| Previous changeset 1:b1807ab520a1 (2016-11-14) |
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Commit message:
Uploaded |
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added:
scaffhunter/tool-data/scaffhunter.loc.sample |
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removed:
scaffhunter/test-data/REF.fasta scaffhunter/tool-data/scaffhunter.loc |
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| diff -r b1807ab520a1 -r ec31e4883c99 scaffhunter/test-data/REF.fasta --- a/scaffhunter/test-data/REF.fasta Mon Nov 14 08:01:49 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| b'@@ -1,244130 +0,0 @@\n->chr01\r\n-GGTTCCAAACTAGCTCGACTCAGGCTTAACCCAGTTATAACTGGATCAGGAAGACGCGTG\r\n-AGCCGAACTGGCCAAAACGAGCCCATGGGCCAGGAGACGCTCCTGGCCGTGACATTATAT\r\n-TTCCAATGAAAAATAAATATTATAAATATATAAAAAAAATTGAGATTTATAATAATTGAA\r\n-GCAACACACGTTGGAAACAATAAATGATCAACCAATTACTGTATGGAGGCGGCAAATAAG\r\n-TGCTTAAAACTGATCAGTTATAAAATATTAATGGGAAAAAAGAAAAATAAATCAAAACTT\r\n-GTTTAGGGTGGTTTAGGGTTTAGGGACGGTCGATCGTTGTCGCCCGCTACAGGACGGTAT\r\n-TAGCCGAGGGAGAAGGAAGAAGAGAGAGAAGAAAAAGGAGAACTTGGAGATCTGATGCCA\r\n-CTCTCCATCGACGATCCCAATTCGTCGTCGCCCTCCCTCACCAGGCGTCGCAGATGCGAT\r\n-GTCGCCTCCTAGTTTAAGGCAACGAGGCCTCGGCGTCGTCGACGACTTCTTATCCGTATG\r\n-GGGAGAAGAAACCTCTACAATGATGTCATGGAGGCTTCGCGGGGAGAAGAAATGTCTTCT\r\n-CCCCACACGAGGAGAAGAAACGAGGCGACGTCGCCTTGACGACGTTGCCATTTTTTTATT\r\n-TTTTACTTTTTTATTATATATATATATATACATACATACATATATATACCGAGTGGTACG\r\n-TCAGAGTATACCATTCGGCATACTCATACCGTACCATACTAAGCTGATCTCGATACTCCG\r\n-GTACGATACGAAATTGCAAACCTTGACTTATACCCATAATATTAATTCTTTTTAGTTTGC\r\n-AAAAAAAAATAATTTAAAGTATAATATAAACTTCAAAACAAAAATATTACAAAATAACAT\r\n-ATCATGGTAATTGTACATTTGAACTTGCTTAATGTGTCTATGCAGAATATAGCACAAAAC\r\n-TATCTGTACCTATAATTAACTTGGGAAGCACAACCTAACATAGTCAATTAATGTTCCTTG\r\n-TTTGGCATGGCTGGCAGATCCGTTTCTTTACACAACCCATAACCAAAGAAATGCTCTACA\r\n-AATTGTCTGCTTCCTTCTTTCAAAAAGGAAGGAAGAGGAGAATACAGAACTCTACTCTTG\r\n-CTTAAACATGAATAAATTTAATAAGGACATCACCAAGGTCTGTTTCCACTCTATTTATAA\r\n-TTTGTTAAAATTATCAAAAACAAAGCATGCCCACCCAGTTTCTAAGATCAACAAAAACAC\r\n-CAATGCAGTAATGTTTGTAAGATCAGCTTAGAGTAAAACCAAGAATCAAGTATCGAAACC\r\n-TTACTTCCCAACTTCATCACAATCTAATTCCACATAGAAATAATGAAGAGAAAAGAACAC\r\n-AACACTCAACCATTTTCTAAAGCCACATGAACCACAAGACCCAAGTAATGAGACCCAAAT\r\n-ACAGATTTAGGGTTGGCGTGAGTATCCATAAATAGAATAAGATAAAGCAAAGTGGAAGAA\r\n-CTATTCAATATTTCAAAAGATCAAGACACAATCATGAGACTAGACAATCCAATTAGTTTC\r\n-ATGTATACTGTTAAGTGCATAGTGTCACTTCTTTTTTCACAAAATAGACAAATAATACAA\r\n-TTTAAGATAAGGATAACTTTAAGTAGCACTAATTGATCCGAAACGAGAGCGACCGAGTGC\r\n-TAGGGCAAGATTGAAGGCGACAAAAAAAACCCGATCAAGAATCAAAACTAGAGAACAAGA\r\n-TTGAATACGAACCAAAGCAATTGATCCGAAACAACAAGGCCGTGAGCTGGGGGCTGCCAA\r\n-GAGCAAGAGAAACGCTCGAGGAGAAACCTAATAGCTTGCCTAGCGACAAGGTGGAAGAGG\r\n-GAGGGGGAGGGACGAGGGACCGGGGAAGGGGGGGCTGCGATGGCGAAGGACGAAGAAAAG\r\n-AAGAAAGAGAGATATACCAGGGAGTAGAGACGCCACCCAACTCTGCCGCTAGATGAAGAA\r\n-GAAGACGCAGCAGCCGTCGTTCACCGACGAAAAAGCTGCAGCGACAAGAACCCCCGGTAG\r\n-GAAGACAACGCCGTTGCTCCGCTGTTCACTTATGAAGAGGAAGATGGTCGACGTTCGCCG\r\n-AGGAAACGCAGCAATCGCCGTTGGGGAGAGAGAGAGTGCCCGGTGGGAGAACAACCACCG\r\n-CTTAGGGCACGGGAACGACCAGCAAGTGTGTTGTGGGGCGGGTTTCAGGGTGATTATTGC\r\n-CAATTTAGCTTGACTCAAGTTCGACTCAGAATAGTTGAATCACGCCGGAACAAAAGCCCA\r\n-GCAATAGCTTGACTCAAGTTCGACTCAGAATAGTTGAATCACGCCGGAACAAAAGCCCAG\r\n-CAATGCTTGGGCCCAAACTAGCGCACAGGCCGAACGCTAGTTTATAAAAATATATAATAT\r\n-AATTAATAATTTCAAATAAATAAAAATTAACAACATTAAAATCAAAATAATATATTATTA\r\n-ATCTATTAACAAAAAATTAATCATTTCAAAATTCAAATAAACTTAATATTTAGAGTATAT\r\n-TGTATACTGAGCCTGATGGAGAAACGAGGAAGCAGCGGCGAGCGGCGGCAACGACAGCGA\r\n-GAAAGGGAAAGGGAGCGGAAGGCACGAGCAGCGGGAGGCGCGAGCAGCGGCAAGGCTTGC\r\n-GGGAGGCGCGAGCAGCGACAGCGGCGAGCGGCGGCAGTGGGAGCAGGAGCGACGAGCAGC\r\n-GAGATCACGATCGGGATCGGGATCGGTAGTAGGTTAGGGTTGGGTAAGGGTTAGGGTTGG\r\n-GGATATATCGGTTTAGTTGGTTCGATTGAACCAACTAACAACCGAACCAGACCTAAAATT\r\n-CTGGTTCGGTCTCCTTGGTTTACCCAGGCGCTCGCCCGAAGCGCTTGGGCTCGGGCAAGC\r\n-GCCCAGGCGGCGTCTGTTTGAAGCACGCCGCCTGGGACATTAGCGAGGCGCTCGGGCCTC\r\n-GCCTCGCCTCGCCCGAGCGCCTAGGCGAGCGCCAGAGCGCCTTTTTCAATCACTGTGACA\r\n-GCCTAGTAGTTGGATCAACATAATGCGTCGATCAAGATGGGATGTTTACCAGACGATTAC\r\n-TATTAGTAAGCTGCTAAATGAGATAGAGGCCCCATTATGTCGAGATTCGAAAGAGGAGTT\r\n-GGCTCCTGACTTCTGAAAGAATAGCTGCTTAGCATGACAGGATACCGATATTATGGCTCC\r\n-AAGGAACATGAGTAAATATGTTGAAGCTAGTTTAGATGTATACACAGTGTGATTATATAA\r\n-AAGATCTTTTGTCTTTTTTTGTTTTCTCCTTCCCATCAAGTATGTTTGAAACTCGCAATC\r\n-TTTGGGACATTGATTGATCTTTTTCTACCTACTTCTCTTTGGAGATTTTGCAGCCCCTAC\r\n-ACCTTAATTGCTTTGTTATTCTTGTGTGTTCTATTGATCGGTTAATTGTTTTGCTTTTAC\r\n-TTACTGGTGAAATTTATAATTTCGGTGAAGTTTTGAGGAGCCAAAAGGTTTCAAGAAGAT\r\n-GCCATGGACAAGTGCATTGGAGTGCCCTGGATGCCCACCTTTGAGAGCCTTGACGACTGA\r\n-CGTGCTCGGTCTTGTAAAAGGTGGTTGTTGTTGCTTAAACATTACTCTTTCTTGAATGGT\r\n-CTACATGGCATGCATTTCTTAATTACAACTCATGATGTGATATTGCAATGAGTTTTCAGT\r\n-TGTCGAAGCTCATGGAAAGACTGGAATTCCAAAGGTGGTAGAAACATGGGGGCAGCCAAA\r\n-TGCTTCATCTTGTGTCCTTGCTGCTTCTTATTCTGATCACAAATCTGATCTGGTTTGTTA\r\n'..b'NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN\r\n-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGTCATATCTACAAAAA\r\n-TGAAAATAAATGGGATATCTTGAATTTGTCGTTAGCTTTTAACTACAACCGAAGTTAGGT\r\n-ATGTTCGGCTCTTACACAAATTACTATATCGTAAAGGTGCCTTGCGAAATGAGAGTGTTA\r\n-GTCGTTCATTATTTTTTATCTTGGTCTTCGATTGCAGATGGACCCTTTGATAGGCGAGGT\r\n-TATTCAACACTGGCACAGATTTTACTGTCACAATAGCGATGACCAATCATTCTTGTAAAA\r\n-TTAATTTGATAAGCATAGCACGAGTTCCTTATCCAAGTTCGATCAACTTTCTTATATCAC\r\n-AACAGCCCTCAACCTCAAGAAAAAAGTTGATATTCTCTCGAGCACAAATGCAAAAGGTAT\r\n-TATTCCTAATATCCGCAAGAATCAACCGAAGCTATTTTCAAATACCTCAGAAGAGAAATA\r\n-GGATATAAACAAGCAATCTAGTGCAACACAAAATCGGGGAACTAGCAACTGTATCAGGTT\r\n-CATATCTGCGTCAACAAATTATATCTGCATCAATTGTAAGATTTCTATGAAAAGAAAATG\r\n-TACTCCCACTTGCATTATATTCTCTTGCTTTCCAATTTTCTAATATGTCAAATATCAAAA\r\n-ATCATGATTGACATAAAAAACAATTGAAATCATGTGTCAATTTGAATAGTCTTGTTAAAC\r\n-CATTTAATTAATTATCTTATGCATTTACTTTTGGTAGATCTGACAAAAGATTTGATTAAC\r\n-CCTCTTTTTCTTTGTTTAAATTTTAAAATTTTATTTTATCGAAATTTTAATATTTTTATT\r\n-TTGACTAAATTTTAATATTTTTAATTTGATATTGACTAATATTTTTTATTTCCATTTTGA\r\n-CTAATTCTTTTTTATTTTGATTTTTACAATTATTATTATTATTTTAATTTTGAAAAATAT\r\n-TATTTTTCATATTAAATATTAGAAAAAAGTAATTTGATTAGTATAATCCATAGTTTAATC\r\n-TTATATGCATCAAAAGGTAACATAAATTTTAGGAAGAACCAAGATTCTAGATTTGATATG\r\n-GTAGAATAATTTTCATTCATTCCCATCCAATCAAAATCTTTTTTTGATAAGTCTTGGTAT\r\n-TTTTATTAATTACGATATCGGTATACATATCAGTCTAGTTCTCAATATCTCTGTTGTTTT\r\n-TAAAGTAAAAATAAAGAATTCTATAATTCAAATATTTTCTATCTAGATTTTTATGGGTAT\r\n-CAATAAAATATCATTACTATGCCCATAATTTATATATTAATGTGATAAAAGATCATATCT\r\n-ATAGTGTTTTTAAAATTTATATATAGTTGCACTGGATTGCTAGTTTGTACACTATTTCTA\r\n-TTCTAAAAAATTGGAGATAAGCTTCGATTGATACTTGCGATTATTAGGAATAATACCTTT\r\n-TGCATTTAGGCTCGAGAGAATATCAACTTTTTTCTTGAGGTCAAGGGCAGCTATGAAGTA\r\n-AAAAGTTAATTGTATCTGGATAAGGAACACATGTTATGTTTATCCCATTTATGTTGCCAG\r\n-AATGAATGGCCATCGCTGCTGGGACAGCGAAAATTAAGCTGGTATTGAATCATCTCGCCT\r\n-ATCAGGGGTTTTATCTGCAATCTAAGAACAAGATAAAAAAATGATGAATGACTCACTCTC\r\n-TTATTTCGCTTGGAACCTTTACGATAGAGTAGTCTGTGTCAAAGCCGAACACATTCTGTT\r\n-TTAGCTAGAAGCTGACGACATATTCTTGTCATAAGATGGAAACGTTCCATTGCTGAAAGC\r\n-GGGCAACTATCATTGATGATAACGTTTTTTTCCGGATATCCTGTACTCATAGGACACCAA\r\n-CGGTTGACATTGCAACATGATCCGTGCCACTGTATGTTTCAAATCAGAGCAATCAATATA\r\n-GAGAAAAACAAGAGATATAAAAAAATTAGACTTACCAGTAGAACTAAGTGAAAATAATCA\r\n-TAATTGGACACAATAGTGGTGGAGAAAACCAGCAAGAAAGGGACAACGAGAGGTGTCATG\r\n-CTTTGGCGAGTTAGACTTCTGGGCATGTC\r\n' 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| b |
| diff -r b1807ab520a1 -r ec31e4883c99 scaffhunter/tool-data/scaffhunter.loc --- a/scaffhunter/tool-data/scaffhunter.loc Mon Nov 14 08:01:49 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,1 +0,0 @@ -sample_sh Sample for Scaffhunter /bank/musa_acuminata/sample/scaffolds.fasta |
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| diff -r b1807ab520a1 -r ec31e4883c99 scaffhunter/tool-data/scaffhunter.loc.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/scaffhunter/tool-data/scaffhunter.loc.sample Mon Nov 14 08:04:53 2016 -0500 |
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| @@ -0,0 +1,1 @@ +sample_sh Sample for Scaffhunter /bank/musa_acuminata/sample/scaffolds.fasta |