATGCCCTAGTTT\n+ACGGTAATCATGCAAAATACACTGAACATTTCGAATTAGCTCCACCTATGTGGTATTTGT\n+CACCTTCATGGCGTTTATATGGCCTATTAGGTACAGCGTCACAGACACGTGGTGACTTAC\n+TTCGACAAATTAATTGGCTAAAAGGTAAATATGGAACGTTTAAGCTTGATGACGAGAAGA\n+TCCGTTATGGATATGATGTTATCTGGCGAAAGAACAGACATCTGCTTAATGACTACATGA\n+CAATGATCGGAGCATCACCACATCTTGAAAACTTGCTTAAGAGCATCTTTCGTTTGATGG\n+ATAGATGGGGTACTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTATCT\n+CAGACAATCCATTAGTCGCTGAACAGAACATTATCTTCGCTGCAGATGGTGACGAGATAA\n+CTAGGCCCTTACAGGTAATTGTCGGCTATCTACATATACTTGCGCATATTAATACGATTT\n+TTACACGACCACAAGTAAAGTTAACTGAGCATCTTATTGAATATATGCATCAGCGAGCTG\n+TACATACAGGAAGGTCG\n+>gi|584614105|gb|AHJ14783.1|_VP3__Orgyia_pseudotsugata_cypovirus_5--Locus_27_Transcript_1/7_Confidence_0.444_Length_3872_hit1_IdMatch=28.76,AligLength=1217,E-val=4e-139\n+GTGGTATAGCTCTCAGCGCTACGGTTATAGTACCTCAGAGTATTTTGAAGCCACCACCTT\n+TCAACGAGAAAGACTGGCCTTTGAATGAAGACGAGAGTATGTTCAGTGCCTCGCGCAAGT\n+ATAATTACATGATAAATACTAGTACGTTGAGCCTTTATGGTTCGAGGGAAAGTTTAGTCG\n+GTAAAGCAATATACGGTTTATATACTGATGAGCAATCACAGTCACGCTTCAGGACAGTAT\n+GGCATCAAATAATGGCAAGTGTCTACGCACTAGACGATTATCTAGGTCATACTAACCATC\n+CAGTTCGTGCAGTGTTGGCACAGTTAAACTTAGACAAAGGATTACCATTCAAGGAAACTG\n+CTGAAGGTATTGACTTAACAGAGGCGGTTGAAAAAGGAATTGATTCGAGTACATTACTAC\n+CATCAATATTATATATGTTGATCTCAGTATCGTGCGATATCTGTTTCGGAATTTCAACTG\n+AAGTTGAAGGTGCCTTTACGATCAATCATTATCTTAATCTAGCACAGCATGATTACGCGG\n+ATGAGAAGTTACGAATTAAGTCGGCATGTCGTAATTGGTTTGCACAAGCATTGAGTAAAC\n+TAGACGTCATAGCTTACCCAGTTTATAACAATCAGCTCGAGATCATCGACCTAAAGTATG\n+TACATGGTAAAGAGCCAAAGTATGTAAGCACATTACATGAAAAAGTTGCCGAATCACGTC\n+AACGTAAGCTGTCAAAATACCCATACTTACTGGAATATATTGATAGGTCACGTAAAGCGA\n+AAACGGTGGAGGAATTAATCCATAGACTTTTAGTGATGAATGCACTTTCAAACGACCGCT\n+CTTTCTATAAAACACGGACGGAATTATCATTAGACGCGGCGGTAAAATCAGAGGTGCGAG\n+AGCACTTAGTTAGTGCTCCGGTCGCTAAATTGATTGACCCTCAGTCTAATCGAATCTATC\n+AGAAGTACTTTATTAGAGAAAGGAATGAAGCAATGTACTATGCTCAACAGTACTTATTAA\n+GCTTTGTCCCAGCATTGATCCAACAACTGAGCAAAACCAACTTTGATGAGGAATGGTTAC\n+GATTTTTAACCACATCTTCACCTGGAGTCAAATTACCTCAAGAAACGCTAGACAGCCTGA\n+GTAAAACATCTGCAGTATTATCGAAATCAAGACGAGGTTTGGAAGCGCTTGAAGCATCTG\n+AATATAGAAGCATCAATCGTGTTGAACGAGCGTTAGAGATGGTACTCAAATTAGTTCAAA\n+GACAACAAAATGATAGAAGACAACGAGCGATAGCAGGCGAACCAAATTCCATTCTATTAC\n+TGACCCTTGTTTATTATGTTATCTTATCGGCTATGTACGCCATGTCGACAGATGCAGCTC\n+AAGGTAAACAGGTTGGTAATTCAATGGACCTTCAAGACTTGTTATTCGCGACAACTCAGA\n+CGGACACGCTTGTGTCATCAATTGATATTGTAGGTATGGATGCTTCTGTGCAGTCAATAA\n+CTACTGAGTTGTCAAATATTATCTGTCTTGAAGTGACGCGTGGTTTACCTGAATCACAAA\n+TTGGACCATTTACAGGCGGTATGAAGCGTCTTCTGCAACTAAGTGATGAACCTGGTGGAG\n+CGTGGAAGCAGGTTGAGATGTATGTATCAGGTACACTTGAGGCCGTGGTATTCGAAGGTA\n+GTCATGCACTAACATCAACTACTTACGAGAGTAAGATTTTTGGAAGTGTTAAGAACTATG\n+CGGGTACGTATCCCTCAGGTAGAGCTGACACGTCGTCACATCACACTAAGGTTTTGGAAG\n+GTGCGACCCGTGGTAATGAAATGCGAAGAAGAACGGATGAGCGAATCGTGCACCATGCGT\n+CGACGATTGTAATGTCACGTAATATGGGTGATGATAAGTCAGACGTATACACAGGATCAT\n+TTCCAAATGTTATATCACAATTAGTGAGCGATAAAGATGTACTCGCACAATTGGGTTTTA\n+AGACAGATGCAGATCTCTCGAGTCACAACGGAGAATTCTTGCAACAACATGTATGTAGAG\n+GAAGGCTAGTCGGAAAACCATCACGTATAT'..b'CCAAAAAGTATTGTATACGCACATCGAA\n+CTGAAGCACAACTTGAACAGATATTAATGACAAGAGAGTCGGATAATGAAGAGCGACCAA\n+TGATATCAAAGCGAATGCTTGATCACATCGCTTCACTATCGTTTCATCATGTTGTTAATG\n+TCAAGACAACGGATAAGTTACACTTGTATTACTTCTATCCTAGTGGCGATGCCCTAGTTT\n+ACGGTAATCATGCAAAATACACTGAACATTTCGAATTAGCTCCACCTATGTGGTATTTGT\n+CACCTTCATGGCGTTTATATGGCCTATTAGGTACAGCGTCACAGACACGTGGTGACTTAC\n+TTCGACAAATTAATTGGCTAAAAGGTAAATATGGAACGTTTAAGCTTGATGACGAGAAGA\n+TCCGTTATGGATATGATGTTATCTGGCGAAAGAACAGACATCTGCTTAATGACTACATGA\n+CAATGATCGGAGCATCACCACATCTTGAAAACTTGCTTAAGAGCATCTTTCGTTTGATGG\n+ATAGATGGGGTACTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTATCT\n+CAGACAATCCATTAGTCGCTGAACAGAACATTATCTTCGCTGCAGATGGTGACGAGATAA\n+CTAGGCCCTTACAGGTAATTGTCGGCTATCTACATATACTTGCGCATATTAATACGATTT\n+TTACACGACCACAAGTAAAGTTAACTGAGCATCTTATTGAATATATGCATCAGCGAGCTG\n+TACATACAGGAAGGTCG\n+>gi|798547250|gb|AKA63263.1|_nonstructural_polyprotein__Cricket_paralysis_virus--Locus_63_Transcript_2/2_Confidence_0.333_Length_343_hit1_IdMatch=53.45,AligLength=116,E-val=4e-32\n+ACACAGTCCACAGTCCGAAGACCAAAGCGTTGGATAGGACACGAATACACAGATGAAACG\n+AAAACAGGCGAGGCTGCGCCCTATCGGACATTGGAAGAAGTCCGTTTCCTTAAAAGAGGG\n+TTCAGAATGGATCACCTCTTGTGTCGGTGGGTAGCTCCTTTGAAGAAGGATGTCATCTAC\n+GAAATGCTTAATTGGACGCGCAAAGGGATTAACCCAGATGATGTGACGATGATGATCATT\n+GATACAGCATTTAGGGAGATCTCTTATCACGGAAGGGAAGCTTTCGAGAAGCTGCGAGGG\n+CAGATACTTGAGCAGCGGGATGTGTTGGTTGAATATCCTCAA\n+>gi|798547250|gb|AKA63263.1|_nonstructural_polyprotein__Cricket_paralysis_virus--Locus_63_Transcript_1/2_Confidence_0.333_Length_1607_hit1_IdMatch=54.29,AligLength=536,E-val=0.0\n+CTAGAATCACAGCTCAGATGAGTTTTGAGGCACCGAAGGACGCAATTGAAGGACCGTGTC\n+AAACCCCGGAAGGATTGTTCGCCCCTATTGGCAAAGCGCCGATAGGCGTAGGGATGTCCA\n+CCAAGACGGCTATACGACCTTCACGCTTGTATGGAAGAATAACTAAACCGACAACTGCAC\n+CATCATACTTGGGTAAAGACGCGCTTTATCGTGGATTGACCAAGTGTGGTGTTCGCACAG\n+TTAATATTCAACCAGAATACATAGACGCAGCGGCGAATGACGTCGCACGCTATGTGTTAA\n+ACCAGCATGTTGGTCACGTGGATAGGGAACGATACACACGTATATTGTCGTACGAGGAGG\n+CTGTTAAGGGCGTGCCGTACGATGATTTCATGAAGTCAGTGACTCGAGTCACTTCCCCTG\n+GTTACCCCTATTGCTTGGATACTGGAAACATGCCAGGGAAAAGCAAATGGATGGGGCTCG\n+AACAAGATTTCGATATGACAAGTCCAGCTGCTTTGGCTTTGAGGAAAGATGTTGAAAGTT\n+TGTTGGAAGATTGCAAAAATGGCTTAGTCCGTGATGTGGTGTTTGTCGACACTCTCAAGG\n+ATGAAAGGCGCGAGCTGATAAAGGTGGAAGCAAAGAAGACTCGAGTCTTTTCTGCTGGAC\n+CACAGCATTTTGTAATAGCTTTCCGGCAATACTTTCTTCCATTCTCTGCCTGGGTCATGC\n+ATAACAGAATCGAAAACGAAGTAGCCGTTGGAACAAACCCCTTCTCAATGGATTGGCACA\n+ACATTGCTGTGCGTATGCGTAGTAAAGGGAGACACATTATTGCTGGAGATTTTAGCAATT\n+TTGATGGATCCCTCAACGCCCAAGTTCTCTGGACAATATTTTGGAAGATATTTGTCCCGT\n+GGCTTAATGATATTGAACCACTTGGTACACCCAAGAATGAGGAGAATCTGCGGGTCTGCA\n+CGAGTCTATGGACGCACTTGGTGCACTCCGTGCACATTTGTGGAGATAACTTGTACATGT\n+GGACACATTCTCAACCATCGGGCAATCCCTTCACGGTGATAATCAATAGTTTGTATAACT\n+CAGTTATCATGCGTGTCGTGTGGCAATACATAATGGCGAAAGAAGAACCTAAGTTACGCA\n+CAATGAACCATTTCAATCAACATGTTGCTATGGTTTCATATGGTGATGACAATCTACTTA\n+ACATCTCGGAAGGGGTAATTGATATCTTCAACCAACTTACCATCTCGGAAGCCATGCGTT\n+GGATAGGACACGAATACACAGATGAAACGAAAACAGGCGAGGCTGCGCCCTATCGGACAT\n+TGGAAGAAGTCCGTTTCCTTAAAAGAGGGTTCAGAATGGATCACCTCTTGTGTCGGTGGG\n+TAGCTCCTTTGAAGAAGGATGTCATCTACGAAATGCTTAATTGGACGCGCAAAGGGATTA\n+ACCCAGATGATGTGACGATGATGATCATTGATACAGCATTTAGGGAGATCTCTTATCACG\n+GAAGGGAAGCTTTCGAGAAGCTGCGAGGGCAGATACTTGAGCAGCGGGATGTGTTGGTTG\n+AATATCCTCAA\n+>gi|2388673|gb|AAC58807.1|_replicase_polyprotein__Drosophila_C_virus--Locus_50_Transcript_1/1_Confidence_0.000_Length_1442_hit1_IdMatch=35.5,AligLength=231,E-val=2e-37\n+AACACGTATCGAATGTGTATCAAGAGGGATCCTGATGATTTGGTCGTTGGAAACGCTGTG\n+TTTATCACAGGGTGGACGCTCCTCATACCGTACCACTTCGTTTGTGGACTGGCGGGACGG\n+AGAATAGCTGCTGATTCCATCGTGACTTTGTCAAAGCCAGGCTTGGATAAGATTATTGAA\n+TTCCCGTTGTCACGAATCTTCCGATACGATACCTCACCAGATGGTTTTACCACTAGTGAG\n+TATTGTGCTCGAATGGAACATGAAGATGGAGAATTGGTTGATGCCATCCTGGTAAACCTG\n+CATGGTTTGGGAGTGCGAATCCATCCTGACCTCCGGGGAAAAATTGTGACGGTACGAGAC\n+CAAGCGCACCTGAGTACGACATTTCATGCGATTCTCACAACGATGTCCAGGAAGCCACCA\n+CTAACAACGTCACAACAAGTGGTAAAAGGGGTCAAGCCAATGGATAAAATCCTGCACATC\n+AATTTACCAGTTGGGGACAAAACAACGCAATACACCCAACGTGACTGTTACAAGTATTAT\n+TCCGTAACGGTCGTTGGAGATTGTGGTGCCTTGCTGGTAGCACAAAATCATGCAATTGTG\n+AGGAAAATATTTGCAATGCATATAGCAGGTGCGGAAGAAAATGGCTATGCTTGTCCAATC\n+AATCAGGAAATGTTAG\n' |
| b |
| diff -r e3aee4ba49c6 -r ea8fde9c6f82 test-data/termlist.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/termlist.txt Wed Oct 09 18:48:17 2019 -0400 |
| b |
| @@ -0,0 +1,3 @@ +Locus_65_ +Locus_63_ +Pro--Locus_50 |