| Previous changeset 5:d7edbc9c3a07 (2024-02-16) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/merqury commit 9aec17d26f63629419228ef07e76e789e5244891 |
|
modified:
macros.xml merqury.xml merqury_plot_CN.xml test-data/output_02_qv.tabular test-data/output_03_qv.tabular test-data/output_06_qv.tabular |
| b |
| diff -r d7edbc9c3a07 -r eb7b00ec347d macros.xml --- a/macros.xml Fri Feb 16 22:00:00 2024 +0000 +++ b/macros.xml Sat Apr 13 19:17:55 2024 +0000 |
| b |
| @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">1.3</token> - <token name="@VERSION_SUFFIX@">3</token> + <token name="@VERSION_SUFFIX@">4</token> <xml name="bio_tools"> <xrefs> <xref type="bio.tools">merqury</xref> @@ -11,7 +11,7 @@ <requirement type="package" version="@TOOL_VERSION@">merqury</requirement> <requirement type="package" version="1.34">tar</requirement> <requirement type="package" version="4.6.0">findutils</requirement> - <requirement type="package" version="8.32">coreutils</requirement> + <requirement type="package" version="9.5">coreutils</requirement> </requirements> </xml> <xml name="citations"> |
| b |
| diff -r d7edbc9c3a07 -r eb7b00ec347d merqury.xml --- a/merqury.xml Fri Feb 16 22:00:00 2024 +0000 +++ b/merqury.xml Sat Apr 13 19:17:55 2024 +0000 |
| b |
| @@ -236,32 +236,32 @@ <output_collection name="png_files" type="list" count="6"> <element name="output_02.assembly.spectra-cn.fl"> <assert_contents> - <has_size value="71874" delta="100"/> + <has_size value="74570" delta="100"/> </assert_contents> </element> <element name="output_02.assembly.spectra-cn.ln"> <assert_contents> - <has_size value="71888" delta="100"/> + <has_size value="74476" delta="100"/> </assert_contents> </element> <element name="output_02.assembly.spectra-cn.st"> <assert_contents> - <has_size value="71123" delta="100"/> + <has_size value="74205" delta="100"/> </assert_contents> </element> <element name="output_02.spectra-asm.fl"> <assert_contents> - <has_size value="47245" delta="100"/> + <has_size value="48524" delta="100"/> </assert_contents> </element> <element name="output_02.spectra-asm.ln"> <assert_contents> - <has_size value="46896" delta="100"/> + <has_size value="48028" delta="100"/> </assert_contents> </element> <element name="output_02.spectra-asm.st"> <assert_contents> - <has_size value="45945" delta="100"/> + <has_size value="47447" delta="100"/> </assert_contents> </element> </output_collection> |
| b |
| diff -r d7edbc9c3a07 -r eb7b00ec347d merqury_plot_CN.xml --- a/merqury_plot_CN.xml Fri Feb 16 22:00:00 2024 +0000 +++ b/merqury_plot_CN.xml Sat Apr 13 19:17:55 2024 +0000 |
| [ |
| @@ -6,9 +6,9 @@ <expand macro="bio_tools"/> <expand macro="requirements"/> <version_command>merqury --version</version_command> - <command detect_errors="exit_code"><![CDATA[ mkdir -p output_files/ && + export MERQURY="\$(dirname \$(which merqury.sh))/../share/merqury" && \$MERQURY/plot/plot_spectra_cn.R -f '$input1' -o output_files/merqury_plot |
| b |
| diff -r d7edbc9c3a07 -r eb7b00ec347d test-data/output_02_qv.tabular --- a/test-data/output_02_qv.tabular Fri Feb 16 22:00:00 2024 +0000 +++ b/test-data/output_02_qv.tabular Sat Apr 13 19:17:55 2024 +0000 |
| b |
| @@ -1,1 +1,1 @@ -assembly 0 1037953 +assembly 0 1037953 +inf 0 |
| b |
| diff -r d7edbc9c3a07 -r eb7b00ec347d test-data/output_03_qv.tabular --- a/test-data/output_03_qv.tabular Fri Feb 16 22:00:00 2024 +0000 +++ b/test-data/output_03_qv.tabular Sat Apr 13 19:17:55 2024 +0000 |
| b |
| @@ -1,3 +1,3 @@ -assembly_01 0 1037953 -assembly_02 0 1037953 -Both 0 2075906 +assembly_01 0 1037953 +inf 0 +assembly_02 0 1037953 +inf 0 +Both 0 2075906 +inf 0 |
| b |
| diff -r d7edbc9c3a07 -r eb7b00ec347d test-data/output_06_qv.tabular --- a/test-data/output_06_qv.tabular Fri Feb 16 22:00:00 2024 +0000 +++ b/test-data/output_06_qv.tabular Sat Apr 13 19:17:55 2024 +0000 |
| b |
| @@ -1,2 +1,2 @@ assembly unique k-mers common k-mers QV error rate -assembly 0 1037953 +assembly 0 1037953 +inf 0 |