| Next changeset 1:38eec75fbe9b (2019-08-02) |
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Commit message:
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/unzip/ commit 2183b20497f6ed7962ae764c7a93d0adcfffe254 |
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test-data/input.png test-data/input.tar test-data/input.zip test-data/res.tiff unzip.xml |
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| diff -r 000000000000 -r ec30427e0d42 unzip.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/unzip.xml Thu Aug 01 11:04:14 2019 -0400 |
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| @@ -0,0 +1,92 @@ +<tool id="unzip" name="Unzip" version="0.1"> + <description>Unzip file</description> + <requirements> + <requirement type="package">unzip</requirement> + <requirement type="package">tar</requirement> + </requirements> + <command> + <![CDATA[ + mkdir ./out && + #if $input_file.is_of_type("zip"): + unzip "$input_file" + #if $extract_options['extract_all'] == 'False' + "$extract_options['pathtofile']" + #end if + -d out/ + #end if + #if $input_file.is_of_type("tar"): + tar -xf "$input_file" + #if $extract_options['extract_all'] == 'False' + "$extract_options['pathtofile']" + #end if + -C ./out/ + #end if + ]]> + </command> + <inputs> + <param label="input_file" name="input_file" type="data" format="zip,tar"/> + + <conditional name="extract_options"> + <param label="Extract single file" name="extract_all" type="select"> + <option selected="True" value="True">All files</option> + <option value="False">Single file</option> + </param> + <when value="True"></when> + <when value="False"> + <param name="pathtofile" type="text" value="" label="Filepath"> + <sanitizer invalid_char=""> + <valid initial="string.ascii_letters,string.digits"> + <add value="_" /> + <add value="/" /> + <add value="." /> + <add value="/../" /> + </valid> + </sanitizer> + </param> + </when> + </conditional> + </inputs> + <outputs> + <data name="unzipped_single"> + <discover_datasets pattern="__name__" directory="out" visible="true" ext="data" assign_primary_output="true" /> + <filter>extract_options['extract_all'] == 'False'</filter> + </data> + <collection name="unzipped" type="list" label="${tool.name} on ${on_string}"> + <discover_datasets pattern="__name__" ext="data" directory="out" visible="false"/> + <filter>extract_options['extract_all'] == 'True'</filter> + </collection> + </outputs> + <tests> + <test> + <param name="input_file" value="input.zip" ftype="zip"/> + <param name="extract_all" value="False"/> + <param name="pathtofile" value="input.png"/> + <output name="unzipped_single" file="input.png" ftype="data" compare="sim_size" /> + </test> + <test> + <param name="input_file" value="input.zip" ftype="zip"/> + <param name="extract_all" value="True"/> + <output_collection name="unzipped" type="list"> + <element name="input.png" file="input.png" ftype="data" compare="sim_size"/> + <element name="res.tiff" file="res.tiff" ftype="data" compare="sim_size"/> + </output_collection> + </test> + <test> + <param name="input_file" value="input.tar" ftype="tar"/> + <param name="extract_all" value="True"/> + <output_collection name="unzipped" type="list"> + <element name="input.png" file="input.png" ftype="data" compare="sim_size"/> + <element name="res.tiff" file="res.tiff" ftype="data" compare="sim_size"/> + </output_collection> + </test> + </tests> + <help> + **What it does** + + Unzip folder to collection. + </help> + <citations> + <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> + </citations> +</tool> + |
