| Previous changeset 0:741b8af6386c (2015-12-12) Next changeset 2:bd79c4d39af0 (2016-06-15) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bam_to_scidx commit f33b04533bca91242b8a0a4077e1d593f5a874e0 |
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modified:
bam_to_scidx.xml test-data/output.scidx |
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| diff -r 741b8af6386c -r ebbf2a6a4c55 bam_to_scidx.xml --- a/bam_to_scidx.xml Sat Dec 12 15:46:03 2015 -0500 +++ b/bam_to_scidx.xml Tue Apr 19 18:10:09 2016 -0400 |
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| @@ -1,5 +1,8 @@ <tool id="bam_to_scidx" name="Convert BAM to ScIdx" version="1.0.0"> <description></description> + <requirements> + <requirement type="package" version="8.0.45">java-jdk</requirement> + </requirements> <command> <![CDATA[ ln -f -s "${input_bam.metadata.bam_index}" "${input_bam}.bai" && @@ -28,7 +31,7 @@ <param name="input_bam" value="input.bam" ftype="bam" /> <param name="require_proper_mate_pairing" value="1" /> <param name="read" value="0" /> - <output name="output" file="output.scidx" lines_diff="1" ftype="scidx" /> + <output name="output" file="output.scidx" lines_diff="1" ftype="scidx" compare="contains" /> </test> </tests> <help> |
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| diff -r 741b8af6386c -r ebbf2a6a4c55 test-data/output.scidx --- a/test-data/output.scidx Sat Dec 12 15:46:03 2015 -0500 +++ b/test-data/output.scidx Tue Apr 19 18:10:09 2016 -0400 |
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| @@ -1,4 +1,3 @@ -#2015-11-23 20:18:56.51;input.bam;READ1 chrom index forward reverse value chr17 1820100 0 1 1 chr17 1849175 1 0 1 |