Repository 'lumpy'
hg clone https://toolshed.g2.bx.psu.edu/repos/drosofff/lumpy

Changeset 11:ecbc563571ea (2016-12-12)
Previous changeset 10:4584440b2634 (2016-12-12) Next changeset 12:b3fb23bbca8e (2016-12-18)
Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy commit 079a105fb5e798410bfae15590daa79163d885ad
modified:
lumpy.xml
b
diff -r 4584440b2634 -r ecbc563571ea lumpy.xml
--- a/lumpy.xml Mon Dec 12 08:47:56 2016 -0500
+++ b/lumpy.xml Mon Dec 12 13:45:08 2016 -0500
b
@@ -72,7 +72,6 @@
                 meanB=\$(cat meandevB.txt | sed s/mean:// | sed -r s/stdev:.+//) &&
                 stdevA=\$(cat meandevA.txt | sed -r s/mean:.+stdev://) &&
                 stdevB=\$(cat meandevB.txt | sed -r s/mean:.+stdev://) &&
-<<<<<<< HEAD
                 lumpy -mw $seq_method.additional_params.mw -tt $seq_method.additional_params.tt
                     #if $output_format == "BEDPE":
                         -b