Repository 'deeptools_bam_compare'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare

Changeset 18:eb9fcfcd44a0 (2018-03-02)
Previous changeset 17:2a1b4e95bdf7 (2018-02-15) Next changeset 19:439e75416e1a (2018-04-05)
Commit message:
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 72ae8f62333aa38d1c63034ddb37184a0f72c64e-dirty
modified:
deepTools_macros.xml
b
diff -r 2a1b4e95bdf7 -r eb9fcfcd44a0 deepTools_macros.xml
--- a/deepTools_macros.xml Thu Feb 15 07:48:38 2018 -0500
+++ b/deepTools_macros.xml Fri Mar 02 16:10:01 2018 -0500
[
@@ -1,10 +1,10 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">3.0.0</token>
+    <token name="@WRAPPER_VERSION@">3.0.1</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.0.0">deeptools</requirement>
+            <requirement type="package" version="3.0.1">deeptools</requirement>
             <requirement type="package" version="1.7">samtools</requirement>
         </requirements>
         <expand macro="stdio" />
@@ -456,7 +456,6 @@
             #for $counter, $f in enumerate($multibam_conditional.multibam_repeats):
                 #set identifier = re.sub('[^\.\s\w\-]', '_', str($f.bamfiles.element_identifier))
                 ln -s "${f.bamfiles}" "./${counter}.bam" &&
-                ln -s "${f.bamfiles.metadata.bam_index}" "./${counter}.bam.bai" &&
                 #if $f.bamfiles.ext == 'bam':
                     ln -s '${f.bamfiles.metadata.bam_index}' './${counter}.bam.bai' &&
                 #else: