| Previous changeset 20:25ea52c58035 (2018-07-09) Next changeset 22:5ef3517a0df2 (2019-02-19) |
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Commit message:
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 3024062b63fdc502b46e4f328083493c2274182a |
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modified:
bamPEFragmentSize.xml deepTools_macros.xml test-data/plotPCA_result1.png test-data/plotPCA_result2.png |
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| diff -r 25ea52c58035 -r ec103ad3c567 bamPEFragmentSize.xml --- a/bamPEFragmentSize.xml Mon Jul 09 18:11:39 2018 -0400 +++ b/bamPEFragmentSize.xml Wed Aug 22 16:19:09 2018 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="deeptools_bam_pe_fragmentsize" name="bamPEFragmentSize" version="@WRAPPER_VERSION@.0"> +<tool id="deeptools_bam_pe_fragmentsize" name="bamPEFragmentSize" version="@WRAPPER_VERSION@.0" profile="18.01"> <description>Estimate the predominant cDNA fragment length from paired-end sequenced BAM/CRAM files</description> <macros> <token name="@BINARY@">bamPEFragmentSize</token> |
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| diff -r 25ea52c58035 -r ec103ad3c567 deepTools_macros.xml --- a/deepTools_macros.xml Mon Jul 09 18:11:39 2018 -0400 +++ b/deepTools_macros.xml Wed Aug 22 16:19:09 2018 -0400 |
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| @@ -1,10 +1,10 @@ <macros> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">3.1.0</token> + <token name="@WRAPPER_VERSION@">3.1.2.0</token> <xml name="requirements"> <requirements> - <requirement type="package" version="3.1.0">deeptools</requirement> + <requirement type="package" version="3.1.2">deeptools</requirement> <requirement type="package" version="1.7">samtools</requirement> </requirements> <expand macro="stdio" /> @@ -216,7 +216,7 @@ label="Use a metagene model" help="If set and a BED12 or GTF file or files is used to provide regions, only exons will be used. This is convenient for looking at coverage over mature mRNA transcripts or similar uses where introns should be ignored." /> <param argument="--transcriptID" optional="True" value="transcript" type="text" - label="trascript designator" + label="transcript designator" help="When a GTF file is used to provide regions, only entries with this value as their feature (column 2) will be processed as transcripts. Default: transcript" /> <param argument="--exonID" optional="True" value="exon" type="text" label="exon designator" @@ -654,7 +654,7 @@ </xml> <xml name="output_image_file_format"> - <data format="png" name="outFileName" label="${tool.name} image"> + <data format="png" name="outFileName" label="${tool.name} on ${on_string}: Image"> <change_format> <when input="output.outFileFormat" value="pdf" format="pdf" /> <when input="output.outFileFormat" value="svg" format="svg" /> @@ -665,7 +665,7 @@ </xml> <xml name="output_image_file_format_not_nested"> - <data format="png" name="outFileName" label="${tool.name} image"> + <data format="png" name="outFileName" label="${tool.name} on ${on_string}: Image"> <change_format> <when input="outFileFormat" value="pdf" format="pdf" /> <when input="outFileFormat" value="svg" format="svg" /> |
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| diff -r 25ea52c58035 -r ec103ad3c567 test-data/plotPCA_result1.png |
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| Binary file test-data/plotPCA_result1.png has changed |
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| diff -r 25ea52c58035 -r ec103ad3c567 test-data/plotPCA_result2.png |
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| Binary file test-data/plotPCA_result2.png has changed |
